Wall clock time and date at job start Tue Mar 31 2020 22:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47156 * 2 1 4 4 H 1.09004 * 109.47094 * 54.47744 * 3 2 1 5 5 N 1.46500 * 109.47177 * 294.47568 * 3 2 1 6 6 S 1.65601 * 119.99868 * 110.97093 * 5 3 2 7 7 O 1.42104 * 106.40105 * 312.71307 * 6 5 3 8 8 O 1.42097 * 106.40217 * 179.79220 * 6 5 3 9 9 C 1.76202 * 107.21807 * 66.25031 * 6 5 3 10 10 C 1.37632 * 120.12833 * 248.36313 * 9 6 5 11 11 C 1.38616 * 120.24506 * 180.02562 * 10 9 6 12 12 C 1.38657 * 120.50509 * 0.04667 * 11 10 9 13 13 C 1.37594 * 120.24347 * 359.66715 * 12 11 10 14 14 C 1.40699 * 120.12443 * 68.38816 * 9 6 5 15 15 C 1.41396 * 120.24394 * 359.97438 * 14 9 6 16 16 H 1.07997 * 120.00155 * 331.10968 * 15 14 9 17 17 C 1.39950 * 119.99626 * 151.11597 * 15 14 9 18 18 N 1.30816 * 120.00096 * 348.50529 * 17 15 14 19 19 Si 1.86801 * 119.99524 * 168.50113 * 17 15 14 20 20 H 1.48504 * 109.47073 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47399 * 299.99897 * 19 17 15 22 22 H 1.48500 * 109.47141 * 60.00388 * 19 17 15 23 23 C 1.53002 * 109.47179 * 174.47954 * 3 2 1 24 24 H 1.09003 * 110.32944 * 302.25098 * 23 3 2 25 25 C 1.54480 * 110.37087 * 180.02562 * 23 3 2 26 26 C 1.54513 * 104.05800 * 217.18864 * 25 23 3 27 27 C 1.54479 * 104.06333 * 359.97438 * 26 25 23 28 28 O 1.44418 * 110.37402 * 64.61864 * 23 3 2 29 29 H 1.09005 * 109.46947 * 305.35253 * 1 2 3 30 30 H 1.09001 * 109.47638 * 65.35928 * 1 2 3 31 31 H 1.09006 * 109.47260 * 185.35917 * 1 2 3 32 32 H 1.09008 * 109.47184 * 240.00306 * 2 1 3 33 33 H 1.08999 * 109.47251 * 120.00234 * 2 1 3 34 34 H 0.97000 * 120.00242 * 290.97691 * 5 3 2 35 35 H 1.07998 * 119.88150 * 0.02562 * 10 9 6 36 36 H 1.08007 * 119.74445 * 180.02562 * 11 10 9 37 37 H 1.07997 * 119.87689 * 179.97438 * 12 11 10 38 38 H 1.08004 * 120.12633 * 180.30215 * 13 12 11 39 39 H 0.97002 * 119.99623 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.51042 * 335.82736 * 25 23 3 41 41 H 1.08995 * 110.51183 * 98.40752 * 25 23 3 42 42 H 1.08999 * 110.51175 * 118.64692 * 26 25 23 43 43 H 1.09006 * 110.51036 * 241.35271 * 26 25 23 44 44 H 1.09000 * 110.36857 * 142.81233 * 27 26 25 45 45 H 1.08999 * 110.37561 * 265.03283 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5981 1.9841 0.8364 5 7 1.6632 2.0936 -1.2571 6 16 0.5293 3.3006 -1.2570 7 8 -0.5597 2.8279 -0.4760 8 8 0.3922 3.7224 -2.6070 9 6 1.2180 4.6632 -0.3774 10 6 0.6988 5.0311 0.8430 11 6 1.2383 6.1030 1.5368 12 6 2.3045 6.8168 1.0112 13 6 2.8433 6.4630 -0.2044 14 6 2.3005 5.3796 -0.9201 15 6 2.8421 5.0106 -2.1730 16 1 2.7912 3.9832 -2.5019 17 6 3.4443 5.9769 -2.9868 18 7 3.3114 7.2468 -2.7022 19 14 4.4379 5.4532 -4.4795 20 1 4.9675 6.6571 -5.1689 21 1 5.5690 4.5947 -4.0449 22 1 3.5677 4.6914 -5.4109 23 6 3.5636 1.4447 0.1388 24 1 3.8616 0.9278 1.0510 25 6 4.1012 2.8930 0.1417 26 6 5.4282 2.8024 -0.6446 27 6 5.5356 1.3100 -1.0291 28 8 4.1745 0.8262 -1.0145 29 1 -0.3633 0.5946 0.8382 30 1 -0.3634 0.4285 -0.9341 31 1 -0.3634 -1.0232 0.0960 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0779 1.8178 -2.0895 35 1 -0.1321 4.4827 1.2616 36 1 0.8248 6.3845 2.4941 37 1 2.7167 7.6504 1.5602 38 1 3.6769 7.0172 -0.6099 39 1 3.7285 7.9165 -3.2665 40 1 3.4030 3.5605 -0.3631 41 1 4.2818 3.2312 1.1620 42 1 5.3859 3.4253 -1.5381 43 1 6.2671 3.0951 -0.0132 44 1 5.9647 1.2049 -2.0255 45 1 6.1394 0.7723 -0.2981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601378839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:16 Heat of formation + Delta-G solvation = -114.218680 kcal Electronic energy + Delta-G solvation = -30226.489491 eV Core-core repulsion = 26335.086931 eV Total energy + Delta-G solvation = -3891.402559 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -39.40663 -37.66201 -36.38549 -35.74649 -34.78058 -33.91781 -31.80108 -31.14045 -30.23739 -29.60591 -29.14950 -25.59110 -25.18110 -22.20072 -21.68383 -21.21025 -20.58681 -20.53831 -18.69227 -17.74756 -16.90048 -16.32487 -15.96023 -15.88916 -15.37252 -15.24417 -14.59489 -14.40072 -14.10046 -13.87050 -13.36452 -13.25924 -13.15263 -13.05032 -12.76652 -12.33259 -11.95645 -11.84782 -11.54995 -11.39737 -11.35708 -11.23437 -11.17543 -11.01911 -11.00102 -10.90290 -10.73483 -10.65782 -10.58749 -10.52596 -10.48941 -10.06305 -9.93075 -9.54119 -9.44137 -9.37244 -8.71756 -8.04518 -7.60094 -7.05361 -4.78033 1.56392 2.30972 2.70822 2.94707 2.97864 3.10214 3.76176 3.94747 4.14514 4.38998 4.74507 4.83519 5.08706 5.22383 5.25362 5.29860 5.36613 5.42576 5.48824 5.63080 5.65655 5.80799 5.90402 5.93222 5.98363 6.02789 6.17433 6.21153 6.23683 6.26840 6.31998 6.38342 6.48726 6.64074 6.73435 6.76454 6.88054 6.93033 7.05469 7.14350 7.27644 7.46799 7.59234 7.72897 7.77984 7.86475 8.26228 8.47575 8.60987 9.87550 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.007174 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.303264 B = 3902.164253 C = 4827.173078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.130 4.130 3 C 0.170 3.830 4 H 0.096 0.904 5 N -1.109 6.109 6 S 2.694 3.306 7 O -0.992 6.992 8 O -0.965 6.965 9 C -0.779 4.779 10 C -0.002 4.002 11 C -0.250 4.250 12 C -0.076 4.076 13 C -0.158 4.158 14 C 0.190 3.810 15 C -0.440 4.440 16 H 0.088 0.912 17 C 0.082 3.918 18 N -0.776 5.776 19 Si 0.908 3.092 20 H -0.275 1.275 21 H -0.258 1.258 22 H -0.255 1.255 23 C 0.068 3.932 24 H 0.069 0.931 25 C -0.168 4.168 26 C -0.151 4.151 27 C 0.046 3.954 28 O -0.366 6.366 29 H 0.063 0.937 30 H 0.056 0.944 31 H 0.045 0.955 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.416 0.584 35 H 0.108 0.892 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.123 0.877 39 H 0.288 0.712 40 H 0.117 0.883 41 H 0.067 0.933 42 H 0.082 0.918 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -8.456 4.284 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C 0.062 3.938 4 H 0.114 0.886 5 N -0.865 5.865 6 S 2.791 3.209 7 O -0.983 6.983 8 O -0.955 6.955 9 C -0.874 4.874 10 C -0.022 4.022 11 C -0.271 4.271 12 C -0.095 4.095 13 C -0.178 4.178 14 C 0.185 3.815 15 C -0.468 4.468 16 H 0.106 0.894 17 C -0.139 4.139 18 N -0.399 5.399 19 Si 0.731 3.269 20 H -0.200 1.200 21 H -0.182 1.182 22 H -0.179 1.179 23 C 0.009 3.991 24 H 0.086 0.914 25 C -0.205 4.205 26 C -0.189 4.189 27 C -0.031 4.031 28 O -0.285 6.285 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.250 0.750 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.141 0.859 39 H 0.099 0.901 40 H 0.136 0.864 41 H 0.086 0.914 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.103 0.897 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.951 -8.389 3.792 10.019 hybrid contribution 1.381 0.547 -0.372 1.531 sum 5.332 -7.843 3.420 10.081 Atomic orbital electron populations 1.21785 0.94992 1.00566 1.03367 1.21864 0.96649 0.95999 1.02377 1.20718 0.92196 0.94137 0.86792 0.88588 1.55655 1.62405 1.53938 1.14504 1.01335 0.72823 0.73052 0.73726 1.93464 1.51138 1.81030 1.72635 1.93552 1.85496 1.81557 1.34893 1.29947 1.16733 1.27137 1.13586 1.20250 0.95330 0.94629 0.91989 1.20483 1.03390 1.01883 1.01310 1.20893 0.95682 0.97122 0.95777 1.21485 1.02030 1.00391 0.93890 1.16910 0.85595 0.88643 0.90309 1.19816 1.30495 0.96754 0.99783 0.89392 1.25906 0.94236 0.94227 0.99536 1.69767 1.32508 1.01337 1.36305 0.86319 0.80267 0.79503 0.80783 1.19986 1.18249 1.17933 1.23377 0.93478 0.93252 0.89013 0.91364 1.23317 0.98437 0.97466 1.01284 1.22868 0.97828 0.96648 1.01575 1.23357 0.84641 0.93723 1.01337 1.89065 1.23598 1.68857 1.46947 0.91825 0.92452 0.93555 0.91027 0.91645 0.75013 0.87438 0.88849 0.88958 0.85901 0.90104 0.86446 0.91433 0.89905 0.91531 0.89675 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.67 37.15 0.32 -1.81 16 2 C -0.13 -1.73 5.45 -26.74 -0.15 -1.87 16 3 C 0.17 2.58 2.09 -67.93 -0.14 2.43 16 4 H 0.10 1.47 7.80 -51.93 -0.41 1.06 16 5 N -1.11 -19.35 3.39 -4.89 -0.02 -19.37 16 6 S 2.69 57.35 4.85 -107.50 -0.52 56.83 16 7 O -0.99 -21.40 14.43 -57.17 -0.82 -22.22 16 8 O -0.96 -23.93 16.28 -57.17 -0.93 -24.86 16 9 C -0.78 -17.64 5.09 -38.87 -0.20 -17.84 16 10 C 0.00 -0.05 9.53 -39.66 -0.38 -0.42 16 11 C -0.25 -5.22 10.05 -39.29 -0.39 -5.62 16 12 C -0.08 -1.62 10.02 -39.66 -0.40 -2.02 16 13 C -0.16 -3.70 8.66 -38.87 -0.34 -4.04 16 14 C 0.19 4.53 3.80 -106.82 -0.41 4.13 16 15 C -0.44 -10.48 6.47 -37.74 -0.24 -10.73 16 16 H 0.09 2.01 5.89 -52.49 -0.31 1.70 16 17 C 0.08 1.91 5.24 -17.34 -0.09 1.82 16 18 N -0.78 -18.55 10.91 55.55 0.61 -17.95 16 19 Si 0.91 17.67 29.57 -169.99 -5.03 12.64 16 20 H -0.28 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 23 C 0.07 0.98 3.06 -25.95 -0.08 0.90 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 25 C -0.17 -2.69 6.53 -25.16 -0.16 -2.85 16 26 C -0.15 -2.21 7.09 -25.16 -0.18 -2.39 16 27 C 0.05 0.60 7.63 37.93 0.29 0.89 16 28 O -0.37 -5.42 10.51 -35.23 -0.37 -5.79 16 29 H 0.06 0.95 7.88 -51.93 -0.41 0.54 16 30 H 0.06 0.91 7.14 -51.93 -0.37 0.54 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.96 8.00 -51.92 -0.42 0.54 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.42 6.98 8.35 -34.47 -0.29 6.69 16 35 H 0.11 2.14 7.33 -52.49 -0.38 1.76 16 36 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 37 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 38 H 0.12 2.93 6.28 -52.48 -0.33 2.60 16 39 H 0.29 6.25 8.30 -40.82 -0.34 5.91 16 40 H 0.12 2.18 2.41 -51.93 -0.12 2.05 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 361.28 15.07 5.44 5.44 Total: -1.00 -28.35 361.28 -10.58 -38.94 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -6.40 Total: 15.76 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: -2.55 Total: -39.42 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: 0.59 Total: -37.32 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -2.13 Total: -52.87 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: 57.35 SS G_CDS: -0.52 Total: 56.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.35 -10.58 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601378839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.283 kcal (2) G-P(sol) polarization free energy of solvation -28.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds