Wall clock time and date at job start Tue Mar 31 2020 22:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47156 * 2 1 4 4 H 1.09004 * 109.47094 * 54.47744 * 3 2 1 5 5 N 1.46500 * 109.47177 * 294.47568 * 3 2 1 6 6 S 1.65601 * 119.99868 * 110.97093 * 5 3 2 7 7 O 1.42104 * 106.40105 * 312.71307 * 6 5 3 8 8 O 1.42097 * 106.40217 * 179.79220 * 6 5 3 9 9 C 1.76202 * 107.21807 * 66.25031 * 6 5 3 10 10 C 1.37632 * 120.12833 * 248.36313 * 9 6 5 11 11 C 1.38616 * 120.24506 * 180.02562 * 10 9 6 12 12 C 1.38657 * 120.50509 * 0.04667 * 11 10 9 13 13 C 1.37594 * 120.24347 * 359.66715 * 12 11 10 14 14 C 1.40699 * 120.12443 * 68.38816 * 9 6 5 15 15 C 1.41396 * 120.24394 * 359.97438 * 14 9 6 16 16 H 1.07997 * 120.00155 * 331.10968 * 15 14 9 17 17 C 1.39950 * 119.99626 * 151.11597 * 15 14 9 18 18 N 1.30816 * 120.00096 * 348.50529 * 17 15 14 19 19 Si 1.86801 * 119.99524 * 168.50113 * 17 15 14 20 20 H 1.48504 * 109.47073 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47399 * 299.99897 * 19 17 15 22 22 H 1.48500 * 109.47141 * 60.00388 * 19 17 15 23 23 C 1.53002 * 109.47179 * 174.47954 * 3 2 1 24 24 H 1.09003 * 110.32944 * 302.25098 * 23 3 2 25 25 C 1.54480 * 110.37087 * 180.02562 * 23 3 2 26 26 C 1.54513 * 104.05800 * 217.18864 * 25 23 3 27 27 C 1.54479 * 104.06333 * 359.97438 * 26 25 23 28 28 O 1.44418 * 110.37402 * 64.61864 * 23 3 2 29 29 H 1.09005 * 109.46947 * 305.35253 * 1 2 3 30 30 H 1.09001 * 109.47638 * 65.35928 * 1 2 3 31 31 H 1.09006 * 109.47260 * 185.35917 * 1 2 3 32 32 H 1.09008 * 109.47184 * 240.00306 * 2 1 3 33 33 H 1.08999 * 109.47251 * 120.00234 * 2 1 3 34 34 H 0.97000 * 120.00242 * 290.97691 * 5 3 2 35 35 H 1.07998 * 119.88150 * 0.02562 * 10 9 6 36 36 H 1.08007 * 119.74445 * 180.02562 * 11 10 9 37 37 H 1.07997 * 119.87689 * 179.97438 * 12 11 10 38 38 H 1.08004 * 120.12633 * 180.30215 * 13 12 11 39 39 H 0.97002 * 119.99623 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.51042 * 335.82736 * 25 23 3 41 41 H 1.08995 * 110.51183 * 98.40752 * 25 23 3 42 42 H 1.08999 * 110.51175 * 118.64692 * 26 25 23 43 43 H 1.09006 * 110.51036 * 241.35271 * 26 25 23 44 44 H 1.09000 * 110.36857 * 142.81233 * 27 26 25 45 45 H 1.08999 * 110.37561 * 265.03283 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5981 1.9841 0.8364 5 7 1.6632 2.0936 -1.2571 6 16 0.5293 3.3006 -1.2570 7 8 -0.5597 2.8279 -0.4760 8 8 0.3922 3.7224 -2.6070 9 6 1.2180 4.6632 -0.3774 10 6 0.6988 5.0311 0.8430 11 6 1.2383 6.1030 1.5368 12 6 2.3045 6.8168 1.0112 13 6 2.8433 6.4630 -0.2044 14 6 2.3005 5.3796 -0.9201 15 6 2.8421 5.0106 -2.1730 16 1 2.7912 3.9832 -2.5019 17 6 3.4443 5.9769 -2.9868 18 7 3.3114 7.2468 -2.7022 19 14 4.4379 5.4532 -4.4795 20 1 4.9675 6.6571 -5.1689 21 1 5.5690 4.5947 -4.0449 22 1 3.5677 4.6914 -5.4109 23 6 3.5636 1.4447 0.1388 24 1 3.8616 0.9278 1.0510 25 6 4.1012 2.8930 0.1417 26 6 5.4282 2.8024 -0.6446 27 6 5.5356 1.3100 -1.0291 28 8 4.1745 0.8262 -1.0145 29 1 -0.3633 0.5946 0.8382 30 1 -0.3634 0.4285 -0.9341 31 1 -0.3634 -1.0232 0.0960 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0779 1.8178 -2.0895 35 1 -0.1321 4.4827 1.2616 36 1 0.8248 6.3845 2.4941 37 1 2.7167 7.6504 1.5602 38 1 3.6769 7.0172 -0.6099 39 1 3.7285 7.9165 -3.2665 40 1 3.4030 3.5605 -0.3631 41 1 4.2818 3.2312 1.1620 42 1 5.3859 3.4253 -1.5381 43 1 6.2671 3.0951 -0.0132 44 1 5.9647 1.2049 -2.0255 45 1 6.1394 0.7723 -0.2981 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601378839.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:15 Heat of formation + Delta-G solvation = -131.614637 kcal Electronic energy + Delta-G solvation = -30227.243836 eV Core-core repulsion = 26335.086931 eV Total energy + Delta-G solvation = -3892.156905 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.55597 -39.36174 -38.04730 -37.07921 -36.57188 -35.64210 -33.00668 -32.38187 -31.92000 -31.32396 -30.31707 -27.31775 -26.35384 -23.40886 -23.26474 -22.92123 -21.76450 -21.72557 -20.28089 -19.48210 -18.51403 -17.80817 -17.48446 -17.16507 -16.84711 -16.46605 -16.11606 -16.02210 -15.37638 -15.16748 -15.02668 -14.73988 -14.52939 -14.43968 -14.27082 -13.62662 -13.45133 -13.22490 -13.06072 -12.97480 -12.96594 -12.83033 -12.74451 -12.61156 -12.43211 -12.38903 -12.15967 -12.03951 -11.91406 -11.80776 -11.63880 -11.62892 -11.30481 -11.09541 -11.04105 -10.60465 -10.11168 -9.76634 -9.33655 -8.77467 -6.55985 -0.10079 0.57399 1.00975 1.34812 1.44610 1.50922 2.15350 2.40676 2.67034 2.99148 3.11962 3.52875 3.64948 3.89012 3.94646 4.12608 4.23330 4.27214 4.32771 4.38374 4.44966 4.51606 4.54306 4.64646 4.75138 4.80500 4.82754 4.92736 4.99315 5.07401 5.09427 5.17985 5.18812 5.20462 5.32016 5.33159 5.50328 5.55203 5.60603 5.63743 5.75523 5.86868 6.04383 6.05445 6.12618 6.31210 6.52149 6.72037 6.87249 8.18183 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009859 B = 0.007174 C = 0.005799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.303264 B = 3902.164253 C = 4827.173078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C 0.161 3.839 4 H 0.093 0.907 5 N -1.098 6.098 6 S 2.710 3.290 7 O -0.998 6.998 8 O -1.006 7.006 9 C -0.790 4.790 10 C -0.013 4.013 11 C -0.249 4.249 12 C -0.075 4.075 13 C -0.182 4.182 14 C 0.178 3.822 15 C -0.460 4.460 16 H 0.087 0.913 17 C 0.044 3.956 18 N -0.808 5.808 19 Si 0.959 3.041 20 H -0.265 1.265 21 H -0.240 1.240 22 H -0.267 1.267 23 C 0.076 3.924 24 H 0.098 0.902 25 C -0.179 4.179 26 C -0.152 4.152 27 C 0.048 3.952 28 O -0.378 6.378 29 H 0.053 0.947 30 H 0.033 0.967 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.094 0.906 34 H 0.419 0.581 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.293 0.707 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.093 0.907 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.968 -10.079 5.557 12.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C 0.054 3.946 4 H 0.111 0.889 5 N -0.857 5.857 6 S 2.806 3.194 7 O -0.988 6.988 8 O -0.996 6.996 9 C -0.884 4.884 10 C -0.033 4.033 11 C -0.269 4.269 12 C -0.094 4.094 13 C -0.202 4.202 14 C 0.174 3.826 15 C -0.488 4.488 16 H 0.105 0.895 17 C -0.174 4.174 18 N -0.432 5.432 19 Si 0.779 3.221 20 H -0.189 1.189 21 H -0.163 1.163 22 H -0.192 1.192 23 C 0.016 3.984 24 H 0.115 0.885 25 C -0.217 4.217 26 C -0.189 4.189 27 C -0.029 4.029 28 O -0.298 6.298 29 H 0.072 0.928 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.254 0.746 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.101 0.899 44 H 0.111 0.889 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.995 -10.004 5.083 12.283 hybrid contribution 0.995 1.038 -0.643 1.575 sum 5.989 -8.966 4.440 11.661 Atomic orbital electron populations 1.21801 0.95860 1.01632 1.01656 1.21834 0.95767 0.94677 1.03852 1.21018 0.93233 0.95066 0.85324 0.88879 1.55293 1.61809 1.52788 1.15769 1.00682 0.73079 0.73078 0.72534 1.93448 1.51853 1.81037 1.72465 1.93491 1.86410 1.82587 1.37135 1.30155 1.16470 1.27785 1.14006 1.20543 0.95761 0.95131 0.91846 1.20848 1.02751 1.01035 1.02288 1.21211 0.95496 0.97572 0.95141 1.21508 1.02557 1.01082 0.95052 1.17077 0.85962 0.88996 0.90584 1.19960 1.31572 0.96960 1.00331 0.89458 1.26634 0.94800 0.94161 1.01789 1.69810 1.33661 1.02121 1.37647 0.85571 0.79347 0.79586 0.77572 1.18890 1.16321 1.19186 1.23363 0.92514 0.92445 0.90032 0.88468 1.23345 0.98789 0.98275 1.01277 1.22846 0.97793 0.97675 1.00629 1.23481 0.84167 0.92536 1.02692 1.89047 1.24603 1.68811 1.47301 0.92798 0.94767 0.91261 0.90826 0.88747 0.74594 0.86015 0.85801 0.86407 0.87106 0.89570 0.88886 0.91176 0.92415 0.89933 0.88874 0.90444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.09 8.67 71.98 0.62 -3.47 16 2 C -0.12 -2.95 5.45 30.59 0.17 -2.78 16 3 C 0.16 4.63 2.09 44.99 0.09 4.72 16 4 H 0.09 2.73 7.80 -2.38 -0.02 2.71 16 5 N -1.10 -38.11 3.39 -169.39 -0.57 -38.69 16 6 S 2.71 116.91 4.85 -56.49 -0.27 116.64 16 7 O -1.00 -43.08 14.43 -128.00 -1.85 -44.93 16 8 O -1.01 -51.40 16.28 -128.00 -2.08 -53.48 16 9 C -0.79 -36.09 5.09 22.73 0.12 -35.97 16 10 C -0.01 -0.56 9.53 22.22 0.21 -0.34 16 11 C -0.25 -9.99 10.05 22.46 0.23 -9.77 16 12 C -0.08 -3.17 10.02 22.22 0.22 -2.95 16 13 C -0.18 -8.66 8.66 22.73 0.20 -8.46 16 14 C 0.18 8.67 3.80 -21.29 -0.08 8.59 16 15 C -0.46 -22.50 6.47 23.46 0.15 -22.34 16 16 H 0.09 4.13 5.89 -2.91 -0.02 4.11 16 17 C 0.04 2.10 5.24 85.26 0.45 2.55 16 18 N -0.81 -39.72 10.91 21.83 0.24 -39.49 16 19 Si 0.96 36.59 29.57 68.60 2.03 38.62 16 20 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.24 -8.34 7.11 99.48 0.71 -7.63 16 22 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 23 C 0.08 2.00 3.06 31.10 0.10 2.09 16 24 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 25 C -0.18 -5.57 6.53 31.61 0.21 -5.36 16 26 C -0.15 -4.24 7.09 31.61 0.22 -4.02 16 27 C 0.05 1.12 7.63 72.48 0.55 1.67 16 28 O -0.38 -10.33 10.51 -148.98 -1.57 -11.89 16 29 H 0.05 1.53 7.88 -2.38 -0.02 1.52 16 30 H 0.03 1.06 7.14 -2.39 -0.02 1.04 16 31 H 0.07 1.51 8.14 -2.38 -0.02 1.50 16 32 H 0.07 1.78 8.00 -2.38 -0.02 1.76 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.42 14.13 8.35 -96.75 -0.81 13.32 16 35 H 0.12 4.72 7.33 -2.91 -0.02 4.70 16 36 H 0.12 4.16 8.06 -2.91 -0.02 4.14 16 37 H 0.12 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.11 5.46 6.28 -2.91 -0.02 5.44 16 39 H 0.29 13.08 8.30 -92.71 -0.77 12.31 16 40 H 0.09 3.45 2.41 -2.39 -0.01 3.44 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -61.72 361.28 -0.42 -62.14 By element: Atomic # 1 Polarization: 46.71 SS G_CDS: 0.21 Total: 46.92 kcal Atomic # 6 Polarization: -79.29 SS G_CDS: 3.45 Total: -75.84 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -0.34 Total: -78.17 kcal Atomic # 8 Polarization: -104.80 SS G_CDS: -5.50 Total: -110.30 kcal Atomic # 14 Polarization: 36.59 SS G_CDS: 2.03 Total: 38.62 kcal Atomic # 16 Polarization: 116.91 SS G_CDS: -0.27 Total: 116.64 kcal Total: -61.72 -0.42 -62.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601378839.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.479 kcal (2) G-P(sol) polarization free energy of solvation -61.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds