Wall clock time and date at job start Tue Mar 31 2020 22:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46573 * 2 1 4 4 H 1.09004 * 109.46918 * 302.57382 * 3 2 1 5 5 N 1.46501 * 109.47386 * 62.58018 * 3 2 1 6 6 S 1.65600 * 119.99425 * 255.02735 * 5 3 2 7 7 O 1.42111 * 106.39713 * 177.72640 * 6 5 3 8 8 O 1.42098 * 106.40560 * 44.80803 * 6 5 3 9 9 C 1.76198 * 107.21913 * 291.26439 * 6 5 3 10 10 C 1.37640 * 120.12249 * 112.61122 * 9 6 5 11 11 C 1.38618 * 120.24357 * 179.97438 * 10 9 6 12 12 C 1.38653 * 120.50378 * 359.97438 * 11 10 9 13 13 C 1.37603 * 120.24672 * 359.97438 * 12 11 10 14 14 C 1.40697 * 120.13158 * 292.58377 * 9 6 5 15 15 C 1.41395 * 120.23776 * 0.02562 * 14 9 6 16 16 H 1.07997 * 120.00825 * 328.32344 * 15 14 9 17 17 C 1.39960 * 119.99613 * 148.32289 * 15 14 9 18 18 N 1.30822 * 119.99804 * 169.67600 * 17 15 14 19 19 Si 1.86794 * 119.99612 * 349.67423 * 17 15 14 20 20 H 1.48501 * 109.47012 * 88.64518 * 19 17 15 21 21 H 1.48506 * 109.47053 * 208.64071 * 19 17 15 22 22 H 1.48498 * 109.47846 * 328.64394 * 19 17 15 23 23 C 1.53005 * 109.46701 * 182.58124 * 3 2 1 24 24 H 1.08992 * 109.87327 * 63.99198 * 23 3 2 25 25 C 1.54103 * 109.87494 * 185.00016 * 23 3 2 26 26 C 1.54813 * 104.18824 * 121.45242 * 25 23 3 27 27 C 1.54993 * 102.09296 * 20.87558 * 26 25 23 28 28 O 1.43744 * 109.87455 * 302.82586 * 23 3 2 29 29 H 1.08999 * 109.47472 * 54.07799 * 1 2 3 30 30 H 1.09005 * 109.47010 * 174.07174 * 1 2 3 31 31 H 1.09001 * 109.47620 * 294.07570 * 1 2 3 32 32 H 1.09000 * 109.47065 * 240.00225 * 2 1 3 33 33 H 1.08999 * 109.47472 * 119.99412 * 2 1 3 34 34 H 0.96990 * 120.00187 * 75.03078 * 5 3 2 35 35 H 1.07999 * 119.88296 * 359.97438 * 10 9 6 36 36 H 1.08000 * 119.74930 * 179.97438 * 11 10 9 37 37 H 1.08004 * 119.87717 * 179.72365 * 12 11 10 38 38 H 1.07999 * 120.12199 * 179.97438 * 13 12 11 39 39 H 0.96996 * 119.99416 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.48647 * 240.12804 * 25 23 3 41 41 H 1.08997 * 110.49068 * 2.64260 * 25 23 3 42 42 H 1.08996 * 110.90750 * 139.07558 * 26 25 23 43 43 H 1.09007 * 110.90445 * 262.67983 * 26 25 23 44 44 H 1.09004 * 110.61768 * 81.47878 * 27 26 25 45 45 H 1.09000 * 110.62231 * 204.31828 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6392 1.9695 -0.8661 5 7 1.6029 2.1150 1.2260 6 16 0.3665 3.2153 1.1711 7 8 0.1492 3.6417 2.5092 8 8 -0.6506 2.6363 0.3652 9 6 0.9586 4.6219 0.2906 10 6 0.4337 4.9363 -0.9423 11 6 0.8974 6.0427 -1.6370 12 6 1.8927 6.8447 -1.0998 13 6 2.4312 6.5498 0.1317 14 6 1.9694 5.4283 0.8453 15 6 2.5160 5.1149 2.1111 16 1 1.9010 4.6433 2.8632 17 6 3.8542 5.4159 2.3893 18 7 4.3065 5.3156 3.6128 19 14 4.9944 5.9606 1.0137 20 1 4.9221 7.4365 0.8661 21 1 6.3879 5.5635 1.3393 22 1 4.5800 5.3151 -0.2578 23 6 3.5685 1.4431 -0.0650 24 1 3.8994 1.0077 -1.0077 25 6 4.0977 2.8850 0.0606 26 6 5.0169 2.8447 1.3057 27 6 5.3410 1.3334 1.4212 28 8 4.1048 0.6935 1.0381 29 1 -0.3634 0.6029 -0.8322 30 1 -0.3633 -1.0222 -0.1061 31 1 -0.3634 0.4192 0.9382 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.0378 1.9159 2.0698 35 1 -0.3422 4.3189 -1.3701 36 1 0.4801 6.2818 -2.6040 37 1 2.2496 7.7016 -1.6518 38 1 3.2068 7.1756 0.5480 39 1 5.2340 5.5238 3.8055 40 1 4.6684 3.1605 -0.8262 41 1 3.2738 3.5818 0.2146 42 1 5.9241 3.4254 1.1384 43 1 4.4883 3.1979 2.1911 44 1 6.1434 1.0594 0.7362 45 1 5.6081 1.0753 2.4460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601378842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:28 Heat of formation + Delta-G solvation = -101.120301 kcal Electronic energy + Delta-G solvation = -30716.908920 eV Core-core repulsion = 26826.074349 eV Total energy + Delta-G solvation = -3890.834571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.48187 -37.97749 -36.50199 -35.67806 -34.89797 -34.04612 -31.80700 -31.03423 -30.76371 -30.19489 -29.20816 -25.50517 -25.08663 -22.26505 -22.13279 -21.27280 -20.71151 -20.45602 -18.75960 -17.80636 -17.16221 -16.45024 -16.33104 -15.99552 -15.36628 -15.14439 -14.75314 -14.30631 -14.18406 -14.01027 -13.64922 -13.48397 -13.33354 -13.12900 -12.78753 -12.33638 -12.22800 -12.06645 -11.86953 -11.53218 -11.44322 -11.35361 -11.22775 -11.07169 -10.90634 -10.81928 -10.68357 -10.62319 -10.52684 -10.39788 -10.37403 -10.18253 -9.91875 -9.54707 -9.42483 -9.26135 -8.73615 -8.28728 -7.88729 -7.23822 -4.94994 1.47867 2.00523 2.43976 2.87966 2.93167 3.02645 3.65946 3.88575 4.12020 4.18033 4.65988 4.86708 5.02569 5.06070 5.25801 5.34110 5.39220 5.43477 5.51498 5.53560 5.66684 5.76558 5.83468 5.87059 5.95891 5.98599 6.00719 6.13666 6.21348 6.27665 6.29650 6.32845 6.37443 6.54983 6.64039 6.73533 6.79172 6.83404 6.89511 7.01064 7.17537 7.20669 7.35851 7.48804 7.73302 7.76569 8.12415 8.25296 8.47079 9.72885 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010480 B = 0.008415 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.109178 B = 3326.599486 C = 4621.356399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.130 4.130 3 C 0.166 3.834 4 H 0.093 0.907 5 N -1.101 6.101 6 S 2.702 3.298 7 O -0.969 6.969 8 O -0.988 6.988 9 C -0.774 4.774 10 C 0.017 3.983 11 C -0.258 4.258 12 C -0.043 4.043 13 C -0.241 4.241 14 C 0.167 3.833 15 C -0.455 4.455 16 H 0.133 0.867 17 C 0.093 3.907 18 N -0.778 5.778 19 Si 0.902 3.098 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.232 1.232 23 C 0.073 3.927 24 H 0.070 0.930 25 C -0.164 4.164 26 C -0.171 4.171 27 C 0.051 3.949 28 O -0.367 6.367 29 H 0.066 0.934 30 H 0.043 0.957 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.419 0.581 35 H 0.115 0.885 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.107 0.893 39 H 0.291 0.709 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.051 0.949 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.277 -6.174 -6.720 9.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.169 4.169 3 C 0.057 3.943 4 H 0.111 0.889 5 N -0.858 5.858 6 S 2.798 3.202 7 O -0.959 6.959 8 O -0.978 6.978 9 C -0.868 4.868 10 C -0.003 4.003 11 C -0.278 4.278 12 C -0.061 4.061 13 C -0.260 4.260 14 C 0.162 3.838 15 C -0.482 4.482 16 H 0.150 0.850 17 C -0.129 4.129 18 N -0.400 5.400 19 Si 0.730 3.270 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.155 1.155 23 C 0.014 3.986 24 H 0.088 0.912 25 C -0.202 4.202 26 C -0.208 4.208 27 C -0.026 4.026 28 O -0.286 6.286 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.253 0.747 35 H 0.133 0.867 36 H 0.119 0.881 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.085 0.915 43 H 0.125 0.875 44 H 0.069 0.931 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.429 -6.491 -6.155 9.269 hybrid contribution 1.679 1.215 -0.660 2.175 sum 4.108 -5.276 -6.815 9.547 Atomic orbital electron populations 1.21831 0.94889 1.00421 1.03477 1.21855 0.96625 0.95999 1.02436 1.20852 0.92382 0.93777 0.87259 0.88919 1.55409 1.56711 1.57981 1.15675 1.01126 0.72544 0.73073 0.73503 1.93523 1.84389 1.81925 1.36106 1.93484 1.55458 1.77471 1.71431 1.30025 1.21724 1.23787 1.11238 1.20424 0.93993 0.94401 0.91443 1.20516 1.04907 1.00890 1.01470 1.20836 0.94393 0.96604 0.94289 1.21299 1.06173 1.00534 0.98041 1.17065 0.87702 0.88130 0.90944 1.20438 0.96672 1.33255 0.97861 0.84970 1.26204 0.99227 0.91139 0.96365 1.69665 1.17778 1.32638 1.19927 0.86758 0.77621 0.79201 0.83448 1.20428 1.21656 1.15478 1.23061 0.93706 0.91689 0.90151 0.91245 1.23299 1.01693 0.97477 0.97686 1.23411 0.99875 0.96468 1.01069 1.23469 0.87067 0.91905 1.00129 1.88815 1.37059 1.52013 1.50704 0.91477 0.93778 0.92619 0.91731 0.90888 0.74661 0.86743 0.88127 0.88362 0.87566 0.89806 0.91749 0.86993 0.91502 0.87503 0.93072 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 8.34 37.16 0.31 -1.87 16 2 C -0.13 -1.78 5.42 -26.73 -0.14 -1.93 16 3 C 0.17 2.54 2.07 -67.92 -0.14 2.40 16 4 H 0.09 1.39 7.87 -51.93 -0.41 0.98 16 5 N -1.10 -19.35 3.94 -4.88 -0.02 -19.37 16 6 S 2.70 55.56 4.88 -107.50 -0.53 55.04 16 7 O -0.97 -23.35 15.51 -57.17 -0.89 -24.24 16 8 O -0.99 -20.23 13.28 -57.17 -0.76 -20.99 16 9 C -0.77 -16.71 5.15 -38.87 -0.20 -16.91 16 10 C 0.02 0.34 9.54 -39.66 -0.38 -0.03 16 11 C -0.26 -4.94 10.05 -39.29 -0.39 -5.34 16 12 C -0.04 -0.84 10.02 -39.66 -0.40 -1.24 16 13 C -0.24 -5.32 7.05 -38.87 -0.27 -5.60 16 14 C 0.17 3.83 3.63 -106.83 -0.39 3.44 16 15 C -0.46 -10.94 7.95 -37.74 -0.30 -11.24 16 16 H 0.13 3.49 5.57 -52.49 -0.29 3.20 16 17 C 0.09 2.13 3.35 -17.34 -0.06 2.07 16 18 N -0.78 -18.10 13.73 55.55 0.76 -17.34 16 19 Si 0.90 18.36 19.17 -169.99 -3.26 15.10 16 20 H -0.28 -5.73 6.51 56.52 0.37 -5.37 16 21 H -0.29 -5.60 6.93 56.52 0.39 -5.20 16 22 H -0.23 -4.59 5.37 56.52 0.30 -4.29 16 23 C 0.07 1.09 3.29 -26.15 -0.09 1.00 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 25 C -0.16 -2.75 4.39 -25.20 -0.11 -2.86 16 26 C -0.17 -2.85 4.85 -24.72 -0.12 -2.97 16 27 C 0.05 0.72 7.72 38.21 0.29 1.02 16 28 O -0.37 -5.60 10.16 -35.23 -0.36 -5.96 16 29 H 0.07 1.03 7.37 -51.93 -0.38 0.65 16 30 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.90 6.71 -51.93 -0.35 0.55 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.02 7.71 -51.93 -0.40 0.62 16 34 H 0.42 7.33 8.65 -34.47 -0.30 7.03 16 35 H 0.11 2.08 7.32 -52.49 -0.38 1.70 16 36 H 0.10 1.66 8.06 -52.49 -0.42 1.23 16 37 H 0.10 1.66 8.06 -52.48 -0.42 1.24 16 38 H 0.11 2.34 4.23 -52.49 -0.22 2.11 16 39 H 0.29 6.13 8.30 -40.82 -0.34 5.79 16 40 H 0.06 1.00 7.91 -51.93 -0.41 0.59 16 41 H 0.11 2.11 2.76 -51.93 -0.14 1.97 16 42 H 0.07 1.08 6.29 -51.93 -0.33 0.76 16 43 H 0.11 2.04 5.72 -51.93 -0.30 1.74 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -27.03 335.52 -8.53 -35.56 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -6.15 Total: 17.20 kcal Atomic # 6 Polarization: -37.67 SS G_CDS: -2.39 Total: -40.06 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: 0.74 Total: -36.70 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -2.00 Total: -51.18 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -3.26 Total: 15.10 kcal Atomic # 16 Polarization: 55.56 SS G_CDS: -0.53 Total: 55.04 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -27.03 -8.53 -35.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601378842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.560 kcal (2) G-P(sol) polarization free energy of solvation -27.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds