Wall clock time and date at job start Tue Mar 31 2020 22:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46657 * 2 1 4 4 H 1.08994 * 109.47424 * 54.25307 * 3 2 1 5 5 N 1.46501 * 109.46713 * 294.25188 * 3 2 1 6 6 S 1.65593 * 119.99980 * 115.33999 * 5 3 2 7 7 O 1.42106 * 106.40356 * 314.49126 * 6 5 3 8 8 O 1.42101 * 106.40519 * 181.57003 * 6 5 3 9 9 C 1.76201 * 107.22098 * 68.02893 * 6 5 3 10 10 C 1.37637 * 120.13064 * 245.61468 * 9 6 5 11 11 C 1.38613 * 120.25217 * 179.97438 * 10 9 6 12 12 C 1.38658 * 120.49808 * 0.02562 * 11 10 9 13 13 C 1.37594 * 120.24942 * 359.97438 * 12 11 10 14 14 C 1.40699 * 120.12821 * 65.58428 * 9 6 5 15 15 C 1.41401 * 120.24184 * 359.75718 * 14 9 6 16 16 H 1.08004 * 119.99392 * 329.87535 * 15 14 9 17 17 C 1.39941 * 120.00241 * 149.88541 * 15 14 9 18 18 N 1.30821 * 119.99876 * 348.46945 * 17 15 14 19 19 Si 1.86799 * 120.00119 * 168.47074 * 17 15 14 20 20 H 1.48501 * 109.47146 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47236 * 119.99833 * 19 17 15 22 22 H 1.48497 * 109.47037 * 239.99758 * 19 17 15 23 23 C 1.53004 * 109.46648 * 174.25710 * 3 2 1 24 24 H 1.08991 * 110.27681 * 60.63400 * 23 3 2 25 25 C 1.54948 * 110.30377 * 182.82943 * 23 3 2 26 26 C 1.55313 * 100.93844 * 155.35845 * 25 23 3 27 27 C 1.54376 * 102.25154 * 325.86635 * 26 25 23 28 28 O 1.43240 * 107.59251 * 21.35330 * 27 26 25 29 29 H 1.08998 * 109.47343 * 304.86831 * 1 2 3 30 30 H 1.08996 * 109.46935 * 64.87222 * 1 2 3 31 31 H 1.08998 * 109.46896 * 184.86921 * 1 2 3 32 32 H 1.08993 * 109.47146 * 239.99446 * 2 1 3 33 33 H 1.09003 * 109.47007 * 119.99290 * 2 1 3 34 34 H 0.97006 * 119.99979 * 295.33432 * 5 3 2 35 35 H 1.08006 * 119.87134 * 359.97438 * 10 9 6 36 36 H 1.07998 * 119.74998 * 179.97438 * 11 10 9 37 37 H 1.07995 * 119.87360 * 180.02562 * 12 11 10 38 38 H 1.07997 * 120.12931 * 180.02562 * 13 12 11 39 39 H 0.97000 * 120.00568 * 180.02562 * 18 17 15 40 40 H 1.08995 * 111.12479 * 273.27110 * 25 23 3 41 41 H 1.08996 * 111.12903 * 37.44326 * 25 23 3 42 42 H 1.08997 * 110.84742 * 207.67738 * 26 25 23 43 43 H 1.08997 * 110.84647 * 84.05411 * 26 25 23 44 44 H 1.09006 * 109.83415 * 261.84510 * 27 26 25 45 45 H 1.08995 * 109.83377 * 140.87197 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5950 1.9853 0.8340 5 7 1.6677 2.0920 -1.2594 6 16 0.6153 3.3704 -1.2522 7 8 -0.4574 3.0024 -0.3959 8 8 0.4318 3.7468 -2.6102 9 6 1.4369 4.7182 -0.4692 10 6 0.9753 5.2044 0.7329 11 6 1.6200 6.2642 1.3514 12 6 2.7350 6.8467 0.7681 13 6 3.2141 6.3769 -0.4331 14 6 2.5679 5.3010 -1.0699 15 6 3.0546 4.8061 -2.3018 16 1 2.9274 3.7634 -2.5529 17 6 3.7013 5.6672 -3.1954 18 7 3.6598 6.9606 -3.0033 19 14 4.6236 4.9699 -4.6625 20 1 4.5206 3.4885 -4.6535 21 1 4.0316 5.5001 -5.9170 22 1 6.0524 5.3668 -4.5832 23 6 3.5632 1.4450 0.1444 24 1 4.0225 0.9148 -0.6898 25 6 4.0940 2.8989 0.2181 26 6 5.4306 2.6864 0.9800 27 6 5.0820 1.5248 1.9352 28 8 3.9468 0.8420 1.3904 29 1 -0.3634 0.5875 0.8431 30 1 -0.3633 0.4364 -0.9304 31 1 -0.3633 -1.0239 0.0872 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5137 0.8901 34 1 2.0379 1.7731 -2.0974 35 1 0.1074 4.7585 1.1959 36 1 1.2506 6.6396 2.2942 37 1 3.2298 7.6716 1.2590 38 1 4.0829 6.8318 -0.8855 39 1 4.1077 7.5576 -3.6229 40 1 4.2700 3.3038 -0.7785 41 1 3.4157 3.5365 0.7850 42 1 5.7041 3.5805 1.5402 43 1 6.2268 2.3985 0.2936 44 1 4.8383 1.9180 2.9222 45 1 5.9263 0.8392 2.0073 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601378841.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:24 Heat of formation + Delta-G solvation = -117.283426 kcal Electronic energy + Delta-G solvation = -29989.981129 eV Core-core repulsion = 26098.445672 eV Total energy + Delta-G solvation = -3891.535457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -39.41993 -37.67248 -36.44194 -35.92359 -34.83207 -33.92889 -31.97716 -31.10822 -30.25823 -29.63234 -29.21730 -25.63107 -25.11770 -21.99262 -21.69913 -21.21957 -20.98006 -20.53673 -18.78356 -17.77163 -17.01878 -16.52617 -16.13723 -15.82691 -15.36817 -15.07144 -14.62291 -14.39689 -14.23151 -13.91725 -13.45241 -13.31051 -13.15042 -12.95725 -12.79463 -12.22378 -12.07444 -11.95873 -11.61482 -11.43132 -11.35016 -11.31208 -11.21116 -11.13412 -11.05154 -10.97336 -10.82554 -10.67254 -10.62085 -10.52831 -10.52159 -10.36972 -9.93434 -9.51091 -9.48311 -9.27864 -8.76617 -8.06856 -7.62431 -7.07580 -4.81382 1.50693 2.28938 2.67678 2.93610 2.98329 3.05526 3.71319 3.72987 4.23631 4.37447 4.69389 4.79883 4.91730 5.15084 5.20877 5.26223 5.36562 5.39913 5.54446 5.59482 5.68385 5.74609 5.87022 5.91753 5.99499 6.02158 6.11372 6.19199 6.19734 6.24107 6.27453 6.36637 6.51341 6.63571 6.67998 6.69562 6.75438 6.89196 7.02834 7.22242 7.25456 7.44471 7.52025 7.63653 7.75624 7.83880 8.22715 8.45711 8.58982 9.86331 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009708 B = 0.006321 C = 0.005911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2883.613409 B = 4428.542401 C = 4736.046452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.166 3.834 4 H 0.094 0.906 5 N -1.112 6.112 6 S 2.697 3.303 7 O -0.991 6.991 8 O -0.964 6.964 9 C -0.773 4.773 10 C -0.003 4.003 11 C -0.248 4.248 12 C -0.076 4.076 13 C -0.157 4.157 14 C 0.196 3.804 15 C -0.450 4.450 16 H 0.087 0.913 17 C 0.082 3.918 18 N -0.776 5.776 19 Si 0.911 3.089 20 H -0.254 1.254 21 H -0.269 1.269 22 H -0.270 1.270 23 C 0.072 3.928 24 H 0.071 0.929 25 C -0.156 4.156 26 C -0.155 4.155 27 C 0.053 3.947 28 O -0.381 6.381 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.411 0.589 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.287 0.713 40 H 0.107 0.893 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.306 -8.024 4.336 10.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C 0.057 3.943 4 H 0.112 0.888 5 N -0.868 5.868 6 S 2.794 3.206 7 O -0.982 6.982 8 O -0.955 6.955 9 C -0.868 4.868 10 C -0.023 4.023 11 C -0.268 4.268 12 C -0.095 4.095 13 C -0.176 4.176 14 C 0.191 3.809 15 C -0.478 4.478 16 H 0.104 0.896 17 C -0.139 4.139 18 N -0.400 5.400 19 Si 0.735 3.265 20 H -0.178 1.178 21 H -0.193 1.193 22 H -0.195 1.195 23 C 0.013 3.987 24 H 0.089 0.911 25 C -0.194 4.194 26 C -0.193 4.193 27 C -0.024 4.024 28 O -0.300 6.300 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.244 0.756 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.083 0.917 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.327 -7.961 4.141 9.571 hybrid contribution 1.382 0.494 -0.734 1.641 sum 4.709 -7.467 3.407 9.462 Atomic orbital electron populations 1.21760 0.95231 1.00695 1.03014 1.21852 0.96520 0.95900 1.02406 1.20638 0.92951 0.94413 0.86250 0.88802 1.55765 1.66982 1.50641 1.13402 1.01249 0.72914 0.72877 0.73540 1.93467 1.52028 1.83470 1.69186 1.93549 1.85089 1.82370 1.34477 1.29944 1.16177 1.27377 1.13347 1.20263 0.95843 0.94029 0.92175 1.20490 1.01708 1.02767 1.01829 1.20895 0.95651 0.97280 0.95636 1.21440 1.01685 1.00118 0.94395 1.16918 0.85694 0.88579 0.89667 1.19812 1.30935 0.97302 0.99787 0.89558 1.25895 0.94009 0.94370 0.99606 1.69777 1.31672 1.03520 1.34991 0.86180 0.78986 0.80979 0.80385 1.17771 1.19346 1.19534 1.23339 0.94900 0.93657 0.86758 0.91121 1.23582 0.95843 0.96062 1.03877 1.23092 0.98932 0.98668 0.98608 1.23079 0.88506 0.93627 0.97156 1.88330 1.48126 1.56347 1.37156 0.91826 0.92789 0.93414 0.91939 0.90526 0.75573 0.87448 0.88820 0.88953 0.86084 0.90199 0.87509 0.89297 0.90257 0.91064 0.91698 0.92077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.03 37.16 0.34 -1.80 16 2 C -0.13 -1.73 5.55 -26.73 -0.15 -1.87 16 3 C 0.17 2.54 2.04 -67.92 -0.14 2.41 16 4 H 0.09 1.56 7.66 -51.93 -0.40 1.16 16 5 N -1.11 -18.52 3.87 -4.89 -0.02 -18.54 16 6 S 2.70 56.41 4.86 -107.50 -0.52 55.89 16 7 O -0.99 -21.42 15.41 -57.17 -0.88 -22.30 16 8 O -0.96 -23.34 16.56 -57.17 -0.95 -24.29 16 9 C -0.77 -17.25 4.81 -38.87 -0.19 -17.43 16 10 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 11 C -0.25 -5.13 10.05 -39.29 -0.39 -5.53 16 12 C -0.08 -1.60 10.02 -39.66 -0.40 -2.00 16 13 C -0.16 -3.59 8.65 -38.88 -0.34 -3.93 16 14 C 0.20 4.56 3.85 -106.82 -0.41 4.14 16 15 C -0.45 -10.38 6.01 -37.74 -0.23 -10.61 16 16 H 0.09 1.86 5.69 -52.48 -0.30 1.56 16 17 C 0.08 1.88 5.23 -17.34 -0.09 1.79 16 18 N -0.78 -18.32 10.99 55.55 0.61 -17.71 16 19 Si 0.91 17.25 29.58 -169.99 -5.03 12.22 16 20 H -0.25 -4.65 7.11 56.52 0.40 -4.25 16 21 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 22 H -0.27 -4.92 7.11 56.52 0.40 -4.52 16 23 C 0.07 1.06 3.16 -25.70 -0.08 0.98 16 24 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 25 C -0.16 -2.49 5.20 -24.48 -0.13 -2.62 16 26 C -0.16 -2.06 7.02 -24.78 -0.17 -2.23 16 27 C 0.05 0.67 7.79 37.88 0.30 0.97 16 28 O -0.38 -5.60 10.38 -35.23 -0.37 -5.96 16 29 H 0.06 0.97 8.13 -51.93 -0.42 0.55 16 30 H 0.05 0.82 7.60 -51.93 -0.39 0.43 16 31 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.00 7.60 -51.93 -0.39 0.61 16 34 H 0.41 6.08 8.61 -34.47 -0.30 5.79 16 35 H 0.11 2.17 7.32 -52.48 -0.38 1.78 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.12 2.83 6.37 -52.49 -0.33 2.50 16 39 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 40 H 0.11 1.85 5.92 -51.93 -0.31 1.54 16 41 H 0.09 1.60 6.64 -51.93 -0.34 1.25 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 363.89 15.07 5.48 5.48 Total: -1.00 -28.08 363.89 -10.65 -38.73 By element: Atomic # 1 Polarization: 21.17 SS G_CDS: -6.51 Total: 14.65 kcal Atomic # 6 Polarization: -35.71 SS G_CDS: -2.46 Total: -38.17 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.59 Total: -36.25 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -2.19 Total: -52.55 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Atomic # 16 Polarization: 56.41 SS G_CDS: -0.52 Total: 55.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.08 -10.65 -38.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601378841.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.553 kcal (2) G-P(sol) polarization free energy of solvation -28.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds