Wall clock time and date at job start Tue Mar 31 2020 23:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47302 * 2 1 4 4 O 1.42902 * 109.47337 * 239.99921 * 2 1 3 5 5 C 1.52995 * 109.47289 * 120.00063 * 2 1 3 6 6 C 1.53000 * 109.47394 * 183.50012 * 5 2 1 7 7 H 1.08997 * 109.87114 * 303.75686 * 6 5 2 8 8 C 1.54322 * 109.88442 * 64.77340 * 6 5 2 9 9 C 1.55159 * 102.94023 * 141.61003 * 8 6 5 10 10 C 1.54904 * 101.58323 * 324.50224 * 9 8 6 11 11 N 1.47025 * 109.88189 * 182.74470 * 6 5 2 12 12 S 1.65594 * 125.64724 * 61.60772 * 11 6 5 13 13 O 1.42100 * 106.40917 * 29.44611 * 12 11 6 14 14 O 1.42101 * 106.40089 * 162.36620 * 12 11 6 15 15 C 1.76203 * 107.22032 * 275.90417 * 12 11 6 16 16 C 1.37631 * 120.12703 * 115.15003 * 15 12 11 17 17 C 1.38617 * 120.24655 * 180.02562 * 16 15 12 18 18 C 1.38653 * 120.50042 * 359.97438 * 17 16 15 19 19 C 1.37596 * 120.24889 * 0.02562 * 18 17 16 20 20 C 1.40700 * 120.12529 * 294.87822 * 15 12 11 21 21 C 1.41391 * 120.24500 * 359.97438 * 20 15 12 22 22 H 1.08000 * 120.00428 * 328.83116 * 21 20 15 23 23 C 1.39951 * 120.00219 * 148.83490 * 21 20 15 24 24 N 1.30824 * 119.99693 * 343.84943 * 23 21 20 25 25 Si 1.86797 * 120.00136 * 163.85100 * 23 21 20 26 26 H 1.48492 * 109.47312 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46989 * 119.99891 * 25 23 21 28 28 H 1.48497 * 109.47143 * 239.99700 * 25 23 21 29 29 H 1.09004 * 109.46912 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47474 * 300.00094 * 1 2 3 31 31 H 1.09007 * 109.47224 * 60.00681 * 1 2 3 32 32 H 0.96705 * 113.99811 * 295.44663 * 4 2 1 33 33 H 1.09008 * 109.47064 * 303.49642 * 5 2 1 34 34 H 1.08998 * 109.47724 * 63.49271 * 5 2 1 35 35 H 1.08991 * 110.72015 * 259.97917 * 8 6 5 36 36 H 1.09001 * 110.71828 * 23.07337 * 8 6 5 37 37 H 1.09001 * 110.99863 * 82.57908 * 9 8 6 38 38 H 1.09005 * 111.00143 * 206.38311 * 9 8 6 39 39 H 1.08999 * 110.36757 * 155.84661 * 10 9 8 40 40 H 1.09004 * 110.36355 * 278.05752 * 10 9 8 41 41 H 1.07995 * 119.88053 * 0.02562 * 16 15 12 42 42 H 1.08006 * 119.74442 * 179.97438 * 17 16 15 43 43 H 1.08013 * 119.87298 * 180.02562 * 18 17 16 44 44 H 1.08010 * 120.12415 * 179.97438 * 19 18 17 45 45 H 0.96995 * 119.99949 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5675 -0.6454 1.2940 7 1 3.9861 -1.0603 0.3771 8 6 4.0156 0.8221 1.4585 9 6 5.2277 0.7095 2.4205 10 6 4.7844 -0.4516 3.3450 11 7 4.0712 -1.3919 2.4562 12 16 3.8699 -3.0139 2.7225 13 8 3.7882 -3.6239 1.4417 14 8 4.8341 -3.3829 3.6989 15 6 2.2917 -3.2268 3.4765 16 6 1.2981 -3.9139 2.8171 17 6 0.0554 -4.0824 3.4077 18 6 -0.2014 -3.5626 4.6672 19 6 0.7771 -2.8722 5.3449 20 6 2.0442 -2.6999 4.7575 21 6 3.0594 -1.9976 5.4470 22 1 4.0961 -2.2589 5.2942 23 6 2.7208 -0.9640 6.3277 24 7 1.5256 -0.4336 6.2851 25 14 3.9754 -0.3417 7.5638 26 1 5.2420 -1.1010 7.4086 27 1 4.2316 1.1015 7.3252 28 1 3.4500 -0.5302 8.9399 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 1.7796 -1.6132 -1.1986 33 1 1.6264 -0.2448 2.1381 34 1 1.7288 -1.7654 1.2185 35 1 4.3213 1.2417 0.5002 36 1 3.2207 1.4204 1.9038 37 1 6.1358 0.4506 1.8760 38 1 5.3637 1.6308 2.9870 39 1 5.6539 -0.9365 3.7886 40 1 4.1179 -0.0825 4.1245 41 1 1.4872 -4.3233 1.8358 42 1 -0.7186 -4.6226 2.8828 43 1 -1.1732 -3.7002 5.1181 44 1 0.5747 -2.4678 6.3257 45 1 1.2908 0.2825 6.8957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601375970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:26 Heat of formation + Delta-G solvation = -120.300974 kcal Electronic energy + Delta-G solvation = -29961.711486 eV Core-core repulsion = 26070.045178 eV Total energy + Delta-G solvation = -3891.666307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -38.82742 -37.62851 -36.87617 -36.29595 -34.88925 -33.93638 -31.93352 -30.54530 -30.17127 -29.65540 -29.31443 -25.60164 -25.21258 -22.03073 -21.73065 -21.36790 -21.18231 -20.24383 -18.01297 -17.70755 -17.04447 -16.44571 -15.85773 -15.62599 -15.44129 -15.27902 -14.61351 -14.37707 -13.84552 -13.51582 -13.42505 -13.27254 -13.12670 -12.80299 -12.77209 -12.51637 -12.10988 -11.96276 -11.80422 -11.67248 -11.41856 -11.30066 -11.28787 -11.17342 -11.16569 -10.99620 -10.76149 -10.63623 -10.60134 -10.49825 -10.34797 -10.26748 -9.91556 -9.83206 -9.46848 -9.25106 -8.26771 -8.02492 -7.64532 -7.12679 -4.80494 1.47604 2.30075 2.65470 2.93517 3.02294 3.03596 3.73295 3.87051 4.32167 4.55939 4.73578 4.83821 4.88565 5.06385 5.21481 5.28606 5.31283 5.36415 5.52744 5.69933 5.76608 5.77570 5.90478 5.96958 5.98956 6.06074 6.14768 6.17168 6.19986 6.25448 6.28849 6.34411 6.50622 6.60215 6.64348 6.72839 6.84718 6.87940 6.99526 7.16416 7.29481 7.46349 7.63267 7.75162 7.82688 7.90618 8.31566 8.47894 8.60454 9.82764 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010021 B = 0.006613 C = 0.005652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2793.401787 B = 4233.141606 C = 4952.853933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.107 3.893 3 H 0.097 0.903 4 O -0.567 6.567 5 C -0.173 4.173 6 C 0.162 3.838 7 H 0.079 0.921 8 C -0.122 4.122 9 C -0.132 4.132 10 C 0.122 3.878 11 N -1.000 6.000 12 S 2.718 3.282 13 O -0.994 6.994 14 O -0.974 6.974 15 C -0.773 4.773 16 C -0.003 4.003 17 C -0.247 4.247 18 C -0.076 4.076 19 C -0.157 4.157 20 C 0.196 3.804 21 C -0.476 4.476 22 H 0.114 0.886 23 C 0.085 3.915 24 N -0.774 5.774 25 Si 0.898 3.102 26 H -0.249 1.249 27 H -0.268 1.268 28 H -0.268 1.268 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.377 0.623 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.116 0.884 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.424 5.660 -5.511 7.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.048 3.952 3 H 0.115 0.885 4 O -0.373 6.373 5 C -0.213 4.213 6 C 0.055 3.945 7 H 0.097 0.903 8 C -0.161 4.161 9 C -0.171 4.171 10 C -0.003 4.003 11 N -0.836 5.836 12 S 2.818 3.182 13 O -0.985 6.985 14 O -0.964 6.964 15 C -0.868 4.868 16 C -0.023 4.023 17 C -0.268 4.268 18 C -0.095 4.095 19 C -0.176 4.176 20 C 0.192 3.808 21 C -0.504 4.504 22 H 0.131 0.869 23 C -0.137 4.137 24 N -0.397 5.397 25 Si 0.721 3.279 26 H -0.172 1.172 27 H -0.193 1.193 28 H -0.193 1.193 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.224 0.776 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.134 0.866 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.165 5.705 -5.748 8.182 hybrid contribution -0.878 -0.014 1.279 1.551 sum 0.287 5.690 -4.469 7.241 Atomic orbital electron populations 1.22475 0.96686 1.02731 1.02239 1.21847 0.92637 0.96507 0.84205 0.88500 1.86500 1.80655 1.27040 1.43112 1.22876 0.96425 1.02527 0.99425 1.21105 0.92733 0.92072 0.88579 0.90297 1.22668 0.98142 0.95543 0.99721 1.22790 0.97909 0.98616 0.97828 1.22137 0.96268 0.89248 0.92694 1.58612 1.68726 1.25611 1.30615 1.00510 0.74706 0.70509 0.72444 1.93434 1.88476 1.74524 1.42073 1.93467 1.60792 1.80777 1.61406 1.29908 1.22093 1.26608 1.08184 1.20208 0.92264 0.93174 0.96631 1.20467 0.97109 1.10850 0.98352 1.20872 0.97414 0.96477 0.94723 1.21372 0.94436 1.01543 1.00272 1.16966 0.92219 0.84549 0.87084 1.20455 0.96616 1.13065 1.20241 0.86852 1.25949 0.96051 0.95514 0.96182 1.69814 1.20127 1.18605 1.31190 0.86371 0.82048 0.79294 0.80160 1.17233 1.19298 1.19331 0.92205 0.91517 0.92292 0.77573 0.89456 0.90872 0.90773 0.90730 0.91192 0.90579 0.90810 0.90092 0.87636 0.88802 0.88926 0.86649 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 9.56 37.16 0.36 -1.89 16 2 C 0.11 1.42 3.48 -26.73 -0.09 1.33 16 3 H 0.10 1.18 7.26 -51.93 -0.38 0.81 16 4 O -0.57 -7.75 12.77 -35.23 -0.45 -8.20 16 5 C -0.17 -2.75 4.21 -26.73 -0.11 -2.87 16 6 C 0.16 2.61 2.88 -66.95 -0.19 2.41 16 7 H 0.08 1.29 7.70 -51.93 -0.40 0.89 16 8 C -0.12 -1.61 5.44 -24.90 -0.14 -1.74 16 9 C -0.13 -1.76 7.08 -24.58 -0.17 -1.93 16 10 C 0.12 2.10 5.82 -2.36 -0.01 2.09 16 11 N -1.00 -18.87 3.35 -104.18 -0.35 -19.21 16 12 S 2.72 60.41 4.79 -107.50 -0.52 59.89 16 13 O -0.99 -22.69 16.63 -57.17 -0.95 -23.64 16 14 O -0.97 -23.94 14.96 -57.17 -0.86 -24.80 16 15 C -0.77 -18.00 5.30 -38.87 -0.21 -18.21 16 16 C 0.00 -0.06 8.82 -39.66 -0.35 -0.41 16 17 C -0.25 -5.23 10.05 -39.29 -0.39 -5.62 16 18 C -0.08 -1.65 10.02 -39.66 -0.40 -2.05 16 19 C -0.16 -3.74 8.66 -38.88 -0.34 -4.08 16 20 C 0.20 4.82 5.50 -106.83 -0.59 4.24 16 21 C -0.48 -11.44 6.26 -37.74 -0.24 -11.67 16 22 H 0.11 2.80 5.09 -52.49 -0.27 2.53 16 23 C 0.08 1.89 4.76 -17.34 -0.08 1.80 16 24 N -0.77 -17.48 11.31 55.55 0.63 -16.85 16 25 Si 0.90 17.03 29.59 -169.99 -5.03 12.00 16 26 H -0.25 -4.83 7.11 56.52 0.40 -4.43 16 27 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 28 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 32 H 0.38 4.41 9.03 45.56 0.41 4.82 16 33 H 0.09 1.51 8.08 -51.92 -0.42 1.09 16 34 H 0.07 1.28 6.57 -51.93 -0.34 0.94 16 35 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.95 7.78 -51.93 -0.40 0.55 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.07 1.28 7.80 -51.93 -0.40 0.87 16 40 H 0.08 1.50 6.64 -51.93 -0.35 1.15 16 41 H 0.11 2.15 7.32 -52.49 -0.38 1.77 16 42 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 43 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 44 H 0.12 2.79 6.59 -52.48 -0.35 2.44 16 45 H 0.29 5.85 8.30 -40.82 -0.34 5.51 16 LS Contribution 365.71 15.07 5.51 5.51 Total: -1.00 -28.39 365.71 -10.76 -39.15 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -5.79 Total: 14.77 kcal Atomic # 6 Polarization: -35.65 SS G_CDS: -2.96 Total: -38.61 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.28 Total: -36.07 kcal Atomic # 8 Polarization: -54.39 SS G_CDS: -2.26 Total: -56.64 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -5.03 Total: 12.00 kcal Atomic # 16 Polarization: 60.41 SS G_CDS: -0.52 Total: 59.89 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.39 -10.76 -39.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601375970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.150 kcal (2) G-P(sol) polarization free energy of solvation -28.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds