Wall clock time and date at job start Tue Mar 31 2020 23:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.47231 * 2 1 4 4 O 1.42896 * 109.47478 * 119.99902 * 2 1 3 5 5 C 1.53000 * 109.47474 * 240.00355 * 2 1 3 6 6 C 1.52991 * 109.47436 * 173.96731 * 5 2 1 7 7 H 1.09005 * 109.87826 * 307.31197 * 6 5 2 8 8 C 1.54321 * 110.01515 * 68.41197 * 6 5 2 9 9 C 1.55156 * 102.94691 * 141.68385 * 8 6 5 10 10 C 1.55125 * 101.48330 * 324.33423 * 9 8 6 11 11 N 1.47024 * 109.88428 * 186.29704 * 6 5 2 12 12 S 1.65599 * 125.64788 * 61.44806 * 11 6 5 13 13 O 1.42099 * 106.40261 * 162.67109 * 12 11 6 14 14 O 1.42105 * 106.40172 * 29.75315 * 12 11 6 15 15 C 1.76201 * 107.21879 * 276.21521 * 12 11 6 16 16 C 1.37639 * 120.12941 * 115.02272 * 15 12 11 17 17 C 1.38606 * 120.24880 * 180.02562 * 16 15 12 18 18 C 1.38661 * 120.50313 * 0.02562 * 17 16 15 19 19 C 1.37596 * 120.24691 * 0.02562 * 18 17 16 20 20 C 1.40698 * 120.12610 * 295.04649 * 15 12 11 21 21 C 1.41396 * 120.24296 * 359.97438 * 20 15 12 22 22 H 1.08000 * 120.00057 * 329.19898 * 21 20 15 23 23 C 1.39948 * 119.99686 * 149.19607 * 21 20 15 24 24 N 1.30816 * 120.00132 * 346.71190 * 23 21 20 25 25 Si 1.86798 * 119.99719 * 166.70944 * 23 21 20 26 26 H 1.48501 * 109.47353 * 95.07446 * 25 23 21 27 27 H 1.48504 * 109.47301 * 215.07639 * 25 23 21 28 28 H 1.48502 * 109.47336 * 335.07334 * 25 23 21 29 29 H 1.08999 * 109.46444 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46917 * 299.99749 * 1 2 3 31 31 H 1.08998 * 109.47355 * 59.99991 * 1 2 3 32 32 H 0.96700 * 114.00114 * 62.21405 * 4 2 1 33 33 H 1.08995 * 109.46934 * 53.96347 * 5 2 1 34 34 H 1.09002 * 109.47009 * 293.96730 * 5 2 1 35 35 H 1.09011 * 110.72085 * 260.04894 * 8 6 5 36 36 H 1.09002 * 110.72199 * 23.13774 * 8 6 5 37 37 H 1.09002 * 111.00465 * 82.57333 * 9 8 6 38 38 H 1.09001 * 111.00471 * 206.38718 * 9 8 6 39 39 H 1.08999 * 110.49642 * 278.45336 * 10 9 8 40 40 H 1.09001 * 110.34589 * 156.06254 * 10 9 8 41 41 H 1.08000 * 119.87162 * 0.04063 * 16 15 12 42 42 H 1.08007 * 119.75024 * 180.27827 * 17 16 15 43 43 H 1.07996 * 119.87623 * 179.97438 * 18 17 16 44 44 H 1.07997 * 120.13227 * 180.02562 * 19 18 17 45 45 H 0.96999 * 119.99870 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1667 5 6 2.0401 -0.7212 -1.2493 6 6 3.5625 -0.5912 -1.3273 7 1 3.8494 0.4575 -1.2494 8 6 4.2207 -1.4012 -0.1906 9 6 5.4768 -2.0026 -0.8746 10 6 4.9460 -2.2806 -2.3055 11 7 4.0474 -1.1491 -2.5982 12 16 3.6453 -0.6017 -4.1085 13 8 4.6184 -1.1300 -4.9991 14 8 3.3873 0.7894 -3.9756 15 6 2.1120 -1.3526 -4.5443 16 6 0.9874 -0.5778 -4.7157 17 6 -0.2201 -1.1660 -5.0580 18 6 -0.3103 -2.5388 -5.2312 19 6 0.8009 -3.3329 -5.0641 20 6 2.0326 -2.7465 -4.7181 21 6 3.1814 -3.5524 -4.5447 22 1 4.1595 -3.1541 -4.7704 23 6 3.0508 -4.8663 -4.0807 24 7 1.9183 -5.2678 -3.5635 25 14 4.4938 -6.0465 -4.1999 26 1 5.2414 -6.0456 -2.9169 27 1 3.9915 -7.4159 -4.4791 28 1 5.3956 -5.6166 -5.2986 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7493 -1.6045 1.2160 33 1 1.5912 -0.2735 -2.1359 34 1 1.7676 -1.7753 -1.1970 35 1 4.5062 -0.7474 0.6336 36 1 3.5533 -2.1894 0.1578 37 1 6.2952 -1.2828 -0.8909 38 1 5.7826 -2.9277 -0.3860 39 1 4.3939 -3.2200 -2.3320 40 1 5.7708 -2.3041 -3.0178 41 1 1.0461 0.4924 -4.5831 42 1 -1.0966 -0.5499 -5.1949 43 1 -1.2563 -2.9864 -5.4975 44 1 0.7287 -4.4019 -5.1998 45 1 1.8280 -6.1784 -3.2416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601375973.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:37 Heat of formation + Delta-G solvation = -136.844356 kcal Electronic energy + Delta-G solvation = -29997.944177 eV Core-core repulsion = 26105.560494 eV Total energy + Delta-G solvation = -3892.383682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.10706 -39.36808 -38.19870 -37.86953 -36.73626 -35.66292 -33.08902 -32.07436 -31.60569 -31.36066 -30.53197 -27.33771 -26.43930 -23.53336 -23.03353 -22.85678 -22.46028 -21.77669 -19.68431 -19.43960 -18.68368 -17.80371 -17.36712 -17.11902 -16.80418 -16.43213 -16.18590 -16.00557 -15.22933 -15.02439 -14.92607 -14.66821 -14.47523 -14.44110 -14.18578 -13.74181 -13.53406 -13.31302 -13.18677 -13.05750 -12.99983 -12.93322 -12.90987 -12.81079 -12.67764 -12.53542 -12.28193 -12.17889 -11.86931 -11.65878 -11.63483 -11.49448 -11.47133 -11.13952 -11.03679 -10.79961 -9.85679 -9.66462 -9.41469 -8.79985 -6.60139 -0.23188 0.53722 0.96702 1.37469 1.45195 1.51178 2.16228 2.27385 2.61778 2.98204 3.42943 3.51803 3.56824 3.75045 3.83840 3.98201 4.18244 4.26513 4.29881 4.34982 4.48300 4.49600 4.55014 4.64494 4.69995 4.81801 4.91436 4.96887 4.98714 5.07482 5.15261 5.16292 5.19126 5.22826 5.27573 5.30009 5.31796 5.42593 5.53488 5.57709 5.67982 5.76772 5.87212 5.99413 6.14183 6.51878 6.71944 6.83023 6.89452 8.17067 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009491 B = 0.006776 C = 0.005804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.361717 B = 4131.019375 C = 4823.158305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.118 3.882 3 H 0.101 0.899 4 O -0.562 6.562 5 C -0.167 4.167 6 C 0.151 3.849 7 H 0.072 0.928 8 C -0.097 4.097 9 C -0.126 4.126 10 C 0.111 3.889 11 N -0.999 5.999 12 S 2.726 3.274 13 O -1.004 7.004 14 O -1.008 7.008 15 C -0.786 4.786 16 C -0.014 4.014 17 C -0.246 4.246 18 C -0.075 4.075 19 C -0.181 4.181 20 C 0.172 3.828 21 C -0.494 4.494 22 H 0.099 0.901 23 C 0.059 3.941 24 N -0.795 5.795 25 Si 0.950 3.050 26 H -0.241 1.241 27 H -0.262 1.262 28 H -0.266 1.266 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.384 0.616 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.109 0.891 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.725 1.518 9.989 10.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.059 3.941 3 H 0.119 0.881 4 O -0.369 6.369 5 C -0.206 4.206 6 C 0.046 3.954 7 H 0.090 0.910 8 C -0.135 4.135 9 C -0.165 4.165 10 C -0.014 4.014 11 N -0.837 5.837 12 S 2.826 3.174 13 O -0.995 6.995 14 O -0.999 6.999 15 C -0.881 4.881 16 C -0.034 4.034 17 C -0.266 4.266 18 C -0.094 4.094 19 C -0.201 4.201 20 C 0.168 3.832 21 C -0.522 4.522 22 H 0.116 0.884 23 C -0.161 4.161 24 N -0.419 5.419 25 Si 0.771 3.229 26 H -0.164 1.164 27 H -0.186 1.186 28 H -0.190 1.190 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.233 0.767 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.134 0.866 42 H 0.143 0.857 43 H 0.139 0.861 44 H 0.127 0.873 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.370 2.534 9.644 10.065 hybrid contribution -0.774 -1.601 -0.872 1.980 sum 0.596 0.933 8.772 8.842 Atomic orbital electron populations 1.22436 0.95923 1.02648 1.02779 1.21670 0.93106 0.96288 0.83063 0.88111 1.86527 1.78776 1.28804 1.42842 1.22797 0.96168 1.01853 0.99776 1.21453 0.93037 0.97823 0.83127 0.90951 1.22588 0.95896 0.99400 0.95662 1.22902 0.98049 1.02484 0.93047 1.22289 0.91990 0.88939 0.98153 1.58333 1.59807 1.45328 1.20228 1.00025 0.73862 0.71731 0.71766 1.93418 1.61440 1.80826 1.63797 1.93403 1.87145 1.32435 1.86884 1.30104 1.19479 1.05257 1.33249 1.20470 0.92131 0.97793 0.92988 1.20833 0.97443 0.94904 1.13460 1.21207 0.97682 0.94136 0.96334 1.21456 0.93881 0.99228 1.05557 1.17247 0.93643 0.89131 0.83216 1.20418 0.95362 0.97905 1.38469 0.88365 1.26495 0.99339 0.99020 0.91236 1.69802 1.26693 1.19769 1.25591 0.85640 0.78847 0.77443 0.81016 1.16412 1.18647 1.19029 0.92488 0.90673 0.92177 0.76740 0.92790 0.91616 0.88373 0.90201 0.89970 0.88315 0.91702 0.91744 0.86624 0.85678 0.86110 0.87347 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.10 9.55 71.98 0.69 -3.41 16 2 C 0.12 2.89 3.57 30.59 0.11 3.00 16 3 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 4 O -0.56 -12.15 11.05 -148.98 -1.65 -13.80 16 5 C -0.17 -5.21 4.42 30.59 0.14 -5.08 16 6 C 0.15 4.74 2.93 45.34 0.13 4.87 16 7 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 8 C -0.10 -2.34 4.88 31.78 0.15 -2.18 16 9 C -0.13 -3.09 7.10 32.06 0.23 -2.87 16 10 C 0.11 3.84 5.78 86.93 0.50 4.34 16 11 N -1.00 -38.07 3.33 -483.88 -1.61 -39.68 16 12 S 2.73 125.14 4.75 -56.49 -0.27 124.87 16 13 O -1.00 -51.38 14.95 -128.00 -1.91 -53.29 16 14 O -1.01 -47.35 16.64 -128.00 -2.13 -49.48 16 15 C -0.79 -37.74 5.20 22.73 0.12 -37.62 16 16 C -0.01 -0.62 8.70 22.22 0.19 -0.43 16 17 C -0.25 -10.22 10.05 22.46 0.23 -9.99 16 18 C -0.07 -3.22 10.02 22.22 0.22 -3.00 16 19 C -0.18 -8.85 8.65 22.73 0.20 -8.65 16 20 C 0.17 8.71 5.51 -21.29 -0.12 8.60 16 21 C -0.49 -24.50 6.26 23.46 0.15 -24.35 16 22 H 0.10 5.07 5.03 -2.91 -0.01 5.05 16 23 C 0.06 2.65 4.83 85.26 0.41 3.06 16 24 N -0.80 -36.09 11.12 21.83 0.24 -35.85 16 25 Si 0.95 34.67 29.58 68.60 2.03 36.70 16 26 H -0.24 -7.92 7.11 99.48 0.71 -7.21 16 27 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 28 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.38 6.51 8.56 -74.06 -0.63 5.88 16 33 H 0.05 1.95 6.20 -2.39 -0.01 1.94 16 34 H 0.07 2.22 8.00 -2.39 -0.02 2.20 16 35 H 0.10 2.02 7.99 -2.38 -0.02 2.01 16 36 H 0.08 1.84 6.79 -2.39 -0.02 1.83 16 37 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 39 H 0.06 2.43 6.61 -2.39 -0.02 2.42 16 40 H 0.06 2.29 7.78 -2.39 -0.02 2.27 16 41 H 0.12 4.81 7.32 -2.91 -0.02 4.79 16 42 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 43 H 0.12 4.40 8.06 -2.91 -0.02 4.38 16 44 H 0.11 5.39 6.48 -2.91 -0.02 5.37 16 45 H 0.30 12.01 8.30 -92.71 -0.77 11.24 16 Total: -1.00 -61.55 362.34 -1.57 -63.12 By element: Atomic # 1 Polarization: 40.74 SS G_CDS: 0.38 Total: 41.11 kcal Atomic # 6 Polarization: -77.05 SS G_CDS: 3.35 Total: -73.71 kcal Atomic # 7 Polarization: -74.16 SS G_CDS: -1.37 Total: -75.53 kcal Atomic # 8 Polarization: -110.87 SS G_CDS: -5.69 Total: -116.56 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 2.03 Total: 36.70 kcal Atomic # 16 Polarization: 125.14 SS G_CDS: -0.27 Total: 124.87 kcal Total: -61.55 -1.57 -63.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601375973.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.723 kcal (2) G-P(sol) polarization free energy of solvation -61.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds