Wall clock time and date at job start Tue Mar 31 2020 23:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47231 * 2 1 4 4 O 1.42896 * 109.47478 * 119.99902 * 2 1 3 5 5 C 1.53000 * 109.47474 * 240.00355 * 2 1 3 6 6 C 1.52991 * 109.47436 * 173.96731 * 5 2 1 7 7 H 1.09005 * 109.87826 * 307.31197 * 6 5 2 8 8 C 1.54321 * 110.01515 * 68.41197 * 6 5 2 9 9 C 1.55156 * 102.94691 * 141.68385 * 8 6 5 10 10 C 1.55125 * 101.48330 * 324.33423 * 9 8 6 11 11 N 1.47024 * 109.88428 * 186.29704 * 6 5 2 12 12 S 1.65599 * 125.64788 * 61.44806 * 11 6 5 13 13 O 1.42099 * 106.40261 * 162.67109 * 12 11 6 14 14 O 1.42105 * 106.40172 * 29.75315 * 12 11 6 15 15 C 1.76201 * 107.21879 * 276.21521 * 12 11 6 16 16 C 1.37639 * 120.12941 * 115.02272 * 15 12 11 17 17 C 1.38606 * 120.24880 * 180.02562 * 16 15 12 18 18 C 1.38661 * 120.50313 * 0.02562 * 17 16 15 19 19 C 1.37596 * 120.24691 * 0.02562 * 18 17 16 20 20 C 1.40698 * 120.12610 * 295.04649 * 15 12 11 21 21 C 1.41396 * 120.24296 * 359.97438 * 20 15 12 22 22 H 1.08000 * 120.00057 * 329.19898 * 21 20 15 23 23 C 1.39948 * 119.99686 * 149.19607 * 21 20 15 24 24 N 1.30816 * 120.00132 * 346.71190 * 23 21 20 25 25 Si 1.86798 * 119.99719 * 166.70944 * 23 21 20 26 26 H 1.48501 * 109.47353 * 95.07446 * 25 23 21 27 27 H 1.48504 * 109.47301 * 215.07639 * 25 23 21 28 28 H 1.48502 * 109.47336 * 335.07334 * 25 23 21 29 29 H 1.08999 * 109.46444 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46917 * 299.99749 * 1 2 3 31 31 H 1.08998 * 109.47355 * 59.99991 * 1 2 3 32 32 H 0.96700 * 114.00114 * 62.21405 * 4 2 1 33 33 H 1.08995 * 109.46934 * 53.96347 * 5 2 1 34 34 H 1.09002 * 109.47009 * 293.96730 * 5 2 1 35 35 H 1.09011 * 110.72085 * 260.04894 * 8 6 5 36 36 H 1.09002 * 110.72199 * 23.13774 * 8 6 5 37 37 H 1.09002 * 111.00465 * 82.57333 * 9 8 6 38 38 H 1.09001 * 111.00471 * 206.38718 * 9 8 6 39 39 H 1.08999 * 110.49642 * 278.45336 * 10 9 8 40 40 H 1.09001 * 110.34589 * 156.06254 * 10 9 8 41 41 H 1.08000 * 119.87162 * 0.04063 * 16 15 12 42 42 H 1.08007 * 119.75024 * 180.27827 * 17 16 15 43 43 H 1.07996 * 119.87623 * 179.97438 * 18 17 16 44 44 H 1.07997 * 120.13227 * 180.02562 * 19 18 17 45 45 H 0.96999 * 119.99870 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0401 -0.7212 -1.2493 6 6 3.5625 -0.5912 -1.3273 7 1 3.8494 0.4575 -1.2494 8 6 4.2207 -1.4012 -0.1906 9 6 5.4768 -2.0026 -0.8746 10 6 4.9460 -2.2806 -2.3055 11 7 4.0474 -1.1491 -2.5982 12 16 3.6453 -0.6017 -4.1085 13 8 4.6184 -1.1300 -4.9991 14 8 3.3873 0.7894 -3.9756 15 6 2.1120 -1.3526 -4.5443 16 6 0.9874 -0.5778 -4.7157 17 6 -0.2201 -1.1660 -5.0580 18 6 -0.3103 -2.5388 -5.2312 19 6 0.8009 -3.3329 -5.0641 20 6 2.0326 -2.7465 -4.7181 21 6 3.1814 -3.5524 -4.5447 22 1 4.1595 -3.1541 -4.7704 23 6 3.0508 -4.8663 -4.0807 24 7 1.9183 -5.2678 -3.5635 25 14 4.4938 -6.0465 -4.1999 26 1 5.2414 -6.0456 -2.9169 27 1 3.9915 -7.4159 -4.4791 28 1 5.3956 -5.6166 -5.2986 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7493 -1.6045 1.2160 33 1 1.5912 -0.2735 -2.1359 34 1 1.7676 -1.7753 -1.1970 35 1 4.5062 -0.7474 0.6336 36 1 3.5533 -2.1894 0.1578 37 1 6.2952 -1.2828 -0.8909 38 1 5.7826 -2.9277 -0.3860 39 1 4.3939 -3.2200 -2.3320 40 1 5.7708 -2.3041 -3.0178 41 1 1.0461 0.4924 -4.5831 42 1 -1.0966 -0.5499 -5.1949 43 1 -1.2563 -2.9864 -5.4975 44 1 0.7287 -4.4019 -5.1998 45 1 1.8280 -6.1784 -3.2416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601375973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:38 Heat of formation + Delta-G solvation = -118.579224 kcal Electronic energy + Delta-G solvation = -29997.152141 eV Core-core repulsion = 26105.560494 eV Total energy + Delta-G solvation = -3891.591647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -38.88229 -37.62789 -36.82717 -36.30699 -34.89170 -33.93482 -31.97492 -30.46732 -30.14151 -29.63513 -29.37351 -25.60672 -25.20583 -21.89481 -21.66601 -21.26586 -21.15853 -20.53774 -18.03164 -17.70898 -17.07310 -16.39388 -15.95935 -15.46558 -15.38618 -15.30053 -14.65196 -14.37244 -13.89282 -13.49409 -13.36429 -13.28444 -13.14707 -12.81462 -12.76748 -12.34293 -12.11881 -11.94853 -11.82426 -11.63126 -11.55211 -11.28883 -11.26247 -11.17701 -11.16330 -11.00416 -10.71108 -10.62274 -10.56112 -10.47040 -10.34298 -10.27022 -9.91321 -9.76066 -9.47352 -9.24854 -8.27695 -8.02133 -7.63208 -7.10577 -4.80816 1.47538 2.30468 2.66763 2.92989 2.99658 3.05668 3.73112 3.87763 4.33680 4.50646 4.73525 4.89894 4.96555 4.98214 5.22660 5.29618 5.38257 5.40087 5.52467 5.69298 5.74012 5.81439 5.91623 5.98920 6.03011 6.10327 6.18358 6.20745 6.27621 6.28650 6.34280 6.38476 6.42495 6.62015 6.66499 6.73815 6.85298 6.89649 7.00249 7.17961 7.30129 7.47082 7.64698 7.76007 7.76941 7.90857 8.31794 8.48288 8.61108 9.83897 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.006776 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.361717 B = 4131.019375 C = 4823.158305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.108 3.892 3 H 0.097 0.903 4 O -0.563 6.563 5 C -0.173 4.173 6 C 0.162 3.838 7 H 0.071 0.929 8 C -0.107 4.107 9 C -0.137 4.137 10 C 0.121 3.879 11 N -1.000 6.000 12 S 2.717 3.283 13 O -0.973 6.973 14 O -0.995 6.995 15 C -0.773 4.773 16 C -0.004 4.004 17 C -0.247 4.247 18 C -0.077 4.077 19 C -0.155 4.155 20 C 0.196 3.804 21 C -0.474 4.474 22 H 0.113 0.887 23 C 0.084 3.916 24 N -0.778 5.778 25 Si 0.900 3.100 26 H -0.262 1.262 27 H -0.273 1.273 28 H -0.252 1.252 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.372 0.628 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.106 0.894 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.119 0.881 45 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.735 1.788 7.962 8.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.049 3.951 3 H 0.115 0.885 4 O -0.369 6.369 5 C -0.212 4.212 6 C 0.056 3.944 7 H 0.089 0.911 8 C -0.146 4.146 9 C -0.176 4.176 10 C -0.004 4.004 11 N -0.835 5.835 12 S 2.817 3.183 13 O -0.964 6.964 14 O -0.986 6.986 15 C -0.868 4.868 16 C -0.024 4.024 17 C -0.267 4.267 18 C -0.096 4.096 19 C -0.175 4.175 20 C 0.191 3.809 21 C -0.502 4.502 22 H 0.130 0.870 23 C -0.138 4.138 24 N -0.401 5.401 25 Si 0.723 3.277 26 H -0.186 1.186 27 H -0.198 1.198 28 H -0.175 1.175 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.220 0.780 33 H 0.097 0.903 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.124 0.876 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.137 0.863 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.405 2.804 7.611 8.232 hybrid contribution -0.716 -1.718 -0.243 1.877 sum 0.689 1.086 7.368 7.479 Atomic orbital electron populations 1.22469 0.96620 1.02649 1.02364 1.21817 0.92660 0.96504 0.84152 0.88495 1.86549 1.78765 1.27814 1.43778 1.22860 0.96348 1.02728 0.99235 1.21128 0.92599 0.97257 0.83445 0.91123 1.22601 0.96223 0.99351 0.96426 1.22890 0.97793 1.00911 0.95997 1.22141 0.92640 0.90027 0.95602 1.58555 1.59639 1.44839 1.20506 1.00548 0.74446 0.72110 0.71198 1.93467 1.60576 1.80421 1.61957 1.93436 1.87060 1.31691 1.86381 1.29907 1.18657 1.05364 1.32848 1.20212 0.91865 0.97239 0.93047 1.20473 0.96734 0.94727 1.14755 1.20884 0.97182 0.93872 0.97642 1.21428 0.93040 0.99363 1.03680 1.16978 0.92997 0.88426 0.82507 1.20430 0.96075 0.96647 1.37067 0.86978 1.25948 0.97220 0.98527 0.92059 1.69796 1.25541 1.18968 1.25789 0.86381 0.81567 0.79046 0.80687 1.18637 1.19762 1.17483 0.92261 0.92271 0.91444 0.78046 0.90290 0.90087 0.90464 0.90832 0.91335 0.90723 0.90147 0.90897 0.87610 0.88798 0.88926 0.86338 0.90303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.22 9.55 37.16 0.35 -1.86 16 2 C 0.11 1.40 3.57 -26.73 -0.10 1.31 16 3 H 0.10 1.25 8.14 -51.92 -0.42 0.82 16 4 O -0.56 -6.81 11.05 -35.23 -0.39 -7.20 16 5 C -0.17 -2.73 4.42 -26.74 -0.12 -2.84 16 6 C 0.16 2.61 2.93 -66.96 -0.20 2.41 16 7 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 8 C -0.11 -1.43 4.88 -24.90 -0.12 -1.55 16 9 C -0.14 -1.85 7.10 -24.47 -0.17 -2.02 16 10 C 0.12 2.11 5.78 -2.41 -0.01 2.09 16 11 N -1.00 -18.90 3.33 -104.30 -0.35 -19.25 16 12 S 2.72 60.67 4.75 -107.50 -0.51 60.16 16 13 O -0.97 -23.97 14.95 -57.17 -0.85 -24.82 16 14 O -0.99 -22.94 16.64 -57.17 -0.95 -23.89 16 15 C -0.77 -18.07 5.20 -38.87 -0.20 -18.28 16 16 C 0.00 -0.08 8.70 -39.66 -0.35 -0.43 16 17 C -0.25 -5.23 10.05 -39.29 -0.39 -5.63 16 18 C -0.08 -1.68 10.02 -39.66 -0.40 -2.07 16 19 C -0.16 -3.72 8.65 -38.87 -0.34 -4.06 16 20 C 0.20 4.81 5.51 -106.82 -0.59 4.22 16 21 C -0.47 -11.41 6.26 -37.74 -0.24 -11.65 16 22 H 0.11 2.77 5.03 -52.49 -0.26 2.50 16 23 C 0.08 1.87 4.83 -17.34 -0.08 1.78 16 24 N -0.78 -17.56 11.12 55.55 0.62 -16.94 16 25 Si 0.90 17.06 29.58 -169.99 -5.03 12.03 16 26 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 27 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 28 H -0.25 -4.92 7.11 56.52 0.40 -4.52 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.37 3.63 8.56 45.56 0.39 4.02 16 33 H 0.08 1.41 6.20 -51.93 -0.32 1.09 16 34 H 0.08 1.36 8.00 -51.93 -0.42 0.95 16 35 H 0.08 0.94 7.99 -51.92 -0.42 0.53 16 36 H 0.07 0.94 6.79 -51.93 -0.35 0.59 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.08 1.50 6.61 -51.93 -0.34 1.15 16 40 H 0.07 1.27 7.78 -51.93 -0.40 0.87 16 41 H 0.11 2.19 7.32 -52.49 -0.38 1.80 16 42 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 43 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 44 H 0.12 2.87 6.48 -52.49 -0.34 2.53 16 45 H 0.29 5.87 8.30 -40.82 -0.34 5.53 16 LS Contribution 362.34 15.07 5.46 5.46 Total: -1.00 -28.18 362.34 -10.74 -38.92 By element: Atomic # 1 Polarization: 19.90 SS G_CDS: -5.79 Total: 14.11 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: -2.95 Total: -38.57 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.27 Total: -36.19 kcal Atomic # 8 Polarization: -53.72 SS G_CDS: -2.20 Total: -55.92 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Atomic # 16 Polarization: 60.67 SS G_CDS: -0.51 Total: 60.16 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.18 -10.74 -38.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601375973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.656 kcal (2) G-P(sol) polarization free energy of solvation -28.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds