Wall clock time and date at job start Tue Mar 31 2020 23:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.48252 * 2 1 4 4 C 1.53094 * 109.48181 * 239.97150 * 2 1 3 5 5 C 1.53201 * 109.14944 * 297.61768 * 4 2 1 6 6 N 1.46509 * 109.53729 * 183.15208 * 5 4 2 7 7 S 1.65600 * 120.00111 * 264.41204 * 6 5 4 8 8 O 1.42105 * 106.40000 * 48.75829 * 7 6 5 9 9 O 1.42102 * 106.40077 * 181.67318 * 7 6 5 10 10 C 1.76192 * 107.22015 * 295.21613 * 7 6 5 11 11 C 1.37643 * 120.12821 * 115.46938 * 10 7 6 12 12 C 1.38609 * 120.24725 * 179.97438 * 11 10 7 13 13 C 1.38654 * 120.50556 * 0.02562 * 12 11 10 14 14 C 1.37596 * 120.24597 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.12804 * 295.19776 * 10 7 6 16 16 C 1.41390 * 120.24518 * 359.97438 * 15 10 7 17 17 H 1.08005 * 119.99756 * 28.33304 * 16 15 10 18 18 C 1.39949 * 120.00264 * 208.33667 * 16 15 10 19 19 N 1.30823 * 119.99699 * 11.39627 * 18 16 15 20 20 Si 1.86792 * 120.00018 * 191.39619 * 18 16 15 21 21 H 1.48504 * 109.47463 * 5.00772 * 20 18 16 22 22 H 1.48506 * 109.47186 * 125.00788 * 20 18 16 23 23 H 1.48506 * 109.47281 * 245.00333 * 20 18 16 24 24 C 1.53167 * 109.04398 * 303.02010 * 5 4 2 25 25 C 1.53095 * 109.16110 * 56.98235 * 24 5 4 26 26 H 1.08999 * 109.48008 * 62.37316 * 25 24 5 27 27 C 1.53006 * 109.49104 * 182.40063 * 25 24 5 28 28 O 1.42900 * 109.41752 * 302.39187 * 25 24 5 29 29 H 1.08995 * 109.46973 * 295.23023 * 1 2 3 30 30 H 1.09000 * 109.47109 * 175.23022 * 1 2 3 31 31 H 1.09004 * 109.46740 * 55.22990 * 1 2 3 32 32 H 1.09007 * 109.51749 * 57.53262 * 4 2 1 33 33 H 1.09000 * 109.52492 * 177.71939 * 4 2 1 34 34 H 1.09000 * 109.61455 * 62.94033 * 5 4 2 35 35 H 0.96995 * 119.99470 * 84.41631 * 6 5 4 36 36 H 1.08003 * 119.87609 * 0.02562 * 11 10 7 37 37 H 1.08006 * 119.75049 * 179.97438 * 12 11 10 38 38 H 1.08005 * 119.87867 * 179.97438 * 13 12 11 39 39 H 1.08004 * 120.12752 * 179.97438 * 14 13 12 40 40 H 0.96999 * 119.99757 * 180.02562 * 19 18 16 41 41 H 1.08995 * 109.52575 * 297.07810 * 24 5 4 42 42 H 1.08998 * 109.57716 * 176.91480 * 24 5 4 43 43 H 1.09001 * 109.46765 * 179.97438 * 27 25 24 44 44 H 1.08998 * 109.46859 * 299.94799 * 27 25 24 45 45 H 1.08996 * 109.46711 * 59.95008 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7223 -1.2496 5 6 1.5757 -2.1815 -1.2117 6 7 2.1224 -2.9000 -2.3656 7 16 1.2135 -3.0749 -3.7388 8 8 0.7041 -1.7852 -4.0497 9 8 1.9974 -3.8398 -4.6441 10 6 -0.1776 -4.0718 -3.3200 11 6 -1.4482 -3.5460 -3.3823 12 6 -2.5444 -4.3282 -3.0539 13 6 -2.3754 -5.6465 -2.6590 14 6 -1.1144 -6.1927 -2.5885 15 6 0.0055 -5.4100 -2.9261 16 6 1.3054 -5.9628 -2.8644 17 1 2.1541 -5.3257 -2.6635 18 6 1.4924 -7.3353 -3.0637 19 7 0.5118 -8.0690 -3.5237 20 14 3.1420 -8.1196 -2.6729 21 1 4.0378 -7.1078 -2.0572 22 1 2.9426 -9.2460 -1.7258 23 1 3.7571 -8.6288 -3.9250 24 6 2.0765 -2.8322 0.0813 25 6 1.5646 -2.0283 1.2793 26 1 0.4750 -2.0548 1.2961 27 6 2.1097 -2.6368 2.5730 28 8 2.0066 -0.6740 1.1665 29 1 -0.3633 0.4380 0.9296 30 1 -0.3633 -1.0241 -0.0855 31 1 -0.3633 0.5861 -0.8442 32 1 1.6421 -0.2356 -2.1399 33 1 3.1298 -0.6874 -1.2710 34 1 0.4868 -2.2195 -1.2412 35 1 3.0168 -3.2732 -2.3251 36 1 -1.5916 -2.5204 -3.6890 37 1 -3.5377 -3.9073 -3.1052 38 1 -3.2366 -6.2467 -2.4050 39 1 -0.9850 -7.2197 -2.2802 40 1 0.6412 -9.0204 -3.6615 41 1 3.1664 -2.8400 0.0868 42 1 1.7045 -3.8549 0.1433 43 1 1.7454 -2.0639 3.4257 44 1 1.7724 -3.6697 2.6589 45 1 3.1992 -2.6106 2.5559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601383987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:08 Heat of formation + Delta-G solvation = -138.023865 kcal Electronic energy + Delta-G solvation = -29284.340379 eV Core-core repulsion = 25391.905549 eV Total energy + Delta-G solvation = -3892.434830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.93406 -39.38986 -38.04377 -36.68329 -36.62090 -35.67337 -34.25981 -32.34376 -31.99590 -31.36158 -29.49591 -27.56537 -27.36595 -23.96695 -23.45669 -23.12215 -22.89830 -20.64032 -20.06330 -19.51149 -18.51897 -18.03886 -17.46714 -17.21869 -17.06136 -16.49007 -16.03390 -15.86401 -15.61179 -15.14285 -15.02510 -14.96660 -14.74443 -14.48596 -13.82137 -13.72830 -13.51054 -13.30478 -13.09463 -13.01170 -12.98898 -12.88185 -12.82936 -12.81117 -12.75097 -12.60126 -12.49116 -12.33696 -12.14516 -12.10011 -11.89447 -11.65771 -11.21459 -11.12827 -11.02305 -10.43343 -10.22668 -9.84689 -9.44360 -8.80573 -6.62528 -0.18117 0.51930 0.95933 1.35950 1.48550 1.51141 2.14478 2.29830 2.62193 2.85964 2.97375 3.45804 3.65698 3.79085 3.85729 3.94982 4.01412 4.17105 4.20701 4.32544 4.38084 4.45313 4.49301 4.56329 4.61186 4.70586 4.78285 4.86714 4.91101 4.96932 5.03320 5.11104 5.14050 5.19327 5.21737 5.27153 5.30483 5.37495 5.42042 5.50845 5.69810 5.81604 5.99790 6.07113 6.19670 6.36115 6.46692 6.66794 6.82504 8.15603 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010822 B = 0.005255 C = 0.004657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.733035 B = 5326.652122 C = 6010.368131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.093 3.907 3 H 0.123 0.877 4 C -0.166 4.166 5 C 0.154 3.846 6 N -1.105 6.105 7 S 2.716 3.284 8 O -1.004 7.004 9 O -1.002 7.002 10 C -0.793 4.793 11 C -0.017 4.017 12 C -0.250 4.250 13 C -0.075 4.075 14 C -0.185 4.185 15 C 0.163 3.837 16 C -0.473 4.473 17 H 0.094 0.906 18 C 0.039 3.961 19 N -0.808 5.808 20 Si 0.974 3.026 21 H -0.245 1.245 22 H -0.255 1.255 23 H -0.270 1.270 24 C -0.151 4.151 25 C 0.084 3.916 26 H 0.063 0.937 27 C -0.140 4.140 28 O -0.382 6.382 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.420 0.580 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.115 0.885 40 H 0.295 0.705 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.600 8.095 10.774 13.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.035 3.965 3 H 0.141 0.859 4 C -0.206 4.206 5 C 0.047 3.953 6 N -0.863 5.863 7 S 2.813 3.187 8 O -0.994 6.994 9 O -0.992 6.992 10 C -0.887 4.887 11 C -0.037 4.037 12 C -0.270 4.270 13 C -0.094 4.094 14 C -0.204 4.204 15 C 0.159 3.841 16 C -0.501 4.501 17 H 0.111 0.889 18 C -0.179 4.179 19 N -0.432 5.432 20 Si 0.793 3.207 21 H -0.168 1.168 22 H -0.179 1.179 23 H -0.195 1.195 24 C -0.190 4.190 25 C 0.025 3.975 26 H 0.081 0.919 27 C -0.197 4.197 28 O -0.301 6.301 29 H 0.094 0.906 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.255 0.745 36 H 0.139 0.861 37 H 0.145 0.855 38 H 0.140 0.860 39 H 0.132 0.868 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.695 8.392 9.980 13.315 hybrid contribution 0.034 -1.438 -0.256 1.461 sum 2.729 6.955 9.724 12.262 Atomic orbital electron populations 1.22516 0.96095 1.02660 1.03586 1.22225 0.93819 0.96856 0.83644 0.85928 1.22770 1.02851 0.95194 0.99784 1.20843 0.97746 0.91295 0.85396 1.55429 1.28865 1.70655 1.31358 1.00487 0.73352 0.72294 0.72586 1.93425 1.81603 1.40792 1.83601 1.93488 1.70539 1.72605 1.62605 1.30154 1.14455 1.11013 1.33078 1.20569 0.91717 0.98361 0.93006 1.20886 0.98058 0.95309 1.12707 1.21248 0.96744 0.95192 0.96217 1.21576 0.92658 1.00405 1.05808 1.17310 0.94185 0.89053 0.83600 1.20164 0.93714 0.94593 1.41602 0.88853 1.26805 1.02692 0.97325 0.91095 1.69821 1.34936 1.08942 1.29539 0.85262 0.76988 0.79101 0.79304 1.16760 1.17897 1.19533 1.22538 1.02812 1.00386 0.93312 1.22148 0.98443 0.81724 0.95144 0.91946 1.21751 1.02059 1.00883 0.95016 1.87944 1.74024 1.24779 1.43385 0.90595 0.92923 0.90713 0.90430 0.89868 0.90624 0.74489 0.86057 0.85536 0.86019 0.86759 0.89400 0.89709 0.90376 0.91152 0.90262 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.11 8.62 71.98 0.62 -3.49 16 2 C 0.09 2.04 3.91 30.63 0.12 2.16 16 3 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 4 C -0.17 -4.30 5.25 30.69 0.16 -4.14 16 5 C 0.15 4.57 2.44 45.11 0.11 4.68 16 6 N -1.10 -37.73 4.60 -168.86 -0.78 -38.51 16 7 S 2.72 117.91 4.87 -56.49 -0.28 117.64 16 8 O -1.00 -44.22 16.37 -128.00 -2.09 -46.31 16 9 O -1.00 -50.50 16.58 -128.00 -2.12 -52.63 16 10 C -0.79 -37.50 5.78 22.73 0.13 -37.36 16 11 C -0.02 -0.74 9.53 22.22 0.21 -0.53 16 12 C -0.25 -10.32 10.05 22.46 0.23 -10.10 16 13 C -0.08 -3.25 10.02 22.22 0.22 -3.03 16 14 C -0.18 -9.06 8.66 22.73 0.20 -8.86 16 15 C 0.16 8.26 5.55 -21.29 -0.12 8.14 16 16 C -0.47 -23.53 7.66 23.46 0.18 -23.35 16 17 H 0.09 4.32 5.72 -2.91 -0.02 4.31 16 18 C 0.04 1.85 5.24 85.26 0.45 2.29 16 19 N -0.81 -39.91 10.87 21.83 0.24 -39.68 16 20 Si 0.97 35.95 29.57 68.60 2.03 37.98 16 21 H -0.24 -8.53 7.11 99.48 0.71 -7.82 16 22 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 23 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 24 C -0.15 -3.89 4.95 30.68 0.15 -3.73 16 25 C 0.08 1.91 2.94 30.63 0.09 2.00 16 26 H 0.06 1.44 6.45 -2.39 -0.02 1.42 16 27 C -0.14 -2.60 9.57 71.98 0.69 -1.91 16 28 O -0.38 -9.03 10.24 -148.98 -1.53 -10.55 16 29 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.05 1.26 5.01 -2.39 -0.01 1.25 16 31 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 32 H 0.08 2.18 7.77 -2.38 -0.02 2.16 16 33 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 2.43 6.22 -2.39 -0.01 2.41 16 35 H 0.42 12.82 8.58 -96.75 -0.83 11.99 16 36 H 0.12 4.88 7.33 -2.91 -0.02 4.86 16 37 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 38 H 0.12 4.45 8.06 -2.91 -0.02 4.42 16 39 H 0.11 5.75 6.24 -2.91 -0.02 5.73 16 40 H 0.29 13.02 8.30 -92.71 -0.77 12.25 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -63.54 365.60 -0.91 -64.44 By element: Atomic # 1 Polarization: 44.67 SS G_CDS: 0.18 Total: 44.85 kcal Atomic # 6 Polarization: -80.67 SS G_CDS: 3.44 Total: -77.23 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -0.54 Total: -78.18 kcal Atomic # 8 Polarization: -103.75 SS G_CDS: -5.74 Total: -109.49 kcal Atomic # 14 Polarization: 35.95 SS G_CDS: 2.03 Total: 37.98 kcal Atomic # 16 Polarization: 117.91 SS G_CDS: -0.28 Total: 117.64 kcal Total: -63.54 -0.91 -64.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601383987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.582 kcal (2) G-P(sol) polarization free energy of solvation -63.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds