Wall clock time and date at job start Tue Mar 31 2020 23:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46875 * 2 1 4 4 O 1.42896 * 109.46769 * 240.00120 * 2 1 3 5 5 C 1.52997 * 109.47268 * 120.00036 * 2 1 3 6 6 C 1.52995 * 109.47066 * 184.90009 * 5 2 1 7 7 H 1.09001 * 109.87424 * 55.59722 * 6 5 2 8 8 C 1.54327 * 109.88333 * 294.57961 * 6 5 2 9 9 C 1.55160 * 102.93891 * 218.38908 * 8 6 5 10 10 C 1.54909 * 101.58443 * 35.50382 * 9 8 6 11 11 N 1.47025 * 109.88562 * 176.76922 * 6 5 2 12 12 S 1.65600 * 125.64742 * 298.34313 * 11 6 5 13 13 O 1.42094 * 106.40521 * 29.85598 * 12 11 6 14 14 O 1.42098 * 106.40367 * 162.77611 * 12 11 6 15 15 C 1.76197 * 107.21589 * 276.31565 * 12 11 6 16 16 C 1.37641 * 120.12730 * 113.73340 * 15 12 11 17 17 C 1.38621 * 120.24775 * 179.97438 * 16 15 12 18 18 C 1.38650 * 120.49920 * 0.02649 * 17 16 15 19 19 C 1.37602 * 120.25409 * 0.02562 * 18 17 16 20 20 C 1.40698 * 120.12930 * 293.45548 * 15 12 11 21 21 C 1.41392 * 120.24176 * 0.02562 * 20 15 12 22 22 H 1.08005 * 120.00203 * 326.35153 * 21 20 15 23 23 C 1.39953 * 120.00240 * 146.35177 * 21 20 15 24 24 N 1.30820 * 119.99636 * 348.40772 * 23 21 20 25 25 Si 1.86804 * 120.00175 * 168.40475 * 23 21 20 26 26 H 1.48498 * 109.46679 * 4.91001 * 25 23 21 27 27 H 1.48497 * 109.46923 * 124.90643 * 25 23 21 28 28 H 1.48499 * 109.46877 * 244.90658 * 25 23 21 29 29 H 1.09008 * 109.47209 * 304.79652 * 1 2 3 30 30 H 1.08994 * 109.47430 * 64.80165 * 1 2 3 31 31 H 1.09008 * 109.46856 * 184.80336 * 1 2 3 32 32 H 0.96700 * 114.00446 * 305.55306 * 4 2 1 33 33 H 1.08999 * 109.47221 * 64.89971 * 5 2 1 34 34 H 1.09002 * 109.47427 * 304.90016 * 5 2 1 35 35 H 1.08995 * 110.71856 * 336.75221 * 8 6 5 36 36 H 1.08996 * 110.71750 * 100.02345 * 8 6 5 37 37 H 1.09003 * 110.99729 * 153.58154 * 9 8 6 38 38 H 1.08997 * 111.00306 * 277.42494 * 9 8 6 39 39 H 1.08994 * 110.36662 * 81.82561 * 10 9 8 40 40 H 1.08996 * 110.36235 * 204.04246 * 10 9 8 41 41 H 1.07997 * 119.87462 * 0.02562 * 16 15 12 42 42 H 1.07993 * 119.74707 * 179.97438 * 17 16 15 43 43 H 1.08000 * 119.87590 * 179.97438 * 18 17 16 44 44 H 1.07991 * 120.13004 * 179.97438 * 19 18 17 45 45 H 0.97005 * 120.00331 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5650 -0.6154 1.3123 7 1 3.8656 0.4318 1.2766 8 6 4.1938 -1.3824 0.1299 9 6 5.4494 -2.0342 0.7670 10 6 4.9389 -2.3660 2.1914 11 7 4.0588 -1.2386 2.5489 12 16 3.6881 -0.7542 4.0885 13 8 2.3853 -0.1901 4.0290 14 8 4.0275 -1.8378 4.9428 15 6 4.7829 0.5642 4.4982 16 6 4.2916 1.8352 4.6922 17 6 5.1506 2.8742 5.0151 18 6 6.5120 2.6468 5.1459 19 6 7.0255 1.3845 4.9555 20 6 6.1620 0.3207 4.6341 21 6 6.6774 -0.9819 4.4424 22 1 6.0889 -1.8425 4.7244 23 6 7.9502 -1.1562 3.8871 24 7 8.5690 -0.1424 3.3388 25 14 8.7654 -2.8365 3.9290 26 1 7.8182 -3.8322 4.4915 27 1 9.1441 -3.2374 2.5502 28 1 9.9819 -2.7753 4.7784 29 1 -0.3634 0.5865 0.8440 30 1 -0.3634 0.4375 -0.9298 31 1 -0.3633 -1.0241 0.0861 32 1 1.6531 -1.5671 -1.2769 33 1 1.7502 -1.7711 1.2064 34 1 1.6068 -0.2606 2.1371 35 1 3.5099 -2.1454 -0.2421 36 1 4.4781 -0.6960 -0.6675 37 1 5.7327 -2.9409 0.2324 38 1 6.2796 -1.3288 0.8039 39 1 4.3761 -3.2994 2.1848 40 1 5.7746 -2.4327 2.8879 41 1 3.2328 2.0236 4.5933 42 1 4.7564 3.8683 5.1652 43 1 7.1722 3.4637 5.3974 44 1 8.0863 1.2097 5.0574 45 1 9.4513 -0.2630 2.9542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601375971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:30 Heat of formation + Delta-G solvation = -115.369363 kcal Electronic energy + Delta-G solvation = -29576.060211 eV Core-core repulsion = 25684.607754 eV Total energy + Delta-G solvation = -3891.452457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -38.89653 -37.62018 -36.86111 -36.32639 -34.89799 -33.88244 -32.01521 -30.39613 -30.14417 -29.59801 -29.42561 -25.68812 -25.13948 -21.97223 -21.55526 -21.28614 -21.15790 -20.54334 -18.05692 -17.64705 -17.09483 -16.48433 -15.93948 -15.62396 -15.35978 -15.22981 -14.57069 -14.33410 -14.02222 -13.52747 -13.39869 -13.24333 -13.16765 -12.78476 -12.74815 -12.39914 -12.10221 -11.99551 -11.85828 -11.72593 -11.57162 -11.28961 -11.21116 -11.17747 -11.14973 -10.99178 -10.77206 -10.62307 -10.52298 -10.42158 -10.25479 -10.08244 -9.87066 -9.75050 -9.46223 -9.21775 -8.28603 -8.02331 -7.58158 -7.05434 -4.78404 1.48306 2.31780 2.68873 2.96003 3.04036 3.05612 3.76174 3.87970 4.37489 4.43475 4.72536 4.87342 4.97235 5.01754 5.12540 5.31999 5.32820 5.41687 5.51907 5.65373 5.71429 5.79638 5.87120 6.00549 6.02140 6.06541 6.19697 6.20619 6.24561 6.35135 6.36363 6.43089 6.50421 6.60447 6.73824 6.76229 6.88807 6.93086 7.02046 7.20638 7.32213 7.48702 7.67155 7.69060 7.77288 7.93188 8.34248 8.51786 8.62988 9.90160 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.005757 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.434715 B = 4862.515216 C = 6004.962526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.106 3.894 3 H 0.099 0.901 4 O -0.561 6.561 5 C -0.185 4.185 6 C 0.162 3.838 7 H 0.069 0.931 8 C -0.104 4.104 9 C -0.135 4.135 10 C 0.118 3.882 11 N -0.998 5.998 12 S 2.720 3.280 13 O -0.993 6.993 14 O -0.972 6.972 15 C -0.773 4.773 16 C -0.005 4.005 17 C -0.246 4.246 18 C -0.077 4.077 19 C -0.154 4.154 20 C 0.197 3.803 21 C -0.482 4.482 22 H 0.116 0.884 23 C 0.084 3.916 24 N -0.780 5.780 25 Si 0.898 3.102 26 H -0.249 1.249 27 H -0.268 1.268 28 H -0.268 1.268 29 H 0.068 0.932 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.369 0.631 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.118 0.882 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.158 -2.615 -7.711 10.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.047 3.953 3 H 0.116 0.884 4 O -0.366 6.366 5 C -0.224 4.224 6 C 0.055 3.945 7 H 0.087 0.913 8 C -0.143 4.143 9 C -0.174 4.174 10 C -0.007 4.007 11 N -0.833 5.833 12 S 2.819 3.181 13 O -0.984 6.984 14 O -0.963 6.963 15 C -0.868 4.868 16 C -0.025 4.025 17 C -0.266 4.266 18 C -0.096 4.096 19 C -0.174 4.174 20 C 0.193 3.807 21 C -0.510 4.510 22 H 0.134 0.866 23 C -0.137 4.137 24 N -0.403 5.403 25 Si 0.721 3.279 26 H -0.172 1.172 27 H -0.193 1.193 28 H -0.192 1.192 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.216 0.784 33 H 0.084 0.916 34 H 0.125 0.875 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.070 0.930 40 H 0.114 0.886 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.136 0.864 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.315 -2.371 -7.305 9.943 hybrid contribution 0.853 -0.409 0.041 0.947 sum -5.462 -2.780 -7.264 9.504 Atomic orbital electron populations 1.22504 0.96671 1.02447 1.02588 1.21845 0.92471 0.96786 0.84223 0.88360 1.86621 1.72492 1.32273 1.45233 1.23120 0.96802 1.01824 1.00640 1.21115 0.92054 0.97153 0.84180 0.91300 1.22590 0.96211 0.99267 0.96259 1.22835 0.98415 1.00844 0.95345 1.22130 0.93751 0.87580 0.97251 1.58518 1.61585 1.42259 1.20931 1.00501 0.72785 0.73747 0.71023 1.93377 1.38258 1.80406 1.86362 1.93468 1.84905 1.54225 1.63677 1.29995 1.10787 1.13385 1.32674 1.20258 0.97767 0.91537 0.92905 1.20509 0.93907 0.97513 1.14684 1.20907 0.94670 0.96443 0.97550 1.21421 0.99829 0.92538 1.03605 1.17011 0.88347 0.93219 0.82152 1.20472 1.01068 0.94316 1.35177 0.86597 1.25939 0.96284 0.99085 0.92403 1.69795 1.13474 1.32389 1.24648 0.86382 0.80152 0.82099 0.79287 1.17238 1.19252 1.19242 0.91303 0.92098 0.92501 0.78424 0.91571 0.87525 0.91210 0.90518 0.91166 0.90335 0.92997 0.88598 0.87435 0.88665 0.88789 0.86408 0.90339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.85 9.49 37.16 0.35 -1.49 16 2 C 0.11 1.25 3.58 -26.73 -0.10 1.16 16 3 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 4 O -0.56 -6.21 10.64 -35.23 -0.37 -6.59 16 5 C -0.18 -2.64 4.47 -26.73 -0.12 -2.76 16 6 C 0.16 2.63 3.18 -66.95 -0.21 2.42 16 7 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 8 C -0.10 -1.45 4.81 -24.89 -0.12 -1.57 16 9 C -0.14 -2.06 7.08 -24.58 -0.17 -2.24 16 10 C 0.12 2.09 6.71 -2.53 -0.02 2.08 16 11 N -1.00 -18.97 3.38 -104.42 -0.35 -19.33 16 12 S 2.72 60.23 5.30 -107.50 -0.57 59.66 16 13 O -0.99 -21.87 14.06 -57.18 -0.80 -22.68 16 14 O -0.97 -23.81 15.09 -57.18 -0.86 -24.67 16 15 C -0.77 -18.61 5.97 -38.87 -0.23 -18.84 16 16 C 0.00 -0.11 9.54 -39.66 -0.38 -0.49 16 17 C -0.25 -5.37 10.05 -39.29 -0.39 -5.77 16 18 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 19 C -0.15 -3.80 8.63 -38.87 -0.34 -4.13 16 20 C 0.20 5.00 5.48 -106.82 -0.59 4.42 16 21 C -0.48 -11.86 6.19 -37.74 -0.23 -12.10 16 22 H 0.12 2.92 4.71 -52.48 -0.25 2.67 16 23 C 0.08 1.91 5.03 -17.34 -0.09 1.83 16 24 N -0.78 -18.18 11.22 55.55 0.62 -17.56 16 25 Si 0.90 17.31 29.13 -169.99 -4.95 12.36 16 26 H -0.25 -4.86 7.11 56.52 0.40 -4.45 16 27 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 28 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 29 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 32 H 0.37 2.89 8.75 45.56 0.40 3.29 16 33 H 0.07 0.87 8.07 -51.93 -0.42 0.46 16 34 H 0.11 1.77 5.56 -51.93 -0.29 1.48 16 35 H 0.07 0.83 6.75 -51.93 -0.35 0.48 16 36 H 0.08 1.05 7.96 -51.93 -0.41 0.63 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.90 4.52 -51.93 -0.23 1.67 16 41 H 0.11 2.24 7.32 -52.49 -0.38 1.86 16 42 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.12 2.92 6.62 -52.49 -0.35 2.57 16 45 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -28.66 360.18 -10.54 -39.20 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: -5.65 Total: 13.78 kcal Atomic # 6 Polarization: -36.59 SS G_CDS: -3.03 Total: -39.62 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.27 Total: -36.88 kcal Atomic # 8 Polarization: -51.89 SS G_CDS: -2.04 Total: -53.93 kcal Atomic # 14 Polarization: 17.31 SS G_CDS: -4.95 Total: 12.36 kcal Atomic # 16 Polarization: 60.23 SS G_CDS: -0.57 Total: 59.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -28.66 -10.54 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601375971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.165 kcal (2) G-P(sol) polarization free energy of solvation -28.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds