Wall clock time and date at job start Tue Mar 31 2020 23:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09001 * 109.46592 * 2 1 4 4 N 1.46500 * 109.46904 * 119.99989 * 2 1 3 5 5 S 1.65596 * 119.99833 * 266.33454 * 4 2 1 6 6 O 1.42101 * 106.40033 * 177.98006 * 5 4 2 7 7 O 1.42104 * 106.40302 * 310.89412 * 5 4 2 8 8 C 1.76191 * 107.22003 * 64.43687 * 5 4 2 9 9 C 1.37642 * 120.12847 * 244.86871 * 8 5 4 10 10 C 1.38612 * 120.24821 * 180.02562 * 9 8 5 11 11 C 1.38656 * 120.50153 * 359.97438 * 10 9 8 12 12 C 1.37599 * 120.25003 * 0.02562 * 11 10 9 13 13 C 1.40704 * 120.12878 * 64.59581 * 8 5 4 14 14 C 1.41395 * 120.24118 * 359.97438 * 13 8 5 15 15 H 1.08002 * 120.00118 * 331.34997 * 14 13 8 16 16 C 1.39942 * 119.99802 * 151.34756 * 14 13 8 17 17 N 1.30822 * 120.00300 * 348.09675 * 16 14 13 18 18 Si 1.86804 * 120.00144 * 168.09714 * 16 14 13 19 19 H 1.48505 * 109.46963 * 59.99863 * 18 16 14 20 20 H 1.48492 * 109.47357 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46847 * 300.00187 * 18 16 14 22 22 C 1.52994 * 109.47162 * 240.00183 * 2 1 3 23 23 C 1.53172 * 109.54556 * 179.55232 * 22 2 1 24 24 C 1.53089 * 109.16831 * 183.15382 * 23 22 2 25 25 O 1.42902 * 109.41395 * 57.60531 * 24 23 22 26 26 C 1.42899 * 114.10194 * 298.84534 * 25 24 23 27 27 C 1.53091 * 109.41329 * 61.15462 * 26 25 24 28 28 H 1.09001 * 109.46592 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47059 * 60.00202 * 1 2 3 30 30 H 1.09001 * 109.47064 * 299.99745 * 1 2 3 31 31 H 0.96993 * 119.99797 * 86.34270 * 4 2 1 32 32 H 1.07996 * 119.87346 * 359.97438 * 9 8 5 33 33 H 1.07996 * 119.75405 * 179.97438 * 10 9 8 34 34 H 1.07999 * 119.88081 * 179.97438 * 11 10 9 35 35 H 1.08006 * 120.12649 * 179.97438 * 12 11 10 36 36 H 0.96999 * 120.00036 * 180.02562 * 17 16 14 37 37 H 1.09005 * 109.54655 * 299.82051 * 22 2 1 38 38 H 1.09001 * 109.52466 * 303.06276 * 23 22 2 39 39 H 1.09005 * 109.52249 * 63.24338 * 23 22 2 40 40 H 1.09001 * 109.48027 * 297.62780 * 24 23 22 41 41 H 1.08997 * 109.48347 * 177.59609 * 24 23 22 42 42 H 1.08997 * 109.48047 * 301.17600 * 26 25 24 43 43 H 1.08995 * 109.48257 * 181.13660 * 26 25 24 44 44 H 1.09003 * 109.52371 * 182.48583 * 27 26 25 45 45 H 1.09004 * 109.52183 * 62.30049 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 16 2.3807 0.1738 2.5613 6 8 2.7755 -0.7742 3.5435 7 8 3.2074 1.2523 2.1457 8 6 0.8787 0.8918 3.1381 9 6 0.7254 2.2596 3.1466 10 6 -0.4550 2.8271 3.6004 11 6 -1.4938 2.0262 4.0498 12 6 -1.3626 0.6564 4.0503 13 6 -0.1709 0.0690 3.5865 14 6 -0.0271 -1.3376 3.5765 15 1 0.6185 -1.8093 2.8504 16 6 -0.7213 -2.1186 4.5074 17 7 -1.3138 -1.5501 5.5258 18 14 -0.8019 -3.9728 4.2959 19 1 0.5733 -4.5331 4.3120 20 1 -1.5909 -4.5639 5.4064 21 1 -1.4527 -4.2954 3.0006 22 6 2.0401 -0.7212 -1.2492 23 6 3.5717 -0.7124 -1.2566 24 6 4.0719 -1.3659 -2.5475 25 8 3.5364 -0.6661 -3.6725 26 6 2.1093 -0.6814 -3.7439 27 6 1.5303 -0.0004 -2.5010 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 2.1295 -1.6541 1.1885 32 1 1.5281 2.8931 2.7992 33 1 -0.5666 3.9013 3.6039 34 1 -2.4090 2.4790 4.4015 35 1 -2.1729 0.0344 4.4012 36 1 -1.7947 -2.0914 6.1713 37 1 1.6800 -1.7500 -1.2489 38 1 3.9304 0.3157 -1.2061 39 1 3.9433 -1.2713 -0.3976 40 1 3.7470 -2.4059 -2.5780 41 1 5.1607 -1.3241 -2.5779 42 1 1.7587 -1.7124 -3.7901 43 1 1.7843 -0.1464 -4.6362 44 1 0.4419 -0.0501 -2.5322 45 1 1.8477 1.0421 -2.4757 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601372146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:21 Heat of formation + Delta-G solvation = -141.087854 kcal Electronic energy + Delta-G solvation = -28981.872063 eV Core-core repulsion = 25089.304369 eV Total energy + Delta-G solvation = -3892.567694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.52513 -39.38428 -38.09481 -37.61383 -36.65763 -35.65576 -33.65248 -32.13220 -31.96564 -31.34698 -30.17541 -27.32457 -26.17316 -24.28836 -23.41251 -22.96115 -22.47626 -21.17552 -20.17156 -19.48147 -18.51163 -17.97343 -17.21475 -17.10344 -16.85059 -16.73921 -16.10025 -15.95984 -15.63319 -15.11662 -15.02757 -14.92038 -14.49766 -14.45801 -14.36591 -14.06459 -13.61726 -13.41428 -13.23969 -12.99804 -12.95291 -12.86312 -12.81332 -12.75298 -12.57961 -12.41425 -12.28501 -12.16019 -12.15183 -11.65278 -11.63911 -11.46993 -11.18052 -11.14990 -11.07096 -10.50723 -10.13056 -9.78791 -9.40473 -8.77535 -6.58625 -0.14152 0.55866 0.99831 1.36983 1.48032 1.53184 2.16091 2.35850 2.65505 3.01146 3.05155 3.49504 3.62519 3.78639 3.91228 3.94798 4.14482 4.30487 4.35135 4.35691 4.43446 4.49235 4.51741 4.61216 4.67851 4.73397 4.83586 4.86413 4.89300 4.99579 4.99998 5.05199 5.16873 5.19735 5.21055 5.30870 5.35182 5.50168 5.53983 5.58514 5.73111 5.84580 6.02769 6.10633 6.27954 6.34239 6.49961 6.70177 6.86168 8.18214 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012229 B = 0.004574 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.143903 B = 6119.704294 C = 6918.285813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.159 3.841 3 H 0.075 0.925 4 N -1.103 6.103 5 S 2.716 3.284 6 O -1.003 7.003 7 O -1.011 7.011 8 C -0.785 4.785 9 C -0.017 4.017 10 C -0.250 4.250 11 C -0.076 4.076 12 C -0.185 4.185 13 C 0.171 3.829 14 C -0.471 4.471 15 H 0.094 0.906 16 C 0.039 3.961 17 N -0.809 5.809 18 Si 0.973 3.027 19 H -0.262 1.262 20 H -0.266 1.266 21 H -0.243 1.243 22 C -0.085 4.085 23 C -0.156 4.156 24 C 0.063 3.937 25 O -0.405 6.405 26 C 0.059 3.941 27 C -0.149 4.149 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.420 0.580 32 H 0.118 0.882 33 H 0.124 0.876 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.294 0.706 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.107 0.893 44 H 0.095 0.905 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.830 -2.472 -14.493 14.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.052 3.948 3 H 0.093 0.907 4 N -0.863 5.863 5 S 2.813 3.187 6 O -0.993 6.993 7 O -1.001 7.001 8 C -0.879 4.879 9 C -0.037 4.037 10 C -0.270 4.270 11 C -0.095 4.095 12 C -0.204 4.204 13 C 0.167 3.833 14 C -0.500 4.500 15 H 0.112 0.888 16 C -0.179 4.179 17 N -0.433 5.433 18 Si 0.792 3.208 19 H -0.187 1.187 20 H -0.190 1.190 21 H -0.167 1.167 22 C -0.105 4.105 23 C -0.194 4.194 24 C -0.014 4.014 25 O -0.324 6.324 26 C -0.017 4.017 27 C -0.188 4.188 28 H 0.085 0.915 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.255 0.745 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.105 0.895 37 H 0.110 0.890 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.080 0.920 43 H 0.125 0.875 44 H 0.114 0.886 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.658 -2.156 -14.034 14.295 hybrid contribution -0.974 -0.762 0.993 1.587 sum 0.684 -2.918 -13.041 13.381 Atomic orbital electron populations 1.22368 0.94858 1.03175 1.02635 1.20827 0.94243 0.95782 0.83917 0.90690 1.55346 1.84143 1.19855 1.26919 1.00413 0.73775 0.72298 0.72240 1.93489 1.83145 1.62993 1.59685 1.93424 1.66956 1.56707 1.83055 1.30094 1.21247 1.03233 1.33358 1.20532 0.96822 0.92736 0.93566 1.20842 0.95545 0.99097 1.11508 1.21219 0.98155 0.93934 0.96191 1.21559 0.98572 0.94345 1.05968 1.17200 0.88965 0.92495 0.84681 1.20095 1.23643 0.91581 1.14644 0.88784 1.26788 0.91749 1.06434 0.92894 1.69821 1.24052 1.40753 1.08697 0.85368 0.79805 0.75430 0.80151 1.18668 1.19013 1.16675 1.21421 0.95131 1.00759 0.93166 1.22269 0.95968 1.02100 0.99063 1.22639 0.99299 0.95097 0.84339 1.87892 1.21731 1.76414 1.46395 1.22724 0.80010 1.00758 0.98219 1.22301 1.02339 1.00277 0.93840 0.91512 0.89582 0.93744 0.74461 0.86426 0.85806 0.86240 0.86902 0.89492 0.89019 0.92263 0.90790 0.91853 0.88281 0.92010 0.87507 0.88619 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.74 9.17 71.98 0.66 -4.08 16 2 C 0.16 4.43 2.48 44.99 0.11 4.54 16 3 H 0.07 2.28 7.53 -2.39 -0.02 2.26 16 4 N -1.10 -36.22 3.90 -169.39 -0.66 -36.88 16 5 S 2.72 117.39 4.94 -56.49 -0.28 117.11 16 6 O -1.00 -50.28 16.61 -128.00 -2.13 -52.41 16 7 O -1.01 -45.52 16.33 -128.00 -2.09 -47.61 16 8 C -0.79 -36.77 4.74 22.73 0.11 -36.66 16 9 C -0.02 -0.74 9.53 22.22 0.21 -0.53 16 10 C -0.25 -10.40 10.05 22.46 0.23 -10.18 16 11 C -0.08 -3.30 10.02 22.22 0.22 -3.08 16 12 C -0.18 -9.00 8.66 22.73 0.20 -8.81 16 13 C 0.17 8.53 5.09 -21.29 -0.11 8.42 16 14 C -0.47 -23.11 7.65 23.46 0.18 -22.93 16 15 H 0.09 4.26 5.74 -2.91 -0.02 4.24 16 16 C 0.04 1.85 5.23 85.26 0.45 2.30 16 17 N -0.81 -39.82 10.88 21.83 0.24 -39.58 16 18 Si 0.97 35.61 29.58 68.60 2.03 37.64 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.27 -9.25 7.11 99.48 0.71 -8.54 16 21 H -0.24 -8.17 7.11 99.48 0.71 -7.47 16 22 C -0.08 -1.80 1.96 -10.68 -0.02 -1.82 16 23 C -0.16 -3.51 5.22 30.68 0.16 -3.35 16 24 C 0.06 1.19 6.84 72.01 0.49 1.69 16 25 O -0.41 -8.70 10.76 -148.98 -1.60 -10.30 16 26 C 0.06 0.97 6.84 72.01 0.49 1.46 16 27 C -0.15 -2.66 4.97 30.68 0.15 -2.51 16 28 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 29 H 0.09 1.87 6.51 -2.39 -0.02 1.85 16 30 H 0.04 1.53 6.40 -2.39 -0.02 1.52 16 31 H 0.42 12.08 8.57 -96.75 -0.83 11.25 16 32 H 0.12 4.83 7.32 -2.91 -0.02 4.81 16 33 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.12 4.41 8.06 -2.91 -0.02 4.38 16 35 H 0.11 5.66 6.24 -2.91 -0.02 5.64 16 36 H 0.29 13.06 8.30 -92.71 -0.77 12.29 16 37 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 38 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.68 7.73 -2.38 -0.02 1.67 16 40 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.10 1.41 6.62 -2.39 -0.02 1.39 16 45 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -65.09 364.99 -0.78 -65.87 By element: Atomic # 1 Polarization: 41.53 SS G_CDS: 0.18 Total: 41.71 kcal Atomic # 6 Polarization: -79.07 SS G_CDS: 3.53 Total: -75.54 kcal Atomic # 7 Polarization: -76.04 SS G_CDS: -0.42 Total: -76.47 kcal Atomic # 8 Polarization: -104.50 SS G_CDS: -5.82 Total: -110.32 kcal Atomic # 14 Polarization: 35.61 SS G_CDS: 2.03 Total: 37.64 kcal Atomic # 16 Polarization: 117.39 SS G_CDS: -0.28 Total: 117.11 kcal Total: -65.09 -0.78 -65.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601372146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.221 kcal (2) G-P(sol) polarization free energy of solvation -65.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds