Wall clock time and date at job start Tue Mar 31 2020 23:36:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.48121 * 2 1 4 4 C 1.53098 * 109.48382 * 239.97790 * 2 1 3 5 5 C 1.53173 * 109.16809 * 182.39792 * 4 2 1 6 6 H 1.09000 * 109.54037 * 297.02132 * 5 4 2 7 7 C 1.53000 * 109.54445 * 176.84837 * 5 4 2 8 8 N 1.46493 * 109.47076 * 174.99737 * 7 5 4 9 9 S 1.65602 * 119.99951 * 162.94252 * 8 7 5 10 10 O 1.42098 * 106.40289 * 311.81272 * 9 8 7 11 11 O 1.42098 * 106.40439 * 178.88728 * 9 8 7 12 12 C 1.76203 * 107.21698 * 65.35187 * 9 8 7 13 13 C 1.37637 * 120.12907 * 245.25972 * 12 9 8 14 14 C 1.38618 * 120.24974 * 179.97438 * 13 12 9 15 15 C 1.38653 * 120.50122 * 359.97438 * 14 13 12 16 16 C 1.37604 * 120.24623 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.12620 * 65.23482 * 12 9 8 18 18 C 1.41401 * 120.24688 * 0.02562 * 17 12 9 19 19 H 1.08001 * 119.99550 * 329.04704 * 18 17 12 20 20 C 1.39941 * 120.00125 * 149.04399 * 18 17 12 21 21 N 1.30826 * 120.00068 * 346.31402 * 20 18 17 22 22 Si 1.86796 * 120.00067 * 166.31005 * 20 18 17 23 23 H 1.48505 * 109.46889 * 60.00592 * 22 20 18 24 24 H 1.48498 * 109.47326 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47263 * 300.00565 * 22 20 18 26 26 C 1.53181 * 109.03631 * 56.97772 * 5 4 2 27 27 C 1.53092 * 109.16469 * 303.02067 * 26 5 4 28 28 O 1.42903 * 109.41415 * 57.60659 * 27 26 5 29 29 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46956 * 300.02127 * 1 2 3 31 31 H 1.09001 * 109.47395 * 60.02363 * 1 2 3 32 32 H 1.09000 * 109.51883 * 62.48616 * 4 2 1 33 33 H 1.09001 * 109.51837 * 302.30503 * 4 2 1 34 34 H 1.08998 * 109.47167 * 54.99422 * 7 5 4 35 35 H 1.08999 * 109.46853 * 295.00079 * 7 5 4 36 36 H 0.96996 * 120.00417 * 342.94889 * 8 7 5 37 37 H 1.08001 * 119.87420 * 359.95721 * 13 12 9 38 38 H 1.07997 * 119.74773 * 179.97438 * 14 13 12 39 39 H 1.07998 * 119.87944 * 179.74546 * 15 14 13 40 40 H 1.07998 * 120.12274 * 179.97438 * 16 15 14 41 41 H 0.96999 * 119.99847 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.52173 * 62.92781 * 26 5 4 43 43 H 1.09002 * 109.52171 * 183.11442 * 26 5 4 44 44 H 1.08997 * 109.48215 * 297.62910 * 27 26 5 45 45 H 1.08998 * 109.48796 * 177.59263 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2497 5 6 3.5711 -0.7705 -1.2124 6 1 3.9687 0.2439 -1.2427 7 6 4.0877 -1.5589 -2.4176 8 7 5.5513 -1.5034 -2.4464 9 16 6.4032 -2.5879 -3.3632 10 8 5.8708 -3.8711 -3.0647 11 8 7.7761 -2.2591 -3.2014 12 6 6.0103 -2.2665 -5.0506 13 6 5.3348 -3.2075 -5.7940 14 6 5.0240 -2.9570 -7.1214 15 6 5.3882 -1.7583 -7.7154 16 6 6.0640 -0.8031 -6.9913 17 6 6.3854 -1.0467 -5.6430 18 6 7.0796 -0.0725 -4.8891 19 1 6.9079 0.0110 -3.8261 20 6 7.9893 0.7833 -5.5203 21 7 8.4006 0.5205 -6.7341 22 14 8.6161 2.3011 -4.6299 23 1 9.3138 1.8915 -3.3846 24 1 9.5613 3.0355 -5.5087 25 1 7.4711 3.1830 -4.2887 26 6 4.0178 -1.4597 0.0806 27 6 3.4310 -0.7091 1.2788 28 8 2.0068 -0.6741 1.1663 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5135 -0.8902 32 1 1.7146 -0.1842 -2.1399 33 1 1.6444 -1.7374 -1.2710 34 1 3.6894 -1.1239 -3.3342 35 1 3.7649 -2.5970 -2.3381 36 1 6.0215 -0.8314 -1.9285 37 1 5.0461 -4.1446 -5.3414 38 1 4.4941 -3.7013 -7.6974 39 1 5.1445 -1.5754 -8.7516 40 1 6.3471 0.1297 -7.4561 41 1 9.0309 1.1139 -7.1718 42 1 3.6617 -2.4898 0.0861 43 1 5.1061 -1.4492 0.1416 44 1 3.8193 0.3092 1.2956 45 1 3.7103 -1.2199 2.2003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601386183.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:37 Heat of formation + Delta-G solvation = -125.490632 kcal Electronic energy + Delta-G solvation = -28270.317129 eV Core-core repulsion = 24378.425782 eV Total energy + Delta-G solvation = -3891.891348 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.69478 -37.61463 -36.30944 -35.91958 -34.83455 -33.89192 -32.99972 -32.29107 -30.23745 -29.60457 -28.24702 -25.73244 -25.48446 -23.40203 -21.67690 -21.52652 -21.15216 -20.27635 -18.58499 -17.71288 -16.83144 -16.46891 -16.29037 -15.79470 -15.52669 -15.40727 -14.96769 -14.59090 -14.32827 -14.28747 -13.81311 -13.31890 -13.19959 -12.82626 -12.75850 -12.67976 -12.44580 -12.34103 -12.01400 -11.90380 -11.57318 -11.32157 -11.26008 -11.20076 -11.16908 -11.11116 -11.02986 -10.89910 -10.72391 -10.62948 -10.55520 -10.31146 -9.91191 -9.55941 -9.46400 -9.41048 -8.77277 -8.05679 -7.62120 -7.05661 -4.77420 1.52855 2.31814 2.71266 2.94492 2.96895 3.09413 3.66164 3.75792 3.92084 4.38740 4.56074 4.62356 4.75535 4.77000 4.85353 5.05519 5.16650 5.25548 5.30843 5.39702 5.43828 5.50650 5.58312 5.64437 5.68708 5.79588 5.84453 5.91325 5.99876 6.02035 6.05140 6.10798 6.20778 6.25696 6.37421 6.45033 6.76590 6.90176 7.05526 7.14460 7.28361 7.45678 7.51694 7.64091 7.77191 7.86845 8.25019 8.48596 8.61719 9.89852 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.004077 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.553321 B = 6865.865769 C = 7620.434559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.057 0.943 4 C -0.145 4.145 5 C -0.095 4.095 6 H 0.079 0.921 7 C 0.131 3.869 8 N -1.121 6.121 9 S 2.701 3.299 10 O -0.998 6.998 11 O -0.964 6.964 12 C -0.774 4.774 13 C -0.003 4.003 14 C -0.250 4.250 15 C -0.075 4.075 16 C -0.157 4.157 17 C 0.190 3.810 18 C -0.451 4.451 19 H 0.086 0.914 20 C 0.083 3.917 21 N -0.776 5.776 22 Si 0.912 3.088 23 H -0.257 1.257 24 H -0.274 1.274 25 H -0.260 1.260 26 C -0.153 4.153 27 C 0.062 3.938 28 O -0.383 6.383 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.410 0.590 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.288 0.712 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.048 0.952 45 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.111 3.098 9.280 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.075 0.925 4 C -0.183 4.183 5 C -0.115 4.115 6 H 0.098 0.902 7 C 0.004 3.996 8 N -0.878 5.878 9 S 2.798 3.202 10 O -0.989 6.989 11 O -0.954 6.954 12 C -0.869 4.869 13 C -0.023 4.023 14 C -0.270 4.270 15 C -0.094 4.094 16 C -0.177 4.177 17 C 0.186 3.814 18 C -0.479 4.479 19 H 0.104 0.896 20 C -0.139 4.139 21 N -0.399 5.399 22 Si 0.735 3.265 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.185 1.185 26 C -0.191 4.191 27 C -0.014 4.014 28 O -0.303 6.303 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.243 0.757 37 H 0.126 0.874 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.137 0.863 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.067 0.933 45 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -9.590 2.297 9.486 13.683 hybrid contribution 0.513 1.412 -0.542 1.598 sum -9.077 3.709 8.944 13.272 Atomic orbital electron populations 1.21763 0.93213 1.02939 1.02275 1.22075 0.94892 0.94974 0.85164 0.92530 1.22250 0.95111 1.02413 0.98560 1.21408 0.95339 1.00115 0.94674 0.90247 1.21149 0.79818 1.00795 0.97842 1.55666 1.15064 1.52644 1.64449 1.01070 0.72839 0.72063 0.74221 1.93444 1.80921 1.39366 1.85127 1.93548 1.31288 1.83969 1.86612 1.29920 1.29052 1.05026 1.22928 1.20269 0.92348 0.95716 0.93956 1.20493 1.11589 0.99123 0.95791 1.20893 0.96806 0.94156 0.97585 1.21393 1.01211 0.99605 0.95496 1.16979 0.84696 0.87798 0.91974 1.19763 1.18678 1.13194 0.96305 0.89558 1.25910 0.94803 0.98489 0.94679 1.69778 1.22890 1.34482 1.12756 0.86268 0.79454 0.80078 0.80661 1.18092 1.19903 1.18461 1.22276 1.01688 1.00721 0.94382 1.22572 0.80859 0.99529 0.98479 1.87905 1.21178 1.78084 1.43085 0.91779 0.92071 0.91047 0.90381 0.90574 0.91580 0.90654 0.75668 0.87415 0.88695 0.88791 0.86345 0.90077 0.90609 0.90402 0.93322 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.56 37.15 0.36 -0.85 16 2 C 0.09 0.86 3.26 -26.69 -0.09 0.78 16 3 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.14 -1.49 4.70 -26.59 -0.13 -1.62 16 5 C -0.10 -1.10 2.31 -90.44 -0.21 -1.31 16 6 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 7 C 0.13 1.88 5.64 -4.05 -0.02 1.86 16 8 N -1.12 -18.77 4.69 -10.62 -0.05 -18.82 16 9 S 2.70 58.24 4.97 -107.50 -0.53 57.71 16 10 O -1.00 -22.48 16.40 -57.17 -0.94 -23.41 16 11 O -0.96 -23.85 16.59 -57.17 -0.95 -24.80 16 12 C -0.77 -18.30 5.94 -38.87 -0.23 -18.53 16 13 C 0.00 -0.07 9.54 -39.66 -0.38 -0.45 16 14 C -0.25 -5.40 10.05 -39.29 -0.39 -5.79 16 15 C -0.08 -1.67 10.02 -39.66 -0.40 -2.07 16 16 C -0.16 -3.83 8.65 -38.87 -0.34 -4.17 16 17 C 0.19 4.77 5.51 -106.82 -0.59 4.18 16 18 C -0.45 -11.12 7.55 -37.74 -0.28 -11.40 16 19 H 0.09 1.96 5.88 -52.49 -0.31 1.65 16 20 C 0.08 1.97 5.18 -17.34 -0.09 1.88 16 21 N -0.78 -19.06 11.16 55.55 0.62 -18.43 16 22 Si 0.91 17.69 29.58 -169.99 -5.03 12.67 16 23 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 25 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 26 C -0.15 -1.71 5.27 -26.59 -0.14 -1.85 16 27 C 0.06 0.63 6.84 37.21 0.25 0.89 16 28 O -0.38 -4.45 10.41 -35.23 -0.37 -4.81 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.08 1.10 7.70 -51.93 -0.40 0.70 16 36 H 0.41 6.10 8.25 -34.47 -0.28 5.81 16 37 H 0.11 2.24 7.32 -52.49 -0.38 1.86 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 40 H 0.12 2.90 6.51 -52.49 -0.34 2.56 16 41 H 0.29 6.38 8.30 -40.82 -0.34 6.05 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.08 0.86 7.73 -51.93 -0.40 0.46 16 44 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -30.69 372.53 -11.06 -41.75 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -6.75 Total: 11.00 kcal Atomic # 6 Polarization: -35.79 SS G_CDS: -2.67 Total: -38.46 kcal Atomic # 7 Polarization: -37.82 SS G_CDS: 0.57 Total: -37.25 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -2.25 Total: -53.02 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 58.24 SS G_CDS: -0.53 Total: 57.71 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.69 -11.06 -41.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386183.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.744 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds