Wall clock time and date at job start Tue Mar 31 2020 22:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46573 * 2 1 4 4 H 1.09004 * 109.46918 * 302.57382 * 3 2 1 5 5 N 1.46501 * 109.47386 * 62.58018 * 3 2 1 6 6 S 1.65600 * 119.99425 * 255.02735 * 5 3 2 7 7 O 1.42111 * 106.39713 * 177.72640 * 6 5 3 8 8 O 1.42098 * 106.40560 * 44.80803 * 6 5 3 9 9 C 1.76198 * 107.21913 * 291.26439 * 6 5 3 10 10 C 1.37640 * 120.12249 * 112.61122 * 9 6 5 11 11 C 1.38618 * 120.24357 * 179.97438 * 10 9 6 12 12 C 1.38653 * 120.50378 * 359.97438 * 11 10 9 13 13 C 1.37603 * 120.24672 * 359.97438 * 12 11 10 14 14 C 1.40697 * 120.13158 * 292.58377 * 9 6 5 15 15 C 1.41395 * 120.23776 * 0.02562 * 14 9 6 16 16 H 1.07997 * 120.00825 * 328.32344 * 15 14 9 17 17 C 1.39960 * 119.99613 * 148.32289 * 15 14 9 18 18 N 1.30822 * 119.99804 * 169.67600 * 17 15 14 19 19 Si 1.86794 * 119.99612 * 349.67423 * 17 15 14 20 20 H 1.48501 * 109.47012 * 88.64518 * 19 17 15 21 21 H 1.48506 * 109.47053 * 208.64071 * 19 17 15 22 22 H 1.48498 * 109.47846 * 328.64394 * 19 17 15 23 23 C 1.53005 * 109.46701 * 182.58124 * 3 2 1 24 24 H 1.08992 * 109.87327 * 63.99198 * 23 3 2 25 25 C 1.54103 * 109.87494 * 185.00016 * 23 3 2 26 26 C 1.54813 * 104.18824 * 121.45242 * 25 23 3 27 27 C 1.54993 * 102.09296 * 20.87558 * 26 25 23 28 28 O 1.43744 * 109.87455 * 302.82586 * 23 3 2 29 29 H 1.08999 * 109.47472 * 54.07799 * 1 2 3 30 30 H 1.09005 * 109.47010 * 174.07174 * 1 2 3 31 31 H 1.09001 * 109.47620 * 294.07570 * 1 2 3 32 32 H 1.09000 * 109.47065 * 240.00225 * 2 1 3 33 33 H 1.08999 * 109.47472 * 119.99412 * 2 1 3 34 34 H 0.96990 * 120.00187 * 75.03078 * 5 3 2 35 35 H 1.07999 * 119.88296 * 359.97438 * 10 9 6 36 36 H 1.08000 * 119.74930 * 179.97438 * 11 10 9 37 37 H 1.08004 * 119.87717 * 179.72365 * 12 11 10 38 38 H 1.07999 * 120.12199 * 179.97438 * 13 12 11 39 39 H 0.96996 * 119.99416 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.48647 * 240.12804 * 25 23 3 41 41 H 1.08997 * 110.49068 * 2.64260 * 25 23 3 42 42 H 1.08996 * 110.90750 * 139.07558 * 26 25 23 43 43 H 1.09007 * 110.90445 * 262.67983 * 26 25 23 44 44 H 1.09004 * 110.61768 * 81.47878 * 27 26 25 45 45 H 1.09000 * 110.62231 * 204.31828 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0398 1.4426 0.0000 4 1 1.6392 1.9695 -0.8661 5 7 1.6029 2.1150 1.2260 6 16 0.3665 3.2153 1.1711 7 8 0.1492 3.6417 2.5092 8 8 -0.6506 2.6363 0.3652 9 6 0.9586 4.6219 0.2906 10 6 0.4337 4.9363 -0.9423 11 6 0.8974 6.0427 -1.6370 12 6 1.8927 6.8447 -1.0998 13 6 2.4312 6.5498 0.1317 14 6 1.9694 5.4283 0.8453 15 6 2.5160 5.1149 2.1111 16 1 1.9010 4.6433 2.8632 17 6 3.8542 5.4159 2.3893 18 7 4.3065 5.3156 3.6128 19 14 4.9944 5.9606 1.0137 20 1 4.9221 7.4365 0.8661 21 1 6.3879 5.5635 1.3393 22 1 4.5800 5.3151 -0.2578 23 6 3.5685 1.4431 -0.0650 24 1 3.8994 1.0077 -1.0077 25 6 4.0977 2.8850 0.0606 26 6 5.0169 2.8447 1.3057 27 6 5.3410 1.3334 1.4212 28 8 4.1048 0.6935 1.0381 29 1 -0.3634 0.6029 -0.8322 30 1 -0.3633 -1.0222 -0.1061 31 1 -0.3634 0.4192 0.9382 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 2.0378 1.9159 2.0698 35 1 -0.3422 4.3189 -1.3701 36 1 0.4801 6.2818 -2.6040 37 1 2.2496 7.7016 -1.6518 38 1 3.2068 7.1756 0.5480 39 1 5.2340 5.5238 3.8055 40 1 4.6684 3.1605 -0.8262 41 1 3.2738 3.5818 0.2146 42 1 5.9241 3.4254 1.1384 43 1 4.4883 3.1979 2.1911 44 1 6.1434 1.0594 0.7362 45 1 5.6081 1.0753 2.4460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601378842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:27 Heat of formation + Delta-G solvation = -120.480146 kcal Electronic energy + Delta-G solvation = -30717.748426 eV Core-core repulsion = 26826.074349 eV Total energy + Delta-G solvation = -3891.674077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.68741 -39.59878 -38.13097 -37.01419 -36.60836 -35.71534 -33.06785 -32.49034 -32.22396 -31.80916 -30.41619 -27.17176 -26.30611 -23.76926 -23.42196 -22.90825 -21.92525 -21.68876 -20.30313 -19.51131 -18.71497 -18.02878 -17.65718 -17.33903 -16.90976 -16.42598 -16.22284 -15.87047 -15.55616 -15.52114 -15.12188 -14.90865 -14.74543 -14.42114 -14.30072 -13.86569 -13.59169 -13.43605 -13.18460 -13.12428 -13.02599 -12.94240 -12.82505 -12.56091 -12.41420 -12.18201 -12.09254 -12.02140 -11.90241 -11.85335 -11.59011 -11.54603 -11.38819 -11.16425 -10.89247 -10.59762 -10.08775 -9.89171 -9.53825 -8.93703 -6.70577 -0.12793 0.36478 0.79935 1.23818 1.30793 1.41801 2.02486 2.36451 2.53275 2.93061 3.05137 3.37482 3.66196 3.81735 3.84038 4.09011 4.14991 4.21930 4.27640 4.30460 4.31939 4.44370 4.49743 4.61122 4.65833 4.71452 4.79080 4.82147 4.87690 4.93493 4.98986 5.11088 5.13356 5.22792 5.23944 5.33869 5.39243 5.50093 5.53563 5.59117 5.66780 5.72592 5.85783 6.05148 6.11663 6.27877 6.36820 6.55785 6.72212 8.08793 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010480 B = 0.008415 C = 0.006057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2671.109178 B = 3326.599486 C = 4621.356399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C 0.156 3.844 4 H 0.097 0.903 5 N -1.093 6.093 6 S 2.714 3.286 7 O -1.013 7.013 8 O -0.989 6.989 9 C -0.782 4.782 10 C 0.006 3.994 11 C -0.246 4.246 12 C -0.039 4.039 13 C -0.267 4.267 14 C 0.160 3.840 15 C -0.479 4.479 16 H 0.096 0.904 17 C 0.077 3.923 18 N -0.816 5.816 19 Si 0.939 3.061 20 H -0.283 1.283 21 H -0.277 1.277 22 H -0.222 1.222 23 C 0.079 3.921 24 H 0.101 0.899 25 C -0.172 4.172 26 C -0.175 4.175 27 C 0.055 3.945 28 O -0.376 6.376 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.093 0.907 33 H 0.069 0.931 34 H 0.417 0.583 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.133 0.867 38 H 0.102 0.898 39 H 0.297 0.703 40 H 0.077 0.923 41 H 0.090 0.910 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.010 -6.920 -10.042 12.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C 0.049 3.951 4 H 0.115 0.885 5 N -0.851 5.851 6 S 2.810 3.190 7 O -1.003 7.003 8 O -0.979 6.979 9 C -0.875 4.875 10 C -0.013 4.013 11 C -0.266 4.266 12 C -0.058 4.058 13 C -0.286 4.286 14 C 0.155 3.845 15 C -0.507 4.507 16 H 0.114 0.886 17 C -0.143 4.143 18 N -0.439 5.439 19 Si 0.765 3.235 20 H -0.211 1.211 21 H -0.204 1.204 22 H -0.144 1.144 23 C 0.020 3.980 24 H 0.119 0.881 25 C -0.210 4.210 26 C -0.212 4.212 27 C -0.021 4.021 28 O -0.295 6.295 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.252 0.748 35 H 0.151 0.849 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.120 0.880 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.109 0.891 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.096 0.904 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 3.151 -7.244 -9.484 12.343 hybrid contribution 1.318 1.443 0.273 1.973 sum 4.469 -5.801 -9.212 11.768 Atomic orbital electron populations 1.21835 0.95718 1.01419 1.01823 1.21818 0.95775 0.94912 1.03666 1.21174 0.93228 0.94588 0.86126 0.88477 1.55153 1.56107 1.57233 1.16632 1.00598 0.72930 0.73093 0.72423 1.93469 1.85424 1.82844 1.38584 1.93473 1.55970 1.77387 1.71112 1.30203 1.21271 1.24100 1.11926 1.20770 0.94372 0.95219 0.90956 1.20987 1.03644 0.99490 1.02480 1.21256 0.93675 0.97401 0.93428 1.21410 1.07163 1.00601 0.99416 1.17146 0.88066 0.88592 0.90698 1.20199 0.97236 1.35122 0.98097 0.88605 1.26580 0.99525 0.90588 0.97582 1.69687 1.18508 1.34470 1.21243 0.86187 0.76912 0.78343 0.82104 1.21146 1.20361 1.14423 1.23095 0.92949 0.90736 0.91244 0.88139 1.23336 1.01239 0.98385 0.98041 1.23345 0.99604 0.98328 0.99948 1.23539 0.87318 0.89926 1.01320 1.88802 1.37666 1.51966 1.51101 0.92225 0.91659 0.94979 0.88832 0.91183 0.74802 0.84904 0.84455 0.84907 0.88007 0.89155 0.90482 0.89117 0.91335 0.90520 0.90426 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.18 8.34 71.98 0.60 -3.57 16 2 C -0.12 -3.08 5.42 30.59 0.17 -2.91 16 3 C 0.16 4.53 2.07 44.99 0.09 4.63 16 4 H 0.10 2.72 7.87 -2.38 -0.02 2.70 16 5 N -1.09 -38.81 3.94 -169.37 -0.67 -39.47 16 6 S 2.71 113.93 4.88 -56.49 -0.28 113.65 16 7 O -1.01 -51.53 15.51 -128.00 -1.98 -53.51 16 8 O -0.99 -40.35 13.28 -128.00 -1.70 -42.05 16 9 C -0.78 -33.55 5.15 22.73 0.12 -33.44 16 10 C 0.01 0.24 9.54 22.22 0.21 0.46 16 11 C -0.25 -8.52 10.05 22.46 0.23 -8.30 16 12 C -0.04 -1.43 10.02 22.22 0.22 -1.21 16 13 C -0.27 -11.50 7.05 22.73 0.16 -11.34 16 14 C 0.16 7.40 3.63 -21.29 -0.08 7.32 16 15 C -0.48 -24.03 7.95 23.46 0.19 -23.84 16 16 H 0.10 5.45 5.57 -2.91 -0.02 5.43 16 17 C 0.08 3.61 3.35 85.26 0.29 3.90 16 18 N -0.82 -39.73 13.73 21.83 0.30 -39.43 16 19 Si 0.94 37.55 19.17 68.60 1.32 38.87 16 20 H -0.28 -11.51 6.51 99.48 0.65 -10.86 16 21 H -0.28 -10.30 6.93 99.48 0.69 -9.61 16 22 H -0.22 -8.40 5.37 99.48 0.53 -7.87 16 23 C 0.08 2.14 3.29 30.97 0.10 2.25 16 24 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 25 C -0.17 -5.50 4.39 31.59 0.14 -5.36 16 26 C -0.17 -5.70 4.85 31.90 0.15 -5.54 16 27 C 0.06 1.47 7.72 72.66 0.56 2.03 16 28 O -0.38 -10.73 10.16 -148.98 -1.51 -12.24 16 29 H 0.06 1.73 7.37 -2.39 -0.02 1.71 16 30 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 31 H 0.03 1.02 6.71 -2.39 -0.02 1.00 16 32 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.07 1.82 7.71 -2.39 -0.02 1.80 16 34 H 0.42 15.24 8.65 -96.75 -0.84 14.40 16 35 H 0.13 4.49 7.32 -2.91 -0.02 4.47 16 36 H 0.14 3.77 8.06 -2.91 -0.02 3.74 16 37 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 38 H 0.10 4.43 4.23 -2.91 -0.01 4.42 16 39 H 0.30 13.05 8.30 -92.71 -0.77 12.28 16 40 H 0.08 2.20 7.91 -2.39 -0.02 2.19 16 41 H 0.09 3.35 2.76 -2.39 -0.01 3.34 16 42 H 0.07 2.15 6.29 -2.39 -0.02 2.14 16 43 H 0.08 3.01 5.72 -2.38 -0.01 3.00 16 44 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 Total: -1.00 -60.08 335.52 -1.43 -61.51 By element: Atomic # 1 Polarization: 47.66 SS G_CDS: -0.05 Total: 47.60 kcal Atomic # 6 Polarization: -78.08 SS G_CDS: 3.15 Total: -74.93 kcal Atomic # 7 Polarization: -78.53 SS G_CDS: -0.37 Total: -78.90 kcal Atomic # 8 Polarization: -102.61 SS G_CDS: -5.20 Total: -107.80 kcal Atomic # 14 Polarization: 37.55 SS G_CDS: 1.32 Total: 38.87 kcal Atomic # 16 Polarization: 113.93 SS G_CDS: -0.28 Total: 113.65 kcal Total: -60.08 -1.43 -61.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601378842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.967 kcal (2) G-P(sol) polarization free energy of solvation -60.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds