Wall clock time and date at job start Tue Mar 31 2020 22:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53005 * 109.47089 * 2 1 4 4 H 1.09000 * 109.46926 * 302.97423 * 3 2 1 5 5 N 1.46501 * 109.46804 * 62.96684 * 3 2 1 6 6 S 1.65595 * 120.00082 * 247.14372 * 5 3 2 7 7 O 1.42101 * 106.40220 * 180.10736 * 6 5 3 8 8 O 1.42102 * 106.40386 * 47.18741 * 6 5 3 9 9 C 1.76199 * 107.22324 * 293.64689 * 6 5 3 10 10 C 1.37636 * 120.12820 * 112.04939 * 9 6 5 11 11 C 1.38610 * 120.24912 * 180.02562 * 10 9 6 12 12 C 1.38658 * 120.50271 * 0.04995 * 11 10 9 13 13 C 1.37597 * 120.24379 * 359.67119 * 12 11 10 14 14 C 1.40698 * 120.12808 * 292.07793 * 9 6 5 15 15 C 1.41398 * 120.24227 * 359.97438 * 14 9 6 16 16 H 1.08003 * 120.00240 * 28.67498 * 15 14 9 17 17 C 1.39949 * 119.99926 * 208.66825 * 15 14 9 18 18 N 1.30823 * 119.99781 * 17.00308 * 17 15 14 19 19 Si 1.86797 * 120.00069 * 196.99737 * 17 15 14 20 20 H 1.48498 * 109.47144 * 180.02562 * 19 17 15 21 21 H 1.48494 * 109.47236 * 300.00594 * 19 17 15 22 22 H 1.48505 * 109.47076 * 60.00408 * 19 17 15 23 23 C 1.52995 * 109.47271 * 182.96807 * 3 2 1 24 24 H 1.08997 * 109.82745 * 300.56646 * 23 3 2 25 25 C 1.54384 * 109.83097 * 179.58709 * 23 3 2 26 26 C 1.55305 * 102.25221 * 219.13162 * 25 23 3 27 27 C 1.54938 * 100.94328 * 34.13289 * 26 25 23 28 28 O 1.43240 * 109.83098 * 61.45499 * 23 3 2 29 29 H 1.09000 * 109.47387 * 53.09054 * 1 2 3 30 30 H 1.09006 * 109.47003 * 173.08764 * 1 2 3 31 31 H 1.09005 * 109.47488 * 293.08415 * 1 2 3 32 32 H 1.09004 * 109.47459 * 240.00172 * 2 1 3 33 33 H 1.08998 * 109.47488 * 119.99447 * 2 1 3 34 34 H 0.97007 * 119.99872 * 67.14955 * 5 3 2 35 35 H 1.08005 * 119.87540 * 0.03182 * 10 9 6 36 36 H 1.08002 * 119.74962 * 180.02562 * 11 10 9 37 37 H 1.08003 * 119.87704 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.12607 * 180.30161 * 13 12 11 39 39 H 0.96999 * 119.99617 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.84809 * 337.32235 * 25 23 3 41 41 H 1.09002 * 110.84494 * 100.93926 * 25 23 3 42 42 H 1.09004 * 111.12222 * 276.21277 * 26 25 23 43 43 H 1.08997 * 111.12349 * 152.05397 * 26 25 23 44 44 H 1.09004 * 110.31113 * 204.63707 * 27 26 25 45 45 H 1.09004 * 110.38988 * 82.51349 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6337 1.9715 -0.8621 5 7 1.6108 2.1121 1.2303 6 16 0.5131 3.3500 1.1597 7 8 0.3097 3.7827 2.4979 8 8 -0.5415 2.9036 0.3184 9 6 1.2895 4.6883 0.3167 10 6 0.8469 5.0695 -0.9296 11 6 1.4562 6.1216 -1.5953 12 6 2.5171 6.8010 -1.0161 13 6 2.9723 6.4408 0.2315 14 6 2.3645 5.3711 0.9146 15 6 2.8278 4.9883 2.1946 16 1 2.7236 3.9646 2.5227 17 6 3.4214 5.9359 3.0361 18 7 3.2575 7.2125 2.8019 19 14 4.4475 5.3779 4.4939 20 1 4.9606 6.5662 5.2219 21 1 3.6073 4.5629 5.4076 22 1 5.5899 4.5611 4.0113 23 6 3.5681 1.4432 -0.0747 24 1 3.9802 0.9068 0.7800 25 6 4.0912 2.8957 -0.0856 26 6 5.2623 2.8165 -1.1027 27 6 4.7151 1.7645 -2.0999 28 8 3.9954 0.8201 -1.2916 29 1 -0.3634 0.6172 -0.8217 30 1 -0.3633 -1.0203 -0.1237 31 1 -0.3634 0.4029 0.9454 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.9698 1.8304 2.0864 35 1 0.0218 4.5468 -1.3906 36 1 1.1021 6.4142 -2.5728 37 1 2.9846 7.6190 -1.5439 38 1 3.7957 6.9745 0.6830 39 1 3.6693 7.8693 3.3850 40 1 3.3205 3.5830 -0.4343 41 1 4.4531 3.1851 0.9010 42 1 6.1760 2.4653 -0.6231 43 1 5.4223 3.7768 -1.5930 44 1 5.5373 1.2704 -2.6176 45 1 4.0448 2.2355 -2.8190 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601378840.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:19 Heat of formation + Delta-G solvation = -134.684424 kcal Electronic energy + Delta-G solvation = -30049.523326 eV Core-core repulsion = 26157.233305 eV Total energy + Delta-G solvation = -3892.290021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.63903 -39.35797 -38.05670 -37.23652 -36.59546 -35.63647 -33.16628 -32.28629 -31.94572 -31.34680 -30.35879 -27.32126 -26.35443 -23.41043 -23.15737 -22.92170 -22.07392 -21.69041 -20.36098 -19.46381 -18.60498 -17.80368 -17.73069 -17.18796 -16.86469 -16.55686 -16.04477 -15.78980 -15.65136 -15.19254 -15.02879 -14.78820 -14.50974 -14.42430 -14.07225 -13.64635 -13.40086 -13.30049 -13.12940 -13.01164 -12.94907 -12.83704 -12.76601 -12.73026 -12.54269 -12.38945 -12.17868 -12.11022 -11.95649 -11.85406 -11.66320 -11.62191 -11.53114 -11.10561 -11.07259 -10.60998 -10.02818 -9.76566 -9.38418 -8.80416 -6.54688 -0.12738 0.57973 1.01292 1.38227 1.48072 1.53552 2.16607 2.30835 2.64799 3.01565 3.08558 3.52485 3.61997 3.74769 3.89154 4.08205 4.17925 4.24953 4.29230 4.35963 4.44740 4.48018 4.52421 4.59069 4.74460 4.75993 4.87046 4.93551 5.02356 5.02637 5.08695 5.11702 5.16487 5.19751 5.28752 5.32969 5.41549 5.51873 5.55291 5.56157 5.75184 5.83853 6.04353 6.09494 6.12850 6.29582 6.51119 6.71629 6.87293 8.17458 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009977 B = 0.006276 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.844738 B = 4460.624795 C = 4723.816834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.151 3.849 4 H 0.074 0.926 5 N -1.099 6.099 6 S 2.713 3.287 7 O -1.002 7.002 8 O -1.001 7.001 9 C -0.790 4.790 10 C -0.014 4.014 11 C -0.252 4.252 12 C -0.074 4.074 13 C -0.182 4.182 14 C 0.183 3.817 15 C -0.466 4.466 16 H 0.092 0.908 17 C 0.045 3.955 18 N -0.804 5.804 19 Si 0.965 3.035 20 H -0.268 1.268 21 H -0.262 1.262 22 H -0.242 1.242 23 C 0.081 3.919 24 H 0.096 0.904 25 C -0.160 4.160 26 C -0.151 4.151 27 C 0.048 3.952 28 O -0.384 6.384 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.421 0.579 35 H 0.117 0.883 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.107 0.893 39 H 0.294 0.706 40 H 0.073 0.927 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.105 0.895 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.000 -9.407 -4.766 12.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C 0.044 3.956 4 H 0.092 0.908 5 N -0.859 5.859 6 S 2.809 3.191 7 O -0.992 6.992 8 O -0.992 6.992 9 C -0.885 4.885 10 C -0.033 4.033 11 C -0.272 4.272 12 C -0.093 4.093 13 C -0.202 4.202 14 C 0.179 3.821 15 C -0.493 4.493 16 H 0.110 0.890 17 C -0.174 4.174 18 N -0.428 5.428 19 Si 0.784 3.216 20 H -0.192 1.192 21 H -0.187 1.187 22 H -0.165 1.165 23 C 0.021 3.979 24 H 0.114 0.886 25 C -0.198 4.198 26 C -0.188 4.188 27 C -0.028 4.028 28 O -0.303 6.303 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.257 0.743 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.135 0.865 38 H 0.125 0.875 39 H 0.105 0.895 40 H 0.092 0.908 41 H 0.100 0.900 42 H 0.104 0.896 43 H 0.097 0.903 44 H 0.123 0.877 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 5.063 -9.376 -4.561 11.591 hybrid contribution 0.798 1.094 0.730 1.539 sum 5.861 -8.282 -3.831 10.845 Atomic orbital electron populations 1.21788 0.95970 1.01666 1.01496 1.21817 0.95718 0.94708 1.03748 1.21083 0.94471 0.94658 0.85416 0.90831 1.55311 1.64410 1.51300 1.14872 1.00587 0.73057 0.72967 0.72453 1.93499 1.85628 1.82141 1.37924 1.93446 1.54009 1.81812 1.69897 1.30086 1.17834 1.28268 1.12294 1.20517 0.95798 0.94905 0.92123 1.20799 1.02683 1.01898 1.01850 1.21170 0.95693 0.97486 0.94920 1.21400 1.02607 1.01299 0.94850 1.17049 0.85653 0.88544 0.90885 1.20006 1.33147 0.97830 0.98361 0.88964 1.26710 0.94856 0.94114 1.01750 1.69841 1.33046 1.02820 1.37086 0.85487 0.79185 0.79534 0.77351 1.19247 1.18671 1.16520 1.23015 0.92954 0.93535 0.88357 0.88582 1.23338 0.98828 0.96317 1.01289 1.23219 0.98589 1.00105 0.96918 1.23498 0.95665 0.90187 0.93417 1.88344 1.74198 1.36589 1.31123 0.93410 0.91182 0.94337 0.89532 0.90138 0.74350 0.86552 0.86098 0.86450 0.87531 0.89463 0.90846 0.90037 0.89560 0.90285 0.87662 0.92677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 8.71 71.98 0.63 -3.57 16 2 C -0.12 -3.03 5.53 30.59 0.17 -2.86 16 3 C 0.15 4.46 1.92 44.99 0.09 4.55 16 4 H 0.07 2.42 7.76 -2.39 -0.02 2.40 16 5 N -1.10 -36.07 3.83 -169.39 -0.65 -36.72 16 6 S 2.71 115.11 4.85 -56.49 -0.27 114.83 16 7 O -1.00 -49.70 16.31 -128.00 -2.09 -51.79 16 8 O -1.00 -43.74 14.76 -128.00 -1.89 -45.62 16 9 C -0.79 -35.81 4.58 22.73 0.10 -35.71 16 10 C -0.01 -0.59 9.53 22.22 0.21 -0.38 16 11 C -0.25 -10.20 10.05 22.46 0.23 -9.98 16 12 C -0.07 -3.08 10.02 22.22 0.22 -2.86 16 13 C -0.18 -8.48 8.67 22.73 0.20 -8.28 16 14 C 0.18 8.71 3.87 -21.29 -0.08 8.63 16 15 C -0.47 -21.98 6.74 23.46 0.16 -21.82 16 16 H 0.09 4.08 5.93 -2.91 -0.02 4.06 16 17 C 0.04 2.06 5.12 85.26 0.44 2.49 16 18 N -0.80 -38.83 11.18 21.83 0.24 -38.58 16 19 Si 0.96 34.84 29.59 68.60 2.03 36.87 16 20 H -0.27 -9.29 7.11 99.48 0.71 -8.59 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 22 H -0.24 -7.99 7.11 99.48 0.71 -7.29 16 23 C 0.08 2.20 3.27 31.06 0.10 2.30 16 24 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 25 C -0.16 -4.92 5.57 31.86 0.18 -4.75 16 26 C -0.15 -3.77 7.16 32.05 0.23 -3.54 16 27 C 0.05 1.13 7.78 72.64 0.56 1.69 16 28 O -0.38 -10.19 10.37 -148.98 -1.55 -11.74 16 29 H 0.05 1.48 7.70 -2.39 -0.02 1.46 16 30 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 31 H 0.04 1.15 7.54 -2.38 -0.02 1.14 16 32 H 0.09 2.03 7.65 -2.39 -0.02 2.01 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.42 12.05 8.78 -96.74 -0.85 11.20 16 35 H 0.12 4.68 7.33 -2.91 -0.02 4.66 16 36 H 0.12 4.16 8.06 -2.91 -0.02 4.13 16 37 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.11 5.13 6.44 -2.91 -0.02 5.11 16 39 H 0.29 12.86 8.30 -92.71 -0.77 12.09 16 40 H 0.07 2.66 4.87 -2.39 -0.01 2.65 16 41 H 0.08 2.65 7.51 -2.39 -0.02 2.64 16 42 H 0.09 1.89 8.14 -2.38 -0.02 1.88 16 43 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -60.74 363.65 -0.58 -61.32 By element: Atomic # 1 Polarization: 45.35 SS G_CDS: 0.16 Total: 45.51 kcal Atomic # 6 Polarization: -77.52 SS G_CDS: 3.43 Total: -74.09 kcal Atomic # 7 Polarization: -74.90 SS G_CDS: -0.40 Total: -75.30 kcal Atomic # 8 Polarization: -103.63 SS G_CDS: -5.52 Total: -109.15 kcal Atomic # 14 Polarization: 34.84 SS G_CDS: 2.03 Total: 36.87 kcal Atomic # 16 Polarization: 115.11 SS G_CDS: -0.27 Total: 114.83 kcal Total: -60.74 -0.58 -61.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601378840.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.362 kcal (2) G-P(sol) polarization free energy of solvation -60.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds