Wall clock time and date at job start Tue Mar 31 2020 23:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.46910 * 2 1 4 4 O 1.42895 * 109.47408 * 120.00553 * 2 1 3 5 5 C 1.53002 * 109.46741 * 240.00977 * 2 1 3 6 6 C 1.53001 * 109.46756 * 173.93321 * 5 2 1 7 7 H 1.09007 * 110.00122 * 57.10945 * 6 5 2 8 8 C 1.54319 * 109.88462 * 296.01452 * 6 5 2 9 9 C 1.55153 * 102.94349 * 218.39270 * 8 6 5 10 10 C 1.54905 * 101.58593 * 35.49579 * 9 8 6 11 11 N 1.47021 * 109.88266 * 178.20460 * 6 5 2 12 12 S 1.65608 * 125.64770 * 298.32321 * 11 6 5 13 13 O 1.42099 * 106.40181 * 30.36202 * 12 11 6 14 14 O 1.42096 * 106.39935 * 163.28651 * 12 11 6 15 15 C 1.76196 * 107.21638 * 276.82382 * 12 11 6 16 16 C 1.37644 * 120.13007 * 114.66557 * 15 12 11 17 17 C 1.38607 * 120.25083 * 179.97438 * 16 15 12 18 18 C 1.38651 * 120.50186 * 0.02562 * 17 16 15 19 19 C 1.37600 * 120.25326 * 0.02592 * 18 17 16 20 20 C 1.40695 * 120.13090 * 294.39022 * 15 12 11 21 21 C 1.41399 * 120.24253 * 359.97438 * 20 15 12 22 22 H 1.07998 * 119.99696 * 327.67220 * 21 20 15 23 23 C 1.39941 * 120.00154 * 147.67327 * 21 20 15 24 24 N 1.30823 * 120.00183 * 348.12609 * 23 21 20 25 25 Si 1.86795 * 120.00231 * 168.13539 * 23 21 20 26 26 H 1.48502 * 109.47222 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47662 * 119.99455 * 25 23 21 28 28 H 1.48499 * 109.47389 * 239.99884 * 25 23 21 29 29 H 1.08997 * 109.47258 * 304.66123 * 1 2 3 30 30 H 1.08993 * 109.47271 * 64.66630 * 1 2 3 31 31 H 1.08999 * 109.46680 * 184.66474 * 1 2 3 32 32 H 0.96697 * 113.99639 * 304.04305 * 4 2 1 33 33 H 1.08993 * 109.47637 * 53.93826 * 5 2 1 34 34 H 1.08992 * 109.46952 * 293.92708 * 5 2 1 35 35 H 1.09002 * 110.72109 * 336.75348 * 8 6 5 36 36 H 1.08997 * 110.72265 * 100.02502 * 8 6 5 37 37 H 1.09000 * 111.00775 * 153.57575 * 9 8 6 38 38 H 1.09008 * 111.00327 * 277.42479 * 9 8 6 39 39 H 1.09000 * 110.37520 * 204.15299 * 10 9 8 40 40 H 1.09011 * 110.45683 * 81.87605 * 10 9 8 41 41 H 1.08002 * 119.86945 * 0.02562 * 16 15 12 42 42 H 1.07999 * 119.75090 * 180.02562 * 17 16 15 43 43 H 1.08002 * 119.87812 * 179.97438 * 18 17 16 44 44 H 1.07995 * 120.12919 * 179.97438 * 19 18 17 45 45 H 0.96995 * 120.00553 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0400 -0.7211 -1.2494 6 6 3.5623 -0.5904 -1.3280 7 1 4.0181 -0.9893 -0.4216 8 6 3.9535 0.8921 -1.5032 9 6 5.1474 0.8220 -2.4916 10 6 4.7260 -0.3557 -3.4054 11 7 4.0666 -1.3167 -2.5026 12 16 3.9192 -2.9448 -2.7672 13 8 2.7129 -3.3468 -2.1329 14 8 4.1770 -3.1516 -4.1491 15 6 5.2285 -3.7359 -1.8929 16 6 4.9476 -4.5728 -0.8369 17 6 5.9756 -5.1968 -0.1477 18 6 7.2966 -4.9860 -0.5122 19 6 7.6012 -4.1528 -1.5639 20 6 6.5651 -3.5192 -2.2752 21 6 6.8656 -2.6666 -3.3625 22 1 6.1828 -2.5936 -4.1961 23 6 8.0476 -1.9174 -3.3584 24 7 8.7574 -1.8215 -2.2637 25 14 8.6116 -1.0541 -4.9159 26 1 7.6401 -1.3178 -6.0076 27 1 8.6949 0.4078 -4.6692 28 1 9.9487 -1.5666 -5.3095 29 1 -0.3633 0.5844 0.8452 30 1 -0.3633 0.4397 -0.9288 31 1 -0.3633 -1.0243 0.0836 32 1 1.6713 -0.3077 1.9965 33 1 1.5908 -0.2736 -2.1360 34 1 1.7681 -1.7752 -1.1969 35 1 3.1291 1.4602 -1.9341 36 1 4.2651 1.3238 -0.5521 37 1 5.2372 1.7464 -3.0621 38 1 6.0761 0.5966 -1.9672 39 1 5.6025 -0.8096 -3.8679 40 1 4.0286 -0.0138 -4.1703 41 1 3.9221 -4.7444 -0.5447 42 1 5.7459 -5.8522 0.6794 43 1 8.0898 -5.4771 0.0321 44 1 8.6309 -3.9897 -1.8458 45 1 9.5765 -1.3020 -2.2607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601375972.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:33 Heat of formation + Delta-G solvation = -135.327927 kcal Electronic energy + Delta-G solvation = -29579.263573 eV Core-core repulsion = 25686.945648 eV Total energy + Delta-G solvation = -3892.317925 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.98628 -39.39923 -38.20237 -37.89782 -36.71092 -35.66325 -33.28268 -32.07105 -31.70639 -31.37733 -30.40188 -27.41398 -26.41616 -23.56645 -23.03399 -22.87702 -22.57489 -21.35377 -19.73108 -19.39193 -18.66371 -18.10171 -17.78985 -17.28309 -16.85502 -16.32348 -15.99713 -15.67557 -15.27695 -15.01816 -14.96112 -14.73419 -14.45909 -14.28576 -14.20745 -13.81591 -13.65235 -13.29563 -13.25918 -13.06997 -13.00142 -12.91832 -12.84511 -12.73082 -12.70381 -12.46606 -12.32465 -12.15488 -11.88412 -11.65687 -11.59252 -11.48897 -11.40751 -11.16416 -11.01585 -10.72498 -9.89781 -9.67805 -9.42189 -8.78779 -6.61765 -0.20747 0.51506 0.94418 1.37371 1.45598 1.52180 2.16827 2.28157 2.61476 2.97801 3.41623 3.50363 3.55997 3.75658 3.89386 4.02761 4.15623 4.25502 4.28191 4.39493 4.45881 4.49995 4.57285 4.66827 4.70428 4.79257 4.92445 4.97315 5.00181 5.02819 5.09501 5.11340 5.15850 5.26060 5.27175 5.32561 5.37137 5.51408 5.52264 5.54998 5.66701 5.77527 5.85811 5.96119 6.12246 6.49694 6.71054 6.81052 7.05608 8.19397 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011659 B = 0.005814 C = 0.004774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.914321 B = 4814.406220 C = 5864.249399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.107 3.893 3 H 0.081 0.919 4 O -0.589 6.589 5 C -0.150 4.150 6 C 0.153 3.847 7 H 0.049 0.951 8 C -0.109 4.109 9 C -0.123 4.123 10 C 0.103 3.897 11 N -0.998 5.998 12 S 2.731 3.269 13 O -0.999 6.999 14 O -1.001 7.001 15 C -0.798 4.798 16 C -0.018 4.018 17 C -0.250 4.250 18 C -0.076 4.076 19 C -0.182 4.182 20 C 0.169 3.831 21 C -0.497 4.497 22 H 0.103 0.897 23 C 0.056 3.944 24 N -0.801 5.801 25 Si 0.954 3.046 26 H -0.258 1.258 27 H -0.243 1.243 28 H -0.263 1.263 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.391 0.609 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.102 0.898 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.116 0.884 42 H 0.127 0.873 43 H 0.125 0.875 44 H 0.111 0.889 45 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.526 11.221 3.218 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.048 3.952 3 H 0.099 0.901 4 O -0.397 6.397 5 C -0.189 4.189 6 C 0.047 3.953 7 H 0.067 0.933 8 C -0.148 4.148 9 C -0.162 4.162 10 C -0.022 4.022 11 N -0.835 5.835 12 S 2.830 3.170 13 O -0.990 6.990 14 O -0.992 6.992 15 C -0.891 4.891 16 C -0.038 4.038 17 C -0.270 4.270 18 C -0.095 4.095 19 C -0.202 4.202 20 C 0.164 3.836 21 C -0.525 4.525 22 H 0.121 0.879 23 C -0.163 4.163 24 N -0.424 5.424 25 Si 0.773 3.227 26 H -0.181 1.181 27 H -0.167 1.167 28 H -0.187 1.187 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.240 0.760 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.120 0.880 36 H 0.107 0.893 37 H 0.126 0.874 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.134 0.866 42 H 0.145 0.855 43 H 0.143 0.857 44 H 0.129 0.871 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.683 10.492 2.329 13.211 hybrid contribution 0.932 -0.160 0.425 1.037 sum -6.751 10.332 2.754 12.645 Atomic orbital electron populations 1.22493 0.95214 1.02375 1.03864 1.21806 0.93528 0.95431 0.84474 0.90141 1.86610 1.74265 1.61707 1.17116 1.22446 0.94977 1.03220 0.98228 1.21352 0.93446 0.93955 0.86510 0.93262 1.22694 0.98583 0.92933 1.00557 1.22730 0.98108 0.97911 0.97441 1.22397 0.97231 0.89852 0.92684 1.58298 1.71349 1.22693 1.31209 0.99987 0.72781 0.71626 0.72592 1.93388 1.45288 1.82308 1.78023 1.93417 1.86679 1.85210 1.33862 1.30357 1.14145 1.25452 1.19151 1.20551 0.98745 0.92646 0.91866 1.20886 0.92757 1.08360 1.04953 1.21248 0.96460 0.96101 0.95646 1.21491 0.99124 0.99915 0.99683 1.17341 0.89333 0.86947 0.89933 1.20462 1.06470 1.21034 1.04518 0.87916 1.26576 0.94263 0.95641 0.99807 1.69817 1.13083 1.30930 1.28601 0.85565 0.79290 0.79570 0.78261 1.18098 1.16677 1.18711 0.90122 0.90565 0.93417 0.76017 0.89002 0.91230 0.87969 0.89297 0.87390 0.92645 0.90969 0.90441 0.86607 0.85520 0.85743 0.87109 0.89324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.26 9.50 71.98 0.68 -2.58 16 2 C 0.11 2.40 3.49 30.60 0.11 2.50 16 3 H 0.08 1.39 7.15 -2.39 -0.02 1.38 16 4 O -0.59 -15.25 12.89 -148.98 -1.92 -17.17 16 5 C -0.15 -4.52 4.29 30.60 0.13 -4.39 16 6 C 0.15 5.14 3.12 45.34 0.14 5.28 16 7 H 0.05 1.92 7.81 -2.38 -0.02 1.90 16 8 C -0.11 -2.66 5.37 31.78 0.17 -2.48 16 9 C -0.12 -3.44 7.08 31.98 0.23 -3.21 16 10 C 0.10 3.60 6.67 86.85 0.58 4.18 16 11 N -1.00 -39.58 3.35 -484.27 -1.62 -41.20 16 12 S 2.73 129.82 5.28 -56.49 -0.30 129.52 16 13 O -1.00 -48.10 14.08 -128.00 -1.80 -49.90 16 14 O -1.00 -52.00 15.15 -128.00 -1.94 -53.94 16 15 C -0.80 -41.16 5.97 22.73 0.14 -41.03 16 16 C -0.02 -0.89 9.53 22.22 0.21 -0.68 16 17 C -0.25 -11.25 10.05 22.46 0.23 -11.02 16 18 C -0.08 -3.49 10.02 22.22 0.22 -3.26 16 19 C -0.18 -9.40 8.64 22.73 0.20 -9.21 16 20 C 0.17 9.06 5.50 -21.29 -0.12 8.94 16 21 C -0.50 -25.61 6.21 23.46 0.15 -25.46 16 22 H 0.10 5.45 4.55 -2.91 -0.01 5.44 16 23 C 0.06 2.62 5.08 85.26 0.43 3.06 16 24 N -0.80 -38.03 11.14 21.83 0.24 -37.78 16 25 Si 0.95 35.27 29.13 68.60 2.00 37.27 16 26 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 27 H -0.24 -8.04 7.11 99.48 0.71 -7.33 16 28 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.39 6.02 9.04 -74.06 -0.67 5.35 16 33 H 0.09 2.39 8.10 -2.39 -0.02 2.37 16 34 H 0.07 2.64 5.62 -2.39 -0.01 2.63 16 35 H 0.10 1.86 7.77 -2.39 -0.02 1.84 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.07 2.91 4.48 -2.39 -0.01 2.89 16 40 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 41 H 0.12 5.30 7.32 -2.91 -0.02 5.27 16 42 H 0.13 4.80 8.06 -2.91 -0.02 4.77 16 43 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 44 H 0.11 5.75 6.53 -2.91 -0.02 5.74 16 45 H 0.30 12.49 8.30 -92.71 -0.77 11.73 16 Total: -1.00 -68.69 362.64 -1.50 -70.19 By element: Atomic # 1 Polarization: 42.04 SS G_CDS: 0.35 Total: 42.39 kcal Atomic # 6 Polarization: -82.86 SS G_CDS: 3.49 Total: -79.37 kcal Atomic # 7 Polarization: -77.61 SS G_CDS: -1.38 Total: -78.99 kcal Atomic # 8 Polarization: -115.36 SS G_CDS: -5.66 Total: -121.02 kcal Atomic # 14 Polarization: 35.27 SS G_CDS: 2.00 Total: 37.27 kcal Atomic # 16 Polarization: 129.82 SS G_CDS: -0.30 Total: 129.52 kcal Total: -68.69 -1.50 -70.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601375972.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.136 kcal (2) G-P(sol) polarization free energy of solvation -68.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds