Wall clock time and date at job start Tue Mar 31 2020 23:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.49148 * 2 1 4 4 C 1.53094 * 109.47958 * 120.02574 * 2 1 3 5 5 C 1.53176 * 109.16069 * 62.37570 * 4 2 1 6 6 N 1.46502 * 109.54473 * 176.84475 * 5 4 2 7 7 S 1.65600 * 120.00064 * 142.60809 * 6 5 4 8 8 O 1.42100 * 106.40382 * 310.96872 * 7 6 5 9 9 O 1.42099 * 106.40230 * 178.04120 * 7 6 5 10 10 C 1.76205 * 107.21652 * 64.50522 * 7 6 5 11 11 C 1.37636 * 120.13080 * 243.41153 * 10 7 6 12 12 C 1.38607 * 120.24916 * 179.97438 * 11 10 7 13 13 C 1.38651 * 120.50427 * 359.97438 * 12 11 10 14 14 C 1.37597 * 120.24761 * 359.73918 * 13 12 11 15 15 C 1.40702 * 120.12576 * 63.38551 * 10 7 6 16 16 C 1.41391 * 120.24503 * 0.02562 * 15 10 7 17 17 H 1.08000 * 120.00244 * 331.55910 * 16 15 10 18 18 C 1.39945 * 120.00026 * 151.55833 * 16 15 10 19 19 N 1.30825 * 120.00212 * 347.82265 * 18 16 15 20 20 Si 1.86803 * 120.00166 * 167.82419 * 18 16 15 21 21 H 1.48501 * 109.46966 * 5.01028 * 20 18 16 22 22 H 1.48506 * 109.47137 * 125.00912 * 20 18 16 23 23 H 1.48496 * 109.47248 * 245.01018 * 20 18 16 24 24 C 1.53180 * 109.11061 * 56.93872 * 5 4 2 25 25 C 1.53108 * 109.15323 * 303.14929 * 24 5 4 26 26 H 1.09006 * 109.41805 * 297.48958 * 25 24 5 27 27 C 1.52998 * 109.48397 * 177.50330 * 25 24 5 28 28 O 1.42898 * 109.48263 * 239.96949 * 2 1 3 29 29 H 1.09003 * 109.47442 * 304.50539 * 1 2 3 30 30 H 1.09002 * 109.47457 * 64.50603 * 1 2 3 31 31 H 1.09008 * 109.47547 * 184.50379 * 1 2 3 32 32 H 1.08999 * 109.52324 * 302.47184 * 4 2 1 33 33 H 1.08998 * 109.52408 * 182.28200 * 4 2 1 34 34 H 1.08998 * 109.54357 * 297.02404 * 5 4 2 35 35 H 0.96993 * 119.99956 * 322.61607 * 6 5 4 36 36 H 1.08006 * 119.87445 * 359.97438 * 11 10 7 37 37 H 1.07999 * 119.74900 * 179.97438 * 12 11 10 38 38 H 1.08000 * 119.88307 * 180.02562 * 13 12 11 39 39 H 1.08010 * 120.13162 * 180.27444 * 14 13 12 40 40 H 0.97000 * 120.00357 * 179.97438 * 19 18 16 41 41 H 1.08996 * 109.52485 * 62.96768 * 24 5 4 42 42 H 1.09005 * 109.52383 * 183.15997 * 24 5 4 43 43 H 1.09006 * 109.47068 * 299.97029 * 27 25 24 44 44 H 1.09001 * 109.47175 * 59.96879 * 27 25 24 45 45 H 1.08996 * 109.47262 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0404 -0.7222 1.2496 5 6 1.5756 -2.1813 1.2122 6 7 2.1224 -2.8996 2.3660 7 16 1.2091 -4.0465 3.1361 8 8 -0.0592 -3.4533 3.3784 9 8 2.0258 -4.5836 4.1675 10 6 0.9356 -5.3536 1.9865 11 6 -0.3416 -5.6485 1.5668 12 6 -0.5596 -6.6758 0.6622 13 6 0.5035 -7.4171 0.1695 14 6 1.7894 -7.1361 0.5707 15 6 2.0220 -6.0995 1.4937 16 6 3.3385 -5.8056 1.9177 17 1 3.5971 -4.8014 2.2196 18 6 4.3064 -6.8159 1.9461 19 7 3.9496 -8.0676 1.8141 20 14 6.1081 -6.3772 2.1727 21 1 6.2351 -4.9183 2.4188 22 1 6.6575 -7.1247 3.3324 23 1 6.8638 -6.7401 0.9469 24 6 2.0746 -2.8336 -0.0808 25 6 1.5645 -2.0284 -1.2790 26 1 0.4749 -2.0550 -1.2960 27 6 2.1099 -2.6372 -2.5724 28 8 2.0065 -0.6742 -1.1663 29 1 -0.3634 0.5822 0.8469 30 1 -0.3634 0.4423 -0.9276 31 1 -0.3634 -1.0245 0.0807 32 1 1.6419 -0.2357 2.1399 33 1 3.1297 -0.6874 1.2711 34 1 0.4867 -2.2179 1.2424 35 1 3.0192 -2.7033 2.6790 36 1 -1.1772 -5.0773 1.9438 37 1 -1.5651 -6.9006 0.3386 38 1 0.3223 -8.2151 -0.5353 39 1 2.6166 -7.7118 0.1823 40 1 4.6205 -8.7678 1.8334 41 1 3.1645 -2.8427 -0.0871 42 1 1.7005 -3.8556 -0.1411 43 1 3.1995 -2.6110 -2.5551 44 1 1.7726 -3.6702 -2.6582 45 1 1.7462 -2.0642 -3.4253 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601383986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:05 Heat of formation + Delta-G solvation = -118.528037 kcal Electronic energy + Delta-G solvation = -29556.078240 eV Core-core repulsion = 25664.488813 eV Total energy + Delta-G solvation = -3891.589427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -39.86859 -37.64157 -36.26871 -35.36315 -34.86327 -33.91665 -33.25836 -31.12628 -30.26429 -29.59287 -28.41345 -26.56685 -25.56992 -22.84363 -21.98290 -21.66200 -21.16403 -19.46729 -18.55522 -17.73432 -16.91554 -16.69211 -16.07831 -15.90751 -15.44502 -14.96872 -14.69204 -14.39971 -14.31847 -13.92927 -13.69224 -13.32369 -13.18177 -12.80391 -12.73975 -12.53906 -12.08102 -11.97743 -11.88097 -11.61131 -11.55920 -11.37594 -11.30873 -11.19794 -11.17820 -11.09903 -11.03393 -11.00618 -10.89724 -10.72341 -10.51737 -9.93194 -9.90499 -9.52076 -9.46923 -9.32679 -8.78449 -8.05648 -7.63954 -7.06839 -4.79516 1.50593 2.30305 2.68856 2.94992 3.00441 3.07298 3.74358 3.79842 3.90587 4.37284 4.67832 4.73640 4.91551 4.97748 5.09257 5.14719 5.25448 5.34508 5.38937 5.43718 5.55238 5.59469 5.64161 5.85080 5.89632 5.91166 6.01033 6.01821 6.08245 6.18059 6.20272 6.26517 6.31223 6.36779 6.49687 6.65492 6.75449 6.91468 7.04802 7.26917 7.37570 7.45563 7.52097 7.64436 7.77575 7.86019 8.25384 8.47008 8.61280 9.86453 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010559 B = 0.005467 C = 0.005163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.129792 B = 5120.630925 C = 5422.079521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.092 3.908 3 H 0.102 0.898 4 C -0.154 4.154 5 C 0.157 3.843 6 N -1.116 6.116 7 S 2.697 3.303 8 O -0.999 6.999 9 O -0.966 6.966 10 C -0.774 4.774 11 C -0.003 4.003 12 C -0.249 4.249 13 C -0.076 4.076 14 C -0.158 4.158 15 C 0.190 3.810 16 C -0.445 4.445 17 H 0.088 0.912 18 C 0.081 3.919 19 N -0.775 5.775 20 Si 0.914 3.086 21 H -0.255 1.255 22 H -0.269 1.269 23 H -0.269 1.269 24 C -0.169 4.169 25 C 0.086 3.914 26 H 0.061 0.939 27 C -0.142 4.142 28 O -0.377 6.377 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.411 0.589 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.123 0.877 40 H 0.287 0.713 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.906 10.260 -5.909 11.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.034 3.966 3 H 0.119 0.881 4 C -0.194 4.194 5 C 0.050 3.950 6 N -0.871 5.871 7 S 2.795 3.205 8 O -0.990 6.990 9 O -0.956 6.956 10 C -0.869 4.869 11 C -0.023 4.023 12 C -0.270 4.270 13 C -0.095 4.095 14 C -0.178 4.178 15 C 0.185 3.815 16 C -0.474 4.474 17 H 0.105 0.895 18 C -0.140 4.140 19 N -0.398 5.398 20 Si 0.737 3.263 21 H -0.178 1.178 22 H -0.194 1.194 23 H -0.194 1.194 24 C -0.208 4.208 25 C 0.028 3.972 26 H 0.079 0.921 27 C -0.200 4.200 28 O -0.296 6.296 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.244 0.756 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.141 0.859 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.171 10.143 -5.179 11.449 hybrid contribution 1.028 -0.585 -0.168 1.194 sum -0.144 9.558 -5.346 10.953 Atomic orbital electron populations 1.22524 0.96442 1.03287 1.02635 1.22088 0.93464 0.96173 0.84908 0.88067 1.22508 1.02398 0.95583 0.98862 1.20679 0.98235 0.90879 0.85252 1.55759 1.30135 1.56351 1.44820 1.01148 0.72261 0.73080 0.73977 1.93445 1.42570 1.77830 1.85111 1.93543 1.68792 1.78503 1.54758 1.29836 0.99826 1.27121 1.30149 1.20236 0.94142 0.94752 0.93189 1.20472 0.97286 1.02552 1.06671 1.20891 0.93742 0.97046 0.97791 1.21491 0.95651 1.00932 0.99692 1.16959 0.90444 0.88175 0.85918 1.19882 0.93865 0.97274 1.36354 0.89453 1.25941 1.02154 0.94210 0.91740 1.69785 1.36847 1.00589 1.32583 0.86141 0.80482 0.80721 0.78921 1.17807 1.19434 1.19360 1.22819 1.03094 1.01211 0.93661 1.22095 0.98079 0.81630 0.95412 0.92145 1.21742 1.02062 1.00589 0.95578 1.87946 1.73874 1.24950 1.42856 0.91343 0.91826 0.91506 0.90313 0.90428 0.89247 0.75566 0.87564 0.88801 0.88886 0.85883 0.90168 0.90233 0.88960 0.91865 0.90784 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.04 8.62 37.15 0.32 -1.72 16 2 C 0.09 1.05 3.91 -26.69 -0.10 0.94 16 3 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 4 C -0.15 -1.89 5.19 -26.59 -0.14 -2.03 16 5 C 0.16 2.38 2.57 -67.75 -0.17 2.21 16 6 N -1.12 -19.15 4.49 -4.73 -0.02 -19.17 16 7 S 2.70 58.09 4.92 -107.50 -0.53 57.56 16 8 O -1.00 -22.37 16.34 -57.17 -0.93 -23.31 16 9 O -0.97 -23.87 16.71 -57.17 -0.96 -24.83 16 10 C -0.77 -17.83 5.16 -38.87 -0.20 -18.03 16 11 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 12 C -0.25 -5.26 10.05 -39.29 -0.39 -5.66 16 13 C -0.08 -1.64 10.02 -39.66 -0.40 -2.04 16 14 C -0.16 -3.75 8.66 -38.87 -0.34 -4.09 16 15 C 0.19 4.62 5.17 -106.82 -0.55 4.07 16 16 C -0.45 -10.76 7.68 -37.74 -0.29 -11.05 16 17 H 0.09 1.98 5.66 -52.49 -0.30 1.68 16 18 C 0.08 1.90 5.23 -17.34 -0.09 1.81 16 19 N -0.77 -18.68 10.92 55.55 0.61 -18.07 16 20 Si 0.91 17.71 29.58 -169.99 -5.03 12.68 16 21 H -0.25 -4.83 7.11 56.52 0.40 -4.42 16 22 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 23 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 24 C -0.17 -2.57 5.03 -26.58 -0.13 -2.71 16 25 C 0.09 1.15 2.94 -26.68 -0.08 1.07 16 26 H 0.06 0.78 6.45 -51.93 -0.33 0.45 16 27 C -0.14 -1.74 9.56 37.16 0.36 -1.39 16 28 O -0.38 -5.02 10.24 -35.23 -0.36 -5.38 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.79 5.01 -51.92 -0.26 0.53 16 32 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.09 1.40 5.90 -51.93 -0.31 1.09 16 35 H 0.41 6.34 8.56 -34.47 -0.30 6.05 16 36 H 0.11 2.17 7.33 -52.48 -0.38 1.79 16 37 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.12 2.97 6.28 -52.48 -0.33 2.64 16 40 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 41 H 0.08 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.09 1.61 6.97 -51.93 -0.36 1.25 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -29.47 363.67 -10.69 -40.16 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -6.35 Total: 13.93 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: -2.59 Total: -39.06 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.59 Total: -37.24 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -2.25 Total: -53.52 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: 58.09 SS G_CDS: -0.53 Total: 57.56 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.47 -10.69 -40.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601383986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.370 kcal (2) G-P(sol) polarization free energy of solvation -29.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds