Wall clock time and date at job start Tue Mar 31 2020 22:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47089 * 2 1 4 4 H 1.09000 * 109.46926 * 302.97423 * 3 2 1 5 5 N 1.46501 * 109.46804 * 62.96684 * 3 2 1 6 6 S 1.65595 * 120.00082 * 247.14372 * 5 3 2 7 7 O 1.42101 * 106.40220 * 180.10736 * 6 5 3 8 8 O 1.42102 * 106.40386 * 47.18741 * 6 5 3 9 9 C 1.76199 * 107.22324 * 293.64689 * 6 5 3 10 10 C 1.37636 * 120.12820 * 112.04939 * 9 6 5 11 11 C 1.38610 * 120.24912 * 180.02562 * 10 9 6 12 12 C 1.38658 * 120.50271 * 0.04995 * 11 10 9 13 13 C 1.37597 * 120.24379 * 359.67119 * 12 11 10 14 14 C 1.40698 * 120.12808 * 292.07793 * 9 6 5 15 15 C 1.41398 * 120.24227 * 359.97438 * 14 9 6 16 16 H 1.08003 * 120.00240 * 28.67498 * 15 14 9 17 17 C 1.39949 * 119.99926 * 208.66825 * 15 14 9 18 18 N 1.30823 * 119.99781 * 17.00308 * 17 15 14 19 19 Si 1.86797 * 120.00069 * 196.99737 * 17 15 14 20 20 H 1.48498 * 109.47144 * 180.02562 * 19 17 15 21 21 H 1.48494 * 109.47236 * 300.00594 * 19 17 15 22 22 H 1.48505 * 109.47076 * 60.00408 * 19 17 15 23 23 C 1.52995 * 109.47271 * 182.96807 * 3 2 1 24 24 H 1.08997 * 109.82745 * 300.56646 * 23 3 2 25 25 C 1.54384 * 109.83097 * 179.58709 * 23 3 2 26 26 C 1.55305 * 102.25221 * 219.13162 * 25 23 3 27 27 C 1.54938 * 100.94328 * 34.13289 * 26 25 23 28 28 O 1.43240 * 109.83098 * 61.45499 * 23 3 2 29 29 H 1.09000 * 109.47387 * 53.09054 * 1 2 3 30 30 H 1.09006 * 109.47003 * 173.08764 * 1 2 3 31 31 H 1.09005 * 109.47488 * 293.08415 * 1 2 3 32 32 H 1.09004 * 109.47459 * 240.00172 * 2 1 3 33 33 H 1.08998 * 109.47488 * 119.99447 * 2 1 3 34 34 H 0.97007 * 119.99872 * 67.14955 * 5 3 2 35 35 H 1.08005 * 119.87540 * 0.03182 * 10 9 6 36 36 H 1.08002 * 119.74962 * 180.02562 * 11 10 9 37 37 H 1.08003 * 119.87704 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.12607 * 180.30161 * 13 12 11 39 39 H 0.96999 * 119.99617 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.84809 * 337.32235 * 25 23 3 41 41 H 1.09002 * 110.84494 * 100.93926 * 25 23 3 42 42 H 1.09004 * 111.12222 * 276.21277 * 26 25 23 43 43 H 1.08997 * 111.12349 * 152.05397 * 26 25 23 44 44 H 1.09004 * 110.31113 * 204.63707 * 27 26 25 45 45 H 1.09004 * 110.38988 * 82.51349 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6337 1.9715 -0.8621 5 7 1.6108 2.1121 1.2303 6 16 0.5131 3.3500 1.1597 7 8 0.3097 3.7827 2.4979 8 8 -0.5415 2.9036 0.3184 9 6 1.2895 4.6883 0.3167 10 6 0.8469 5.0695 -0.9296 11 6 1.4562 6.1216 -1.5953 12 6 2.5171 6.8010 -1.0161 13 6 2.9723 6.4408 0.2315 14 6 2.3645 5.3711 0.9146 15 6 2.8278 4.9883 2.1946 16 1 2.7236 3.9646 2.5227 17 6 3.4214 5.9359 3.0361 18 7 3.2575 7.2125 2.8019 19 14 4.4475 5.3779 4.4939 20 1 4.9606 6.5662 5.2219 21 1 3.6073 4.5629 5.4076 22 1 5.5899 4.5611 4.0113 23 6 3.5681 1.4432 -0.0747 24 1 3.9802 0.9068 0.7800 25 6 4.0912 2.8957 -0.0856 26 6 5.2623 2.8165 -1.1027 27 6 4.7151 1.7645 -2.0999 28 8 3.9954 0.8201 -1.2916 29 1 -0.3634 0.6172 -0.8217 30 1 -0.3633 -1.0203 -0.1237 31 1 -0.3634 0.4029 0.9454 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.9698 1.8304 2.0864 35 1 0.0218 4.5468 -1.3906 36 1 1.1021 6.4142 -2.5728 37 1 2.9846 7.6190 -1.5439 38 1 3.7957 6.9745 0.6830 39 1 3.6693 7.8693 3.3850 40 1 3.3205 3.5830 -0.4343 41 1 4.4531 3.1851 0.9010 42 1 6.1760 2.4653 -0.6231 43 1 5.4223 3.7768 -1.5930 44 1 5.5373 1.2704 -2.6176 45 1 4.0448 2.2355 -2.8190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601378840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:20 Heat of formation + Delta-G solvation = -117.409930 kcal Electronic energy + Delta-G solvation = -30048.774247 eV Core-core repulsion = 26157.233305 eV Total energy + Delta-G solvation = -3891.540942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.48649 -37.67518 -36.41665 -35.87236 -34.81497 -33.93925 -31.98731 -31.05643 -30.26596 -29.64397 -29.18498 -25.61930 -25.15293 -22.07982 -21.70599 -21.22902 -20.90472 -20.48577 -18.78226 -17.75399 -17.05814 -16.48254 -16.12241 -15.82450 -15.41518 -15.16036 -14.58515 -14.34687 -14.30460 -13.83815 -13.39437 -13.31845 -13.14208 -12.92807 -12.78342 -12.25502 -12.03398 -11.91293 -11.63775 -11.46257 -11.36027 -11.30101 -11.20538 -11.13625 -11.04226 -10.96476 -10.78324 -10.66511 -10.63805 -10.57664 -10.50404 -10.34972 -9.93887 -9.61991 -9.44194 -9.26293 -8.70839 -8.06582 -7.65907 -7.11904 -4.79567 1.52081 2.29434 2.68372 2.92271 2.94539 3.07089 3.72201 3.75683 4.22640 4.35650 4.70633 4.83659 4.87537 5.16024 5.21593 5.29539 5.37170 5.39351 5.56568 5.59152 5.71265 5.73171 5.86634 5.94133 6.00461 6.06654 6.09862 6.18300 6.19598 6.26158 6.28408 6.37194 6.48112 6.61893 6.69751 6.72430 6.75427 6.87951 7.02593 7.21602 7.24968 7.44364 7.51528 7.63464 7.75526 7.83969 8.22404 8.44242 8.58626 9.83124 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009977 B = 0.006276 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.844738 B = 4460.624795 C = 4723.816834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.154 3.846 4 H 0.090 0.910 5 N -1.113 6.113 6 S 2.696 3.304 7 O -0.964 6.964 8 O -0.991 6.991 9 C -0.779 4.779 10 C -0.001 4.001 11 C -0.252 4.252 12 C -0.074 4.074 13 C -0.160 4.160 14 C 0.195 3.805 15 C -0.444 4.444 16 H 0.087 0.913 17 C 0.084 3.916 18 N -0.769 5.769 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.256 1.256 22 H -0.259 1.259 23 C 0.073 3.927 24 H 0.080 0.920 25 C -0.155 4.155 26 C -0.155 4.155 27 C 0.050 3.950 28 O -0.378 6.378 29 H 0.065 0.935 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.410 0.590 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.289 0.711 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.079 0.921 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.729 -7.865 -4.252 10.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.046 3.954 4 H 0.108 0.892 5 N -0.869 5.869 6 S 2.793 3.207 7 O -0.955 6.955 8 O -0.982 6.982 9 C -0.874 4.874 10 C -0.021 4.021 11 C -0.272 4.272 12 C -0.093 4.093 13 C -0.180 4.180 14 C 0.190 3.810 15 C -0.472 4.472 16 H 0.105 0.895 17 C -0.138 4.138 18 N -0.392 5.392 19 Si 0.730 3.270 20 H -0.199 1.199 21 H -0.180 1.180 22 H -0.183 1.183 23 C 0.014 3.986 24 H 0.098 0.902 25 C -0.193 4.193 26 C -0.193 4.193 27 C -0.026 4.026 28 O -0.297 6.297 29 H 0.084 0.916 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.243 0.757 35 H 0.125 0.875 36 H 0.111 0.889 37 H 0.110 0.890 38 H 0.135 0.865 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.788 -7.842 -4.029 9.595 hybrid contribution 1.255 0.621 0.700 1.565 sum 5.042 -7.221 -3.329 9.415 Atomic orbital electron populations 1.21775 0.95198 1.00669 1.03069 1.21841 0.96498 0.95969 1.02330 1.20936 0.93622 0.93960 0.86894 0.89207 1.55753 1.64940 1.52595 1.13610 1.01270 0.72881 0.72894 0.73629 1.93554 1.84736 1.81134 1.36034 1.93465 1.53094 1.81717 1.69903 1.29883 1.18043 1.27528 1.11948 1.20261 0.95337 0.94390 0.92080 1.20462 1.03245 1.02657 1.00853 1.20870 0.95838 0.97136 0.95487 1.21366 1.02157 1.00620 0.93830 1.16877 0.85379 0.88258 0.90509 1.19772 1.32136 0.97313 0.97950 0.89510 1.25914 0.94290 0.94207 0.99428 1.69795 1.31889 1.01846 1.35662 0.86337 0.80333 0.79727 0.80584 1.19935 1.18042 1.18306 1.23095 0.93824 0.94113 0.87548 0.90239 1.23413 0.98472 0.96046 1.01323 1.23226 0.98907 0.99799 0.97358 1.23365 0.95120 0.90348 0.93811 1.88358 1.73971 1.36266 1.31107 0.91605 0.93532 0.92893 0.90632 0.92022 0.75657 0.87489 0.88853 0.88974 0.86454 0.90017 0.88322 0.88919 0.91053 0.90071 0.90329 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.71 37.15 0.32 -1.85 16 2 C -0.13 -1.73 5.53 -26.73 -0.15 -1.88 16 3 C 0.15 2.35 1.92 -67.93 -0.13 2.22 16 4 H 0.09 1.48 7.76 -51.93 -0.40 1.08 16 5 N -1.11 -18.47 3.83 -4.89 -0.02 -18.49 16 6 S 2.70 56.50 4.85 -107.50 -0.52 55.98 16 7 O -0.96 -23.45 16.31 -57.17 -0.93 -24.39 16 8 O -0.99 -21.46 14.76 -57.17 -0.84 -22.30 16 9 C -0.78 -17.40 4.58 -38.87 -0.18 -17.58 16 10 C 0.00 -0.02 9.53 -39.66 -0.38 -0.40 16 11 C -0.25 -5.21 10.05 -39.29 -0.39 -5.61 16 12 C -0.07 -1.57 10.02 -39.66 -0.40 -1.97 16 13 C -0.16 -3.67 8.67 -38.87 -0.34 -4.01 16 14 C 0.19 4.54 3.87 -106.83 -0.41 4.12 16 15 C -0.44 -10.31 6.74 -37.74 -0.25 -10.56 16 16 H 0.09 1.89 5.93 -52.48 -0.31 1.58 16 17 C 0.08 1.92 5.12 -17.34 -0.09 1.83 16 18 N -0.77 -18.20 11.18 55.55 0.62 -17.58 16 19 Si 0.91 17.12 29.59 -169.99 -5.03 12.09 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.53 16 22 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16 23 C 0.07 1.06 3.27 -26.01 -0.09 0.98 16 24 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 25 C -0.16 -2.44 5.57 -24.78 -0.14 -2.57 16 26 C -0.16 -2.06 7.16 -24.49 -0.18 -2.24 16 27 C 0.05 0.64 7.78 38.18 0.30 0.93 16 28 O -0.38 -5.48 10.37 -35.23 -0.37 -5.84 16 29 H 0.06 1.04 7.70 -51.93 -0.40 0.64 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.05 0.82 7.54 -51.93 -0.39 0.43 16 32 H 0.08 0.99 7.65 -51.93 -0.40 0.59 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.41 6.01 8.78 -34.47 -0.30 5.71 16 35 H 0.11 2.16 7.33 -52.48 -0.38 1.77 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.09 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.12 2.74 6.44 -52.48 -0.34 2.40 16 39 H 0.29 6.19 8.30 -40.82 -0.34 5.85 16 40 H 0.10 1.77 4.87 -51.93 -0.25 1.52 16 41 H 0.09 1.52 7.51 -51.93 -0.39 1.13 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 45 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 363.65 15.07 5.48 5.48 Total: -1.00 -28.23 363.65 -10.62 -38.85 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -6.51 Total: 14.78 kcal Atomic # 6 Polarization: -36.07 SS G_CDS: -2.50 Total: -38.57 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.60 Total: -36.07 kcal Atomic # 8 Polarization: -50.39 SS G_CDS: -2.14 Total: -52.54 kcal Atomic # 14 Polarization: 17.12 SS G_CDS: -5.03 Total: 12.09 kcal Atomic # 16 Polarization: 56.50 SS G_CDS: -0.52 Total: 55.98 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.23 -10.62 -38.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601378840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.557 kcal (2) G-P(sol) polarization free energy of solvation -28.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds