Wall clock time and date at job start Tue Mar 31 2020 23:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46875 * 2 1 4 4 O 1.42896 * 109.46769 * 240.00120 * 2 1 3 5 5 C 1.52997 * 109.47268 * 120.00036 * 2 1 3 6 6 C 1.52995 * 109.47066 * 184.90009 * 5 2 1 7 7 H 1.09001 * 109.87424 * 55.59722 * 6 5 2 8 8 C 1.54327 * 109.88333 * 294.57961 * 6 5 2 9 9 C 1.55160 * 102.93891 * 218.38908 * 8 6 5 10 10 C 1.54909 * 101.58443 * 35.50382 * 9 8 6 11 11 N 1.47025 * 109.88562 * 176.76922 * 6 5 2 12 12 S 1.65600 * 125.64742 * 298.34313 * 11 6 5 13 13 O 1.42094 * 106.40521 * 29.85598 * 12 11 6 14 14 O 1.42098 * 106.40367 * 162.77611 * 12 11 6 15 15 C 1.76197 * 107.21589 * 276.31565 * 12 11 6 16 16 C 1.37641 * 120.12730 * 113.73340 * 15 12 11 17 17 C 1.38621 * 120.24775 * 179.97438 * 16 15 12 18 18 C 1.38650 * 120.49920 * 0.02649 * 17 16 15 19 19 C 1.37602 * 120.25409 * 0.02562 * 18 17 16 20 20 C 1.40698 * 120.12930 * 293.45548 * 15 12 11 21 21 C 1.41392 * 120.24176 * 0.02562 * 20 15 12 22 22 H 1.08005 * 120.00203 * 326.35153 * 21 20 15 23 23 C 1.39953 * 120.00240 * 146.35177 * 21 20 15 24 24 N 1.30820 * 119.99636 * 348.40772 * 23 21 20 25 25 Si 1.86804 * 120.00175 * 168.40475 * 23 21 20 26 26 H 1.48498 * 109.46679 * 4.91001 * 25 23 21 27 27 H 1.48497 * 109.46923 * 124.90643 * 25 23 21 28 28 H 1.48499 * 109.46877 * 244.90658 * 25 23 21 29 29 H 1.09008 * 109.47209 * 304.79652 * 1 2 3 30 30 H 1.08994 * 109.47430 * 64.80165 * 1 2 3 31 31 H 1.09008 * 109.46856 * 184.80336 * 1 2 3 32 32 H 0.96700 * 114.00446 * 305.55306 * 4 2 1 33 33 H 1.08999 * 109.47221 * 64.89971 * 5 2 1 34 34 H 1.09002 * 109.47427 * 304.90016 * 5 2 1 35 35 H 1.08995 * 110.71856 * 336.75221 * 8 6 5 36 36 H 1.08996 * 110.71750 * 100.02345 * 8 6 5 37 37 H 1.09003 * 110.99729 * 153.58154 * 9 8 6 38 38 H 1.08997 * 111.00306 * 277.42494 * 9 8 6 39 39 H 1.08994 * 110.36662 * 81.82561 * 10 9 8 40 40 H 1.08996 * 110.36235 * 204.04246 * 10 9 8 41 41 H 1.07997 * 119.87462 * 0.02562 * 16 15 12 42 42 H 1.07993 * 119.74707 * 179.97438 * 17 16 15 43 43 H 1.08000 * 119.87590 * 179.97438 * 18 17 16 44 44 H 1.07991 * 120.13004 * 179.97438 * 19 18 17 45 45 H 0.97005 * 120.00331 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0062 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5650 -0.6154 1.3123 7 1 3.8656 0.4318 1.2766 8 6 4.1938 -1.3824 0.1299 9 6 5.4494 -2.0342 0.7670 10 6 4.9389 -2.3660 2.1914 11 7 4.0588 -1.2386 2.5489 12 16 3.6881 -0.7542 4.0885 13 8 2.3853 -0.1901 4.0290 14 8 4.0275 -1.8378 4.9428 15 6 4.7829 0.5642 4.4982 16 6 4.2916 1.8352 4.6922 17 6 5.1506 2.8742 5.0151 18 6 6.5120 2.6468 5.1459 19 6 7.0255 1.3845 4.9555 20 6 6.1620 0.3207 4.6341 21 6 6.6774 -0.9819 4.4424 22 1 6.0889 -1.8425 4.7244 23 6 7.9502 -1.1562 3.8871 24 7 8.5690 -0.1424 3.3388 25 14 8.7654 -2.8365 3.9290 26 1 7.8182 -3.8322 4.4915 27 1 9.1441 -3.2374 2.5502 28 1 9.9819 -2.7753 4.7784 29 1 -0.3634 0.5865 0.8440 30 1 -0.3634 0.4375 -0.9298 31 1 -0.3633 -1.0241 0.0861 32 1 1.6531 -1.5671 -1.2769 33 1 1.7502 -1.7711 1.2064 34 1 1.6068 -0.2606 2.1371 35 1 3.5099 -2.1454 -0.2421 36 1 4.4781 -0.6960 -0.6675 37 1 5.7327 -2.9409 0.2324 38 1 6.2796 -1.3288 0.8039 39 1 4.3761 -3.2994 2.1848 40 1 5.7746 -2.4327 2.8879 41 1 3.2328 2.0236 4.5933 42 1 4.7564 3.8683 5.1652 43 1 7.1722 3.4637 5.3974 44 1 8.0863 1.2097 5.0574 45 1 9.4513 -0.2630 2.9542 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601375971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:29 Heat of formation + Delta-G solvation = -134.069855 kcal Electronic energy + Delta-G solvation = -29576.871125 eV Core-core repulsion = 25684.607754 eV Total energy + Delta-G solvation = -3892.263371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.08368 -39.40264 -38.18533 -37.84473 -36.70926 -35.65053 -33.03652 -32.06772 -31.62763 -31.38003 -30.49984 -27.40074 -26.36116 -23.55072 -23.01039 -22.85782 -22.48157 -21.77666 -19.73151 -19.40373 -18.65313 -17.87998 -17.36350 -17.10492 -16.75753 -16.41837 -16.13487 -15.95441 -15.26270 -15.10475 -14.91157 -14.62834 -14.52373 -14.44822 -14.16913 -13.80161 -13.56212 -13.28446 -13.18316 -13.00394 -12.99219 -12.92735 -12.85889 -12.81248 -12.64583 -12.41435 -12.29999 -12.15609 -11.81263 -11.67358 -11.62360 -11.47178 -11.31730 -11.16969 -10.99659 -10.74368 -9.90079 -9.67302 -9.41194 -8.79045 -6.61901 -0.21375 0.50985 0.94156 1.36916 1.44807 1.51256 2.16297 2.28032 2.61524 2.97811 3.40323 3.56200 3.62076 3.78344 3.87341 4.00991 4.20410 4.27637 4.30239 4.37187 4.45867 4.49459 4.56871 4.67172 4.72826 4.77559 4.94534 4.97054 5.04856 5.10581 5.14396 5.15974 5.20142 5.26421 5.29932 5.33089 5.37602 5.47472 5.52177 5.58046 5.65953 5.77582 5.86096 5.95945 6.12602 6.50143 6.71530 6.80856 6.99814 8.19421 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011628 B = 0.005757 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2407.434715 B = 4862.515216 C = 6004.962526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.115 3.885 3 H 0.087 0.913 4 O -0.566 6.566 5 C -0.180 4.180 6 C 0.151 3.849 7 H 0.049 0.951 8 C -0.090 4.090 9 C -0.129 4.129 10 C 0.106 3.894 11 N -0.997 5.997 12 S 2.733 3.267 13 O -0.997 6.997 14 O -1.001 7.001 15 C -0.797 4.797 16 C -0.019 4.019 17 C -0.248 4.248 18 C -0.076 4.076 19 C -0.182 4.182 20 C 0.170 3.830 21 C -0.500 4.500 22 H 0.104 0.896 23 C 0.057 3.943 24 N -0.802 5.802 25 Si 0.952 3.048 26 H -0.256 1.256 27 H -0.247 1.247 28 H -0.263 1.263 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.386 0.614 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.103 0.897 38 H 0.052 0.948 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.122 0.878 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.108 0.892 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.689 -3.364 -9.630 12.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.055 3.945 3 H 0.105 0.895 4 O -0.373 6.373 5 C -0.219 4.219 6 C 0.046 3.954 7 H 0.067 0.933 8 C -0.129 4.129 9 C -0.168 4.168 10 C -0.019 4.019 11 N -0.835 5.835 12 S 2.831 3.169 13 O -0.987 6.987 14 O -0.992 6.992 15 C -0.890 4.890 16 C -0.038 4.038 17 C -0.268 4.268 18 C -0.095 4.095 19 C -0.202 4.202 20 C 0.166 3.834 21 C -0.528 4.528 22 H 0.121 0.879 23 C -0.162 4.162 24 N -0.426 5.426 25 Si 0.772 3.228 26 H -0.180 1.180 27 H -0.170 1.170 28 H -0.187 1.187 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.235 0.765 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.140 0.860 42 H 0.146 0.854 43 H 0.141 0.859 44 H 0.126 0.874 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.845 -3.096 -9.222 11.894 hybrid contribution 0.986 -0.117 0.620 1.171 sum -5.859 -3.212 -8.602 10.892 Atomic orbital electron populations 1.22448 0.95065 1.03299 1.02897 1.21662 0.93573 0.95966 0.83315 0.89469 1.86596 1.72774 1.33586 1.44354 1.23059 0.95001 1.02852 1.00973 1.21386 0.93694 0.96398 0.83954 0.93302 1.22571 0.95757 0.99590 0.94989 1.22804 0.98063 1.01740 0.94188 1.22329 0.93315 0.88061 0.98161 1.58313 1.61927 1.42626 1.20615 0.99974 0.72389 0.72951 0.71553 1.93370 1.38175 1.80395 1.86801 1.93419 1.85271 1.55053 1.65446 1.30392 1.10898 1.14686 1.33033 1.20591 0.98812 0.91578 0.92840 1.20911 0.93634 0.98822 1.13430 1.21253 0.95555 0.96439 0.96240 1.21467 0.99449 0.93702 1.05576 1.17331 0.89171 0.93971 0.82969 1.20467 1.02202 0.93712 1.36379 0.87866 1.26549 0.96029 1.02189 0.91450 1.69812 1.14048 1.34018 1.24694 0.85588 0.78975 0.77958 0.80299 1.17970 1.17049 1.18727 0.92002 0.90960 0.91231 0.76497 0.90097 0.90039 0.88298 0.90017 0.87909 0.92901 0.90707 0.91055 0.86017 0.85366 0.85855 0.87444 0.89405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 9.49 71.98 0.68 -2.51 16 2 C 0.11 2.50 3.58 30.59 0.11 2.61 16 3 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 4 O -0.57 -10.78 10.64 -148.98 -1.58 -12.37 16 5 C -0.18 -4.91 4.47 30.59 0.14 -4.77 16 6 C 0.15 4.83 3.18 45.34 0.14 4.98 16 7 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 8 C -0.09 -2.29 4.81 31.79 0.15 -2.14 16 9 C -0.13 -3.72 7.08 31.99 0.23 -3.49 16 10 C 0.11 3.70 6.71 86.86 0.58 4.28 16 11 N -1.00 -38.11 3.38 -484.28 -1.64 -39.75 16 12 S 2.73 124.04 5.30 -56.49 -0.30 123.74 16 13 O -1.00 -44.58 14.06 -128.00 -1.80 -46.38 16 14 O -1.00 -50.66 15.09 -128.00 -1.93 -52.59 16 15 C -0.80 -39.48 5.97 22.73 0.14 -39.34 16 16 C -0.02 -0.85 9.54 22.22 0.21 -0.64 16 17 C -0.25 -10.66 10.05 22.46 0.23 -10.44 16 18 C -0.08 -3.40 10.02 22.22 0.22 -3.18 16 19 C -0.18 -9.21 8.63 22.73 0.20 -9.02 16 20 C 0.17 8.92 5.48 -21.29 -0.12 8.80 16 21 C -0.50 -25.47 6.19 23.46 0.15 -25.32 16 22 H 0.10 5.44 4.71 -2.91 -0.01 5.42 16 23 C 0.06 2.64 5.03 85.26 0.43 3.07 16 24 N -0.80 -38.04 11.22 21.83 0.24 -37.80 16 25 Si 0.95 35.45 29.13 68.60 2.00 37.44 16 26 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 27 H -0.25 -8.31 7.11 99.48 0.71 -7.60 16 28 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 29 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.39 4.50 8.75 -74.06 -0.65 3.86 16 33 H 0.08 1.94 8.07 -2.39 -0.02 1.92 16 34 H 0.08 2.68 5.56 -2.39 -0.01 2.66 16 35 H 0.10 1.95 6.75 -2.39 -0.02 1.94 16 36 H 0.08 2.04 7.96 -2.39 -0.02 2.02 16 37 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.07 2.87 4.52 -2.39 -0.01 2.86 16 41 H 0.12 5.10 7.32 -2.91 -0.02 5.08 16 42 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 43 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 44 H 0.11 5.52 6.62 -2.92 -0.02 5.50 16 45 H 0.29 12.51 8.30 -92.70 -0.77 11.75 16 Total: -1.00 -63.54 360.18 -1.16 -64.70 By element: Atomic # 1 Polarization: 39.73 SS G_CDS: 0.37 Total: 40.10 kcal Atomic # 6 Polarization: -80.59 SS G_CDS: 3.49 Total: -77.10 kcal Atomic # 7 Polarization: -76.15 SS G_CDS: -1.39 Total: -77.54 kcal Atomic # 8 Polarization: -106.02 SS G_CDS: -5.32 Total: -111.34 kcal Atomic # 14 Polarization: 35.45 SS G_CDS: 2.00 Total: 37.44 kcal Atomic # 16 Polarization: 124.04 SS G_CDS: -0.30 Total: 123.74 kcal Total: -63.54 -1.16 -64.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601375971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.373 kcal (2) G-P(sol) polarization free energy of solvation -63.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds