Wall clock time and date at job start Tue Mar 31 2020 23:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46671 * 2 1 4 4 N 1.46499 * 109.47122 * 240.00275 * 2 1 3 5 5 S 1.65606 * 120.00095 * 94.30603 * 4 2 1 6 6 O 1.42096 * 106.40085 * 310.29547 * 5 4 2 7 7 O 1.42096 * 106.40144 * 177.37534 * 5 4 2 8 8 C 1.76205 * 107.21335 * 63.83471 * 5 4 2 9 9 C 1.37641 * 120.12435 * 244.00838 * 8 5 4 10 10 C 1.38620 * 120.24300 * 180.32111 * 9 8 5 11 11 C 1.38654 * 120.49906 * 359.68019 * 10 9 8 12 12 C 1.37597 * 120.25238 * 359.97438 * 11 10 9 13 13 C 1.40696 * 120.12601 * 63.71443 * 8 5 4 14 14 C 1.41390 * 120.24867 * 359.96990 * 13 8 5 15 15 H 1.08002 * 119.99915 * 335.19747 * 14 13 8 16 16 C 1.39946 * 120.00477 * 155.18873 * 14 13 8 17 17 N 1.30825 * 119.99618 * 332.34521 * 16 14 13 18 18 Si 1.86791 * 120.00160 * 152.33644 * 16 14 13 19 19 H 1.48510 * 109.47357 * 270.00274 * 18 16 14 20 20 H 1.48502 * 109.47426 * 30.00349 * 18 16 14 21 21 H 1.48504 * 109.47154 * 150.00623 * 18 16 14 22 22 C 1.53001 * 109.47129 * 120.00034 * 2 1 3 23 23 C 1.53177 * 109.54347 * 59.82678 * 22 2 1 24 24 C 1.53105 * 109.15652 * 183.23786 * 23 22 2 25 25 O 1.42911 * 109.48515 * 57.47177 * 24 23 22 26 26 C 1.42904 * 114.09609 * 298.88969 * 25 24 23 27 27 C 1.53089 * 109.41555 * 61.16138 * 26 25 24 28 28 H 1.09004 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46926 * 299.99547 * 1 2 3 30 30 H 1.08997 * 109.47296 * 59.99775 * 1 2 3 31 31 H 0.97000 * 120.00256 * 274.30647 * 4 2 1 32 32 H 1.07994 * 119.88186 * 0.02757 * 9 8 5 33 33 H 1.07998 * 119.74410 * 179.69905 * 10 9 8 34 34 H 1.08009 * 119.87180 * 180.02562 * 11 10 9 35 35 H 1.08004 * 120.12277 * 180.02562 * 12 11 10 36 36 H 0.97004 * 120.00345 * 356.14372 * 17 16 14 37 37 H 1.09001 * 109.53789 * 180.02562 * 22 2 1 38 38 H 1.09002 * 109.51931 * 303.05452 * 23 22 2 39 39 H 1.08997 * 109.52342 * 63.24159 * 23 22 2 40 40 H 1.09002 * 109.40729 * 297.49622 * 24 23 22 41 41 H 1.08999 * 109.48426 * 177.50008 * 24 23 22 42 42 H 1.08997 * 109.47734 * 301.17294 * 26 25 24 43 43 H 1.09003 * 109.47292 * 181.14028 * 26 25 24 44 44 H 1.09000 * 109.51866 * 182.48745 * 27 26 25 45 45 H 1.08996 * 109.57955 * 62.32473 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 -1.1962 5 16 2.3959 0.1757 -2.5562 6 8 1.2866 1.0264 -2.8109 7 8 2.8909 -0.7606 -3.5036 8 6 3.7470 1.2293 -2.1450 9 6 3.5904 2.5965 -2.1735 10 6 4.6535 3.4278 -1.8570 11 6 5.8830 2.8938 -1.5021 12 6 6.0603 1.5299 -1.4601 13 6 4.9882 0.6762 -1.7804 14 6 5.1589 -0.7268 -1.7410 15 1 4.3049 -1.3706 -1.5908 16 6 6.4343 -1.2813 -1.8967 17 7 7.3449 -0.6437 -2.5865 18 14 6.8365 -2.9316 -1.1196 19 1 7.3686 -2.7173 0.2502 20 1 5.6052 -3.7586 -1.0486 21 1 7.8558 -3.6310 -1.9426 22 6 2.0400 -0.7213 1.2492 23 6 1.5268 -2.1645 1.2531 24 6 1.9743 -2.8534 2.5450 25 8 1.4895 -2.1177 3.6702 26 6 1.9761 -0.7761 3.7437 27 6 1.5267 -0.0031 2.5010 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.1205 -1.6551 -1.1917 32 1 2.6371 3.0232 -2.4481 33 1 4.5231 4.4994 -1.8866 34 1 6.7043 3.5509 -1.2570 35 1 7.0187 1.1162 -1.1831 36 1 7.1202 0.1857 -3.0365 37 1 3.1300 -0.7215 1.2506 38 1 0.4380 -2.1640 1.2003 39 1 1.9338 -2.6981 0.3942 40 1 3.0633 -2.8909 2.5771 41 1 1.5746 -3.8671 2.5739 42 1 3.0650 -0.7865 3.7914 43 1 1.5775 -0.2933 4.6360 44 1 1.9338 1.0075 2.5338 45 1 0.4381 0.0434 2.4736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601372148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:27 Heat of formation + Delta-G solvation = -126.415733 kcal Electronic energy + Delta-G solvation = -29272.827223 eV Core-core repulsion = 25380.895760 eV Total energy + Delta-G solvation = -3891.931463 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.68970 -37.86960 -36.74367 -36.19654 -34.89544 -34.17479 -32.49056 -31.11362 -30.25977 -29.54258 -29.00032 -25.45571 -25.30099 -23.64506 -22.03504 -21.83807 -21.24134 -19.30926 -18.77175 -18.33185 -17.00925 -16.45042 -16.12947 -15.96007 -15.48390 -14.95136 -14.80375 -14.71751 -14.45885 -14.20786 -13.74670 -13.65516 -13.44245 -13.16431 -12.88494 -12.58433 -12.30308 -12.27477 -11.92541 -11.69999 -11.59847 -11.27933 -11.21260 -11.14800 -11.08976 -11.03597 -10.97906 -10.78906 -10.60828 -10.55844 -10.51201 -10.06196 -9.91890 -9.67023 -9.45846 -9.28052 -8.84933 -8.25965 -7.89816 -7.57580 -4.89975 1.47816 2.20083 2.60812 2.99693 3.10779 3.18033 3.78757 3.82440 3.86832 4.25637 4.60322 4.71380 4.79009 4.81864 5.00098 5.08737 5.21649 5.31805 5.36346 5.43723 5.47715 5.57390 5.62510 5.64829 5.80650 5.87141 5.89300 5.91566 6.01341 6.03154 6.04976 6.10154 6.25878 6.30004 6.49798 6.58335 6.63651 6.85547 7.05018 7.15792 7.24254 7.33858 7.43368 7.55677 7.60708 7.75445 7.92768 8.29652 8.51508 9.68120 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009362 B = 0.005890 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.992818 B = 4752.981506 C = 5917.072269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.166 3.834 3 H 0.084 0.916 4 N -1.116 6.116 5 S 2.700 3.300 6 O -0.997 6.997 7 O -0.969 6.969 8 C -0.784 4.784 9 C 0.014 3.986 10 C -0.267 4.267 11 C -0.054 4.054 12 C -0.215 4.215 13 C 0.164 3.836 14 C -0.493 4.493 15 H 0.088 0.912 16 C 0.043 3.957 17 N -0.766 5.766 18 Si 1.065 2.935 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.271 1.271 22 C -0.096 4.096 23 C -0.154 4.154 24 C 0.060 3.940 25 O -0.386 6.386 26 C 0.061 3.939 27 C -0.152 4.152 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.409 0.591 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.305 0.695 37 H 0.086 0.914 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.051 0.949 43 H 0.091 0.909 44 H 0.076 0.924 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.020 -2.244 10.001 12.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.058 3.942 3 H 0.102 0.898 4 N -0.872 5.872 5 S 2.798 3.202 6 O -0.987 6.987 7 O -0.959 6.959 8 C -0.879 4.879 9 C -0.006 4.006 10 C -0.288 4.288 11 C -0.072 4.072 12 C -0.235 4.235 13 C 0.159 3.841 14 C -0.520 4.520 15 H 0.106 0.894 16 C -0.183 4.183 17 N -0.386 5.386 18 Si 0.887 3.113 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.196 1.196 22 C -0.116 4.116 23 C -0.192 4.192 24 C -0.016 4.016 25 O -0.305 6.305 26 C -0.015 4.015 27 C -0.191 4.191 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.243 0.757 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.128 0.872 36 H 0.119 0.881 37 H 0.105 0.895 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.069 0.931 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.372 -3.289 9.460 11.871 hybrid contribution -0.251 1.408 -0.074 1.432 sum -6.622 -1.881 9.387 11.641 Atomic orbital electron populations 1.22457 0.95771 1.02430 1.02717 1.20515 0.93618 0.95923 0.84114 0.89777 1.55794 1.82688 1.18989 1.29742 1.01089 0.73499 0.73244 0.72384 1.93448 1.52554 1.68569 1.84138 1.93538 1.81335 1.62617 1.58438 1.29774 1.16529 1.06911 1.34708 1.20328 0.97201 0.91950 0.91125 1.20430 0.94707 0.97494 1.16149 1.20817 0.95799 0.94981 0.95650 1.21303 0.99760 0.93004 1.09429 1.16957 0.89603 0.92701 0.84879 1.20925 0.97648 0.91929 1.41485 0.89391 1.27158 0.91866 1.05623 0.93638 1.70436 1.37222 1.15528 1.15434 0.83636 0.77523 0.73122 0.77045 1.19610 1.19390 1.19604 1.21466 1.01586 0.94709 0.93815 1.22302 1.02276 0.96177 0.98402 1.22587 0.98533 0.95142 0.85386 1.87895 1.71855 1.24625 1.46151 1.22561 0.98422 0.82648 0.97902 1.22302 1.02313 0.99804 0.94633 0.92120 0.91778 0.91194 0.75670 0.87342 0.88593 0.88692 0.87220 0.88098 0.89549 0.90497 0.90587 0.93010 0.89087 0.93107 0.89124 0.90582 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 8.82 37.16 0.33 -1.94 16 2 C 0.17 2.42 2.61 -67.93 -0.18 2.24 16 3 H 0.08 1.32 7.79 -51.92 -0.40 0.91 16 4 N -1.12 -18.80 4.50 -4.89 -0.02 -18.83 16 5 S 2.70 57.72 4.86 -107.50 -0.52 57.19 16 6 O -1.00 -22.10 16.18 -57.17 -0.93 -23.03 16 7 O -0.97 -23.87 16.61 -57.17 -0.95 -24.82 16 8 C -0.78 -18.13 5.70 -38.87 -0.22 -18.35 16 9 C 0.01 0.31 9.54 -39.66 -0.38 -0.07 16 10 C -0.27 -5.65 10.05 -39.29 -0.39 -6.05 16 11 C -0.05 -1.15 10.02 -39.66 -0.40 -1.55 16 12 C -0.22 -5.07 7.98 -38.87 -0.31 -5.38 16 13 C 0.16 3.98 5.30 -106.83 -0.57 3.41 16 14 C -0.49 -11.85 7.69 -37.74 -0.29 -12.14 16 15 H 0.09 1.99 5.63 -52.49 -0.30 1.69 16 16 C 0.04 1.02 4.89 -17.34 -0.08 0.93 16 17 N -0.77 -18.99 12.37 55.55 0.69 -18.30 16 18 Si 1.06 19.84 30.01 -169.99 -5.10 14.74 16 19 H -0.27 -4.77 7.11 56.52 0.40 -4.37 16 20 H -0.27 -4.68 7.11 56.52 0.40 -4.28 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 C -0.10 -1.22 2.29 -90.44 -0.21 -1.42 16 23 C -0.15 -1.76 4.90 -26.59 -0.13 -1.89 16 24 C 0.06 0.66 6.84 37.21 0.25 0.92 16 25 O -0.39 -4.71 10.77 -35.23 -0.38 -5.09 16 26 C 0.06 0.65 6.84 37.20 0.25 0.90 16 27 C -0.15 -1.66 5.15 -26.59 -0.14 -1.79 16 28 H 0.06 0.71 6.36 -51.93 -0.33 0.38 16 29 H 0.06 0.70 6.36 -51.93 -0.33 0.37 16 30 H 0.07 1.03 7.56 -51.93 -0.39 0.63 16 31 H 0.41 6.22 6.83 -34.47 -0.24 5.99 16 32 H 0.11 2.22 7.33 -52.49 -0.38 1.83 16 33 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 34 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 35 H 0.11 2.60 6.51 -52.48 -0.34 2.26 16 36 H 0.30 7.83 6.74 -40.82 -0.27 7.56 16 37 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.08 0.84 6.28 -51.93 -0.33 0.51 16 39 H 0.08 0.86 6.65 -51.93 -0.35 0.51 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.08 0.80 6.28 -51.93 -0.33 0.47 16 LS Contribution 360.56 15.07 5.43 5.43 Total: -1.00 -29.70 360.56 -10.40 -40.11 By element: Atomic # 1 Polarization: 20.93 SS G_CDS: -6.17 Total: 14.76 kcal Atomic # 6 Polarization: -39.72 SS G_CDS: -2.46 Total: -42.18 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.67 Total: -37.13 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -2.25 Total: -52.94 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.10 Total: 14.74 kcal Atomic # 16 Polarization: 57.72 SS G_CDS: -0.52 Total: 57.19 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -29.70 -10.40 -40.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601372148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.308 kcal (2) G-P(sol) polarization free energy of solvation -29.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds