Wall clock time and date at job start Tue Mar 31 2020 23:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09008 * 109.46671 * 2 1 4 4 N 1.46499 * 109.47122 * 240.00275 * 2 1 3 5 5 S 1.65606 * 120.00095 * 94.30603 * 4 2 1 6 6 O 1.42096 * 106.40085 * 310.29547 * 5 4 2 7 7 O 1.42096 * 106.40144 * 177.37534 * 5 4 2 8 8 C 1.76205 * 107.21335 * 63.83471 * 5 4 2 9 9 C 1.37641 * 120.12435 * 244.00838 * 8 5 4 10 10 C 1.38620 * 120.24300 * 180.32111 * 9 8 5 11 11 C 1.38654 * 120.49906 * 359.68019 * 10 9 8 12 12 C 1.37597 * 120.25238 * 359.97438 * 11 10 9 13 13 C 1.40696 * 120.12601 * 63.71443 * 8 5 4 14 14 C 1.41390 * 120.24867 * 359.96990 * 13 8 5 15 15 H 1.08002 * 119.99915 * 335.19747 * 14 13 8 16 16 C 1.39946 * 120.00477 * 155.18873 * 14 13 8 17 17 N 1.30825 * 119.99618 * 332.34521 * 16 14 13 18 18 Si 1.86791 * 120.00160 * 152.33644 * 16 14 13 19 19 H 1.48510 * 109.47357 * 270.00274 * 18 16 14 20 20 H 1.48502 * 109.47426 * 30.00349 * 18 16 14 21 21 H 1.48504 * 109.47154 * 150.00623 * 18 16 14 22 22 C 1.53001 * 109.47129 * 120.00034 * 2 1 3 23 23 C 1.53177 * 109.54347 * 59.82678 * 22 2 1 24 24 C 1.53105 * 109.15652 * 183.23786 * 23 22 2 25 25 O 1.42911 * 109.48515 * 57.47177 * 24 23 22 26 26 C 1.42904 * 114.09609 * 298.88969 * 25 24 23 27 27 C 1.53089 * 109.41555 * 61.16138 * 26 25 24 28 28 H 1.09004 * 109.47070 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.46926 * 299.99547 * 1 2 3 30 30 H 1.08997 * 109.47296 * 59.99775 * 1 2 3 31 31 H 0.97000 * 120.00256 * 274.30647 * 4 2 1 32 32 H 1.07994 * 119.88186 * 0.02757 * 9 8 5 33 33 H 1.07998 * 119.74410 * 179.69905 * 10 9 8 34 34 H 1.08009 * 119.87180 * 180.02562 * 11 10 9 35 35 H 1.08004 * 120.12277 * 180.02562 * 12 11 10 36 36 H 0.97004 * 120.00345 * 356.14372 * 17 16 14 37 37 H 1.09001 * 109.53789 * 180.02562 * 22 2 1 38 38 H 1.09002 * 109.51931 * 303.05452 * 23 22 2 39 39 H 1.08997 * 109.52342 * 63.24159 * 23 22 2 40 40 H 1.09002 * 109.40729 * 297.49622 * 24 23 22 41 41 H 1.08999 * 109.48426 * 177.50008 * 24 23 22 42 42 H 1.08997 * 109.47734 * 301.17294 * 26 25 24 43 43 H 1.09003 * 109.47292 * 181.14028 * 26 25 24 44 44 H 1.09000 * 109.51866 * 182.48745 * 27 26 25 45 45 H 1.08996 * 109.57955 * 62.32473 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 7 2.0183 -0.6905 -1.1962 5 16 2.3959 0.1757 -2.5562 6 8 1.2866 1.0264 -2.8109 7 8 2.8909 -0.7606 -3.5036 8 6 3.7470 1.2293 -2.1450 9 6 3.5904 2.5965 -2.1735 10 6 4.6535 3.4278 -1.8570 11 6 5.8830 2.8938 -1.5021 12 6 6.0603 1.5299 -1.4601 13 6 4.9882 0.6762 -1.7804 14 6 5.1589 -0.7268 -1.7410 15 1 4.3049 -1.3706 -1.5908 16 6 6.4343 -1.2813 -1.8967 17 7 7.3449 -0.6437 -2.5865 18 14 6.8365 -2.9316 -1.1196 19 1 7.3686 -2.7173 0.2502 20 1 5.6052 -3.7586 -1.0486 21 1 7.8558 -3.6310 -1.9426 22 6 2.0400 -0.7213 1.2492 23 6 1.5268 -2.1645 1.2531 24 6 1.9743 -2.8534 2.5450 25 8 1.4895 -2.1177 3.6702 26 6 1.9761 -0.7761 3.7437 27 6 1.5267 -0.0031 2.5010 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.1205 -1.6551 -1.1917 32 1 2.6371 3.0232 -2.4481 33 1 4.5231 4.4994 -1.8866 34 1 6.7043 3.5509 -1.2570 35 1 7.0187 1.1162 -1.1831 36 1 7.1202 0.1857 -3.0365 37 1 3.1300 -0.7215 1.2506 38 1 0.4380 -2.1640 1.2003 39 1 1.9338 -2.6981 0.3942 40 1 3.0633 -2.8909 2.5771 41 1 1.5746 -3.8671 2.5739 42 1 3.0650 -0.7865 3.7914 43 1 1.5775 -0.2933 4.6360 44 1 1.9338 1.0075 2.5338 45 1 0.4381 0.0434 2.4736 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601372148.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:26 Heat of formation + Delta-G solvation = -145.400308 kcal Electronic energy + Delta-G solvation = -29273.650456 eV Core-core repulsion = 25380.895760 eV Total energy + Delta-G solvation = -3892.754696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.63742 -39.62291 -38.16219 -37.67425 -36.71423 -35.93351 -33.63991 -32.02817 -31.95901 -31.29559 -30.15765 -27.22271 -26.30054 -24.52598 -23.59333 -23.14940 -22.91894 -20.43687 -20.30978 -20.04882 -18.59307 -17.92330 -17.53174 -16.87665 -16.71207 -16.66147 -16.15798 -15.81819 -15.68198 -15.60933 -15.41993 -15.09654 -14.58948 -14.39445 -14.35156 -14.07207 -13.91975 -13.42429 -13.21034 -13.07851 -13.03910 -12.91240 -12.83628 -12.77867 -12.74021 -12.27324 -12.20445 -12.00766 -11.95482 -11.87432 -11.63122 -11.45253 -11.22857 -11.00397 -10.99496 -10.53452 -10.20485 -10.02217 -9.69122 -9.39701 -6.72815 -0.20418 0.42266 0.85740 1.47234 1.60761 1.74156 2.25429 2.28146 2.53126 2.93082 3.03321 3.31326 3.66577 3.76689 3.81351 3.88566 4.14372 4.20878 4.26472 4.31528 4.35296 4.37521 4.44964 4.51816 4.62297 4.71760 4.79320 4.81855 4.85276 4.89805 5.00892 5.02928 5.07213 5.13730 5.18921 5.25518 5.27736 5.40823 5.47698 5.58163 5.59414 5.63574 5.83411 5.95861 6.13944 6.21298 6.31553 6.52076 6.73689 7.82716 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009362 B = 0.005890 C = 0.004731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2989.992818 B = 4752.981506 C = 5917.072269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.160 3.840 3 H 0.070 0.930 4 N -1.104 6.104 5 S 2.718 3.282 6 O -1.006 7.006 7 O -1.006 7.006 8 C -0.799 4.799 9 C -0.001 4.001 10 C -0.264 4.264 11 C -0.052 4.052 12 C -0.238 4.238 13 C 0.145 3.855 14 C -0.519 4.519 15 H 0.094 0.906 16 C 0.009 3.991 17 N -0.790 5.790 18 Si 1.104 2.896 19 H -0.254 1.254 20 H -0.249 1.249 21 H -0.273 1.273 22 C -0.092 4.092 23 C -0.153 4.153 24 C 0.059 3.941 25 O -0.398 6.398 26 C 0.059 3.941 27 C -0.148 4.148 28 H 0.074 0.926 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.418 0.582 32 H 0.122 0.878 33 H 0.128 0.872 34 H 0.125 0.875 35 H 0.099 0.901 36 H 0.288 0.712 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.048 0.952 41 H 0.108 0.892 42 H 0.047 0.953 43 H 0.110 0.890 44 H 0.078 0.922 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 -2.417 11.808 14.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.053 3.947 3 H 0.089 0.911 4 N -0.864 5.864 5 S 2.814 3.186 6 O -0.996 6.996 7 O -0.996 6.996 8 C -0.893 4.893 9 C -0.020 4.020 10 C -0.284 4.284 11 C -0.071 4.071 12 C -0.258 4.258 13 C 0.140 3.860 14 C -0.545 4.545 15 H 0.112 0.888 16 C -0.211 4.211 17 N -0.410 5.410 18 Si 0.919 3.081 19 H -0.178 1.178 20 H -0.172 1.172 21 H -0.198 1.198 22 C -0.112 4.112 23 C -0.191 4.191 24 C -0.018 4.018 25 O -0.317 6.317 26 C -0.017 4.017 27 C -0.187 4.187 28 H 0.093 0.907 29 H 0.106 0.894 30 H 0.069 0.931 31 H 0.254 0.746 32 H 0.140 0.860 33 H 0.146 0.854 34 H 0.143 0.857 35 H 0.117 0.883 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.126 0.874 42 H 0.066 0.934 43 H 0.128 0.872 44 H 0.097 0.903 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.504 -3.436 11.268 13.967 hybrid contribution 0.021 1.611 -0.626 1.729 sum -7.482 -1.825 10.642 13.137 Atomic orbital electron populations 1.22431 0.94098 1.03498 1.02961 1.20753 0.94890 0.95274 0.83796 0.91145 1.55426 1.82307 1.19228 1.29451 1.00409 0.72821 0.72699 0.72627 1.93427 1.52458 1.69019 1.84733 1.93483 1.81915 1.63519 1.60709 1.30068 1.16992 1.07966 1.34286 1.20644 0.98301 0.91830 0.91271 1.20843 0.94015 0.99146 1.14416 1.21176 0.96980 0.94587 0.94342 1.21358 0.99424 0.94125 1.10905 1.17249 0.90321 0.93332 0.85101 1.21137 0.98368 0.92201 1.42841 0.88769 1.28511 0.91623 1.08109 0.92851 1.70552 1.37736 1.15519 1.17225 0.83217 0.78223 0.69650 0.76984 1.17798 1.17217 1.19771 1.21408 1.00421 0.95771 0.93649 1.22311 1.02780 0.95177 0.98787 1.22667 0.98483 0.95845 0.84786 1.87884 1.72071 1.25247 1.46513 1.22670 0.98399 0.82200 0.98443 1.22293 1.02872 0.99754 0.93740 0.90665 0.89393 0.93074 0.74573 0.85975 0.85378 0.85735 0.88260 0.89922 0.91524 0.89550 0.90667 0.93352 0.87383 0.93449 0.87183 0.90291 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 8.82 71.98 0.63 -3.46 16 2 C 0.16 4.49 2.61 44.99 0.12 4.61 16 3 H 0.07 2.18 7.79 -2.38 -0.02 2.16 16 4 N -1.10 -36.80 4.50 -169.38 -0.76 -37.56 16 5 S 2.72 117.01 4.86 -56.49 -0.27 116.74 16 6 O -1.01 -44.46 16.18 -128.00 -2.07 -46.53 16 7 O -1.01 -50.49 16.61 -128.00 -2.13 -52.62 16 8 C -0.80 -37.28 5.70 22.73 0.13 -37.15 16 9 C 0.00 -0.03 9.54 22.22 0.21 0.18 16 10 C -0.26 -10.73 10.05 22.46 0.23 -10.50 16 11 C -0.05 -2.20 10.02 22.22 0.22 -1.98 16 12 C -0.24 -11.40 7.98 22.73 0.18 -11.22 16 13 C 0.14 7.18 5.30 -21.29 -0.11 7.07 16 14 C -0.52 -25.44 7.69 23.46 0.18 -25.26 16 15 H 0.09 4.32 5.63 -2.91 -0.02 4.31 16 16 C 0.01 0.44 4.89 85.26 0.42 0.86 16 17 N -0.79 -40.38 12.37 21.83 0.27 -40.11 16 18 Si 1.10 39.55 30.01 68.60 2.06 41.61 16 19 H -0.25 -8.34 7.11 99.48 0.71 -7.63 16 20 H -0.25 -7.99 7.11 99.48 0.71 -7.29 16 21 H -0.27 -9.78 7.11 99.48 0.71 -9.08 16 22 C -0.09 -2.22 2.29 -10.68 -0.02 -2.25 16 23 C -0.15 -3.19 4.90 30.69 0.15 -3.04 16 24 C 0.06 1.17 6.84 72.02 0.49 1.66 16 25 O -0.40 -8.75 10.77 -148.98 -1.60 -10.35 16 26 C 0.06 1.13 6.84 72.01 0.49 1.62 16 27 C -0.15 -2.92 5.15 30.68 0.16 -2.76 16 28 H 0.07 1.57 6.36 -2.38 -0.02 1.56 16 29 H 0.09 1.68 6.36 -2.39 -0.02 1.67 16 30 H 0.05 1.43 7.56 -2.39 -0.02 1.41 16 31 H 0.42 12.49 6.83 -96.74 -0.66 11.83 16 32 H 0.12 4.88 7.33 -2.91 -0.02 4.86 16 33 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 35 H 0.10 4.88 6.51 -2.91 -0.02 4.86 16 36 H 0.29 15.48 6.74 -92.71 -0.62 14.85 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.09 1.64 6.28 -2.39 -0.01 1.63 16 39 H 0.07 1.57 6.65 -2.39 -0.02 1.55 16 40 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.09 1.55 6.28 -2.39 -0.01 1.53 16 Total: -1.00 -64.44 360.56 -0.53 -64.97 By element: Atomic # 1 Polarization: 44.98 SS G_CDS: 0.50 Total: 45.48 kcal Atomic # 6 Polarization: -85.10 SS G_CDS: 3.48 Total: -81.63 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -0.49 Total: -77.67 kcal Atomic # 8 Polarization: -103.70 SS G_CDS: -5.80 Total: -109.51 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.06 Total: 41.61 kcal Atomic # 16 Polarization: 117.01 SS G_CDS: -0.27 Total: 116.74 kcal Total: -64.44 -0.53 -64.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601372148.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.432 kcal (2) G-P(sol) polarization free energy of solvation -64.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds