Wall clock time and date at job start Tue Mar 31 2020 23:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09000 * 109.48121 * 2 1 4 4 C 1.53098 * 109.48382 * 239.97790 * 2 1 3 5 5 C 1.53173 * 109.16809 * 182.39792 * 4 2 1 6 6 H 1.09000 * 109.54037 * 297.02132 * 5 4 2 7 7 C 1.53000 * 109.54445 * 176.84837 * 5 4 2 8 8 N 1.46493 * 109.47076 * 174.99737 * 7 5 4 9 9 S 1.65602 * 119.99951 * 162.94252 * 8 7 5 10 10 O 1.42098 * 106.40289 * 311.81272 * 9 8 7 11 11 O 1.42098 * 106.40439 * 178.88728 * 9 8 7 12 12 C 1.76203 * 107.21698 * 65.35187 * 9 8 7 13 13 C 1.37637 * 120.12907 * 245.25972 * 12 9 8 14 14 C 1.38618 * 120.24974 * 179.97438 * 13 12 9 15 15 C 1.38653 * 120.50122 * 359.97438 * 14 13 12 16 16 C 1.37604 * 120.24623 * 0.02562 * 15 14 13 17 17 C 1.40697 * 120.12620 * 65.23482 * 12 9 8 18 18 C 1.41401 * 120.24688 * 0.02562 * 17 12 9 19 19 H 1.08001 * 119.99550 * 329.04704 * 18 17 12 20 20 C 1.39941 * 120.00125 * 149.04399 * 18 17 12 21 21 N 1.30826 * 120.00068 * 346.31402 * 20 18 17 22 22 Si 1.86796 * 120.00067 * 166.31005 * 20 18 17 23 23 H 1.48505 * 109.46889 * 60.00592 * 22 20 18 24 24 H 1.48498 * 109.47326 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47263 * 300.00565 * 22 20 18 26 26 C 1.53181 * 109.03631 * 56.97772 * 5 4 2 27 27 C 1.53092 * 109.16469 * 303.02067 * 26 5 4 28 28 O 1.42903 * 109.41415 * 57.60659 * 27 26 5 29 29 H 1.08998 * 109.47312 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46956 * 300.02127 * 1 2 3 31 31 H 1.09001 * 109.47395 * 60.02363 * 1 2 3 32 32 H 1.09000 * 109.51883 * 62.48616 * 4 2 1 33 33 H 1.09001 * 109.51837 * 302.30503 * 4 2 1 34 34 H 1.08998 * 109.47167 * 54.99422 * 7 5 4 35 35 H 1.08999 * 109.46853 * 295.00079 * 7 5 4 36 36 H 0.96996 * 120.00417 * 342.94889 * 8 7 5 37 37 H 1.08001 * 119.87420 * 359.95721 * 13 12 9 38 38 H 1.07997 * 119.74773 * 179.97438 * 14 13 12 39 39 H 1.07998 * 119.87944 * 179.74546 * 15 14 13 40 40 H 1.07998 * 120.12274 * 179.97438 * 16 15 14 41 41 H 0.96999 * 119.99847 * 179.97438 * 21 20 18 42 42 H 1.08998 * 109.52173 * 62.92781 * 26 5 4 43 43 H 1.09002 * 109.52171 * 183.11442 * 26 5 4 44 44 H 1.08997 * 109.48215 * 297.62910 * 27 26 5 45 45 H 1.08998 * 109.48796 * 177.59263 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0406 -0.7221 -1.2497 5 6 3.5711 -0.7705 -1.2124 6 1 3.9687 0.2439 -1.2427 7 6 4.0877 -1.5589 -2.4176 8 7 5.5513 -1.5034 -2.4464 9 16 6.4032 -2.5879 -3.3632 10 8 5.8708 -3.8711 -3.0647 11 8 7.7761 -2.2591 -3.2014 12 6 6.0103 -2.2665 -5.0506 13 6 5.3348 -3.2075 -5.7940 14 6 5.0240 -2.9570 -7.1214 15 6 5.3882 -1.7583 -7.7154 16 6 6.0640 -0.8031 -6.9913 17 6 6.3854 -1.0467 -5.6430 18 6 7.0796 -0.0725 -4.8891 19 1 6.9079 0.0110 -3.8261 20 6 7.9893 0.7833 -5.5203 21 7 8.4006 0.5205 -6.7341 22 14 8.6161 2.3011 -4.6299 23 1 9.3138 1.8915 -3.3846 24 1 9.5613 3.0355 -5.5087 25 1 7.4711 3.1830 -4.2887 26 6 4.0178 -1.4597 0.0806 27 6 3.4310 -0.7091 1.2788 28 8 2.0068 -0.6741 1.1663 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5135 -0.8902 32 1 1.7146 -0.1842 -2.1399 33 1 1.6444 -1.7374 -1.2710 34 1 3.6894 -1.1239 -3.3342 35 1 3.7649 -2.5970 -2.3381 36 1 6.0215 -0.8314 -1.9285 37 1 5.0461 -4.1446 -5.3414 38 1 4.4941 -3.7013 -7.6974 39 1 5.1445 -1.5754 -8.7516 40 1 6.3471 0.1297 -7.4561 41 1 9.0309 1.1139 -7.1718 42 1 3.6617 -2.4898 0.0861 43 1 5.1061 -1.4492 0.1416 44 1 3.8193 0.3092 1.2956 45 1 3.7103 -1.2199 2.2003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601386183.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:36 Heat of formation + Delta-G solvation = -145.014926 kcal Electronic energy + Delta-G solvation = -28271.163766 eV Core-core repulsion = 24378.425782 eV Total energy + Delta-G solvation = -3892.737985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.54795 -39.38213 -38.05472 -37.10889 -36.66507 -35.65069 -33.85850 -33.33341 -32.01156 -31.38537 -29.10376 -27.35605 -26.65452 -24.28781 -23.43930 -22.96438 -22.37083 -21.21982 -20.18154 -19.49246 -18.46177 -17.90082 -17.34982 -17.13958 -16.96361 -16.61005 -16.15667 -15.97457 -15.65252 -15.44189 -15.10289 -14.96568 -14.78196 -14.44992 -13.93746 -13.68249 -13.57400 -13.37017 -13.29541 -13.06805 -13.00622 -12.94984 -12.84553 -12.82873 -12.77374 -12.61815 -12.43971 -12.17554 -11.99866 -11.84403 -11.65210 -11.55316 -11.18977 -11.15173 -11.10882 -10.42239 -10.18420 -9.84151 -9.42970 -8.80315 -6.60640 -0.16259 0.52686 0.96931 1.36775 1.48268 1.52199 2.16141 2.35594 2.63794 2.91268 2.99110 3.45378 3.62780 3.74957 3.86846 3.91272 4.04409 4.29472 4.32629 4.36519 4.41950 4.47595 4.50498 4.64598 4.66472 4.70795 4.75889 4.83487 4.85971 4.95695 4.97230 5.07194 5.12200 5.12380 5.15485 5.25186 5.29780 5.36404 5.46500 5.51730 5.70020 5.79981 5.98754 6.07950 6.23492 6.36866 6.46201 6.68258 6.82450 8.18139 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011137 B = 0.004077 C = 0.003673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2513.553321 B = 6865.865769 C = 7620.434559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.064 0.936 4 C -0.142 4.142 5 C -0.090 4.090 6 H 0.088 0.912 7 C 0.126 3.874 8 N -1.108 6.108 9 S 2.720 3.280 10 O -1.010 7.010 11 O -0.999 6.999 12 C -0.791 4.791 13 C -0.017 4.017 14 C -0.250 4.250 15 C -0.075 4.075 16 C -0.184 4.184 17 C 0.166 3.834 18 C -0.480 4.480 19 H 0.095 0.905 20 C 0.040 3.960 21 N -0.810 5.810 22 Si 0.974 3.026 23 H -0.260 1.260 24 H -0.265 1.265 25 H -0.244 1.244 26 C -0.154 4.154 27 C 0.062 3.938 28 O -0.399 6.399 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.420 0.580 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.295 0.705 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.060 0.940 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.223 4.036 9.964 15.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.082 0.918 4 C -0.181 4.181 5 C -0.110 4.110 6 H 0.106 0.894 7 C 0.000 4.000 8 N -0.868 5.868 9 S 2.816 3.184 10 O -1.000 7.000 11 O -0.990 6.990 12 C -0.885 4.885 13 C -0.037 4.037 14 C -0.270 4.270 15 C -0.093 4.093 16 C -0.204 4.204 17 C 0.161 3.839 18 C -0.508 4.508 19 H 0.113 0.887 20 C -0.178 4.178 21 N -0.434 5.434 22 Si 0.794 3.206 23 H -0.185 1.185 24 H -0.189 1.189 25 H -0.168 1.168 26 C -0.192 4.192 27 C -0.014 4.014 28 O -0.319 6.319 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.256 0.744 37 H 0.139 0.861 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.126 0.874 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.714 3.228 10.149 15.107 hybrid contribution 0.781 1.011 -0.785 1.499 sum -9.934 4.239 9.364 14.294 Atomic orbital electron populations 1.21776 0.92067 1.02945 1.03209 1.22210 0.95861 0.95035 0.84326 0.91791 1.22247 0.93915 1.02487 0.99430 1.21382 0.96285 0.99959 0.93365 0.89376 1.21349 0.78049 1.01231 0.99333 1.55248 1.16100 1.52171 1.63313 1.00332 0.72108 0.72183 0.73746 1.93421 1.80970 1.40500 1.85118 1.93492 1.33935 1.84589 1.86969 1.30222 1.28959 1.04927 1.24412 1.20591 0.92348 0.96091 0.94630 1.20898 1.10864 0.99511 0.95678 1.21243 0.95495 0.93730 0.98850 1.21460 1.02857 1.00147 0.95940 1.17294 0.85338 0.88567 0.92652 1.20083 1.19536 1.14175 0.96974 0.88705 1.26795 0.94644 1.00986 0.95360 1.69826 1.23735 1.35728 1.14142 0.85350 0.79414 0.76657 0.79215 1.18452 1.18940 1.16756 1.22285 1.01763 1.00329 0.94826 1.22640 0.80319 1.00119 0.98320 1.87895 1.21839 1.78416 1.43774 0.92238 0.91728 0.89553 0.89371 0.91055 0.91744 0.91041 0.74397 0.86051 0.85451 0.85913 0.87384 0.89434 0.91646 0.90384 0.92207 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.56 71.98 0.69 -1.41 16 2 C 0.08 1.49 3.26 30.62 0.10 1.59 16 3 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.14 -2.70 4.70 30.68 0.14 -2.55 16 5 C -0.09 -1.95 2.31 -10.68 -0.02 -1.97 16 6 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 7 C 0.13 3.53 5.64 86.38 0.49 4.02 16 8 N -1.11 -36.56 4.69 -187.51 -0.88 -37.44 16 9 S 2.72 117.75 4.97 -56.49 -0.28 117.47 16 10 O -1.01 -45.31 16.40 -128.00 -2.10 -47.41 16 11 O -1.00 -50.15 16.59 -128.00 -2.12 -52.27 16 12 C -0.79 -37.59 5.94 22.73 0.14 -37.45 16 13 C -0.02 -0.75 9.54 22.22 0.21 -0.54 16 14 C -0.25 -10.39 10.05 22.46 0.23 -10.16 16 15 C -0.07 -3.23 10.02 22.22 0.22 -3.01 16 16 C -0.18 -9.07 8.65 22.73 0.20 -8.88 16 17 C 0.17 8.44 5.51 -21.29 -0.12 8.32 16 18 C -0.48 -23.91 7.55 23.46 0.18 -23.73 16 19 H 0.10 4.34 5.88 -2.91 -0.02 4.33 16 20 C 0.04 1.92 5.18 85.26 0.44 2.36 16 21 N -0.81 -40.44 11.16 21.83 0.24 -40.20 16 22 Si 0.97 35.82 29.58 68.60 2.03 37.85 16 23 H -0.26 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.27 -9.24 7.11 99.48 0.71 -8.54 16 25 H -0.24 -8.26 7.11 99.48 0.71 -7.55 16 26 C -0.15 -3.26 5.27 30.69 0.16 -3.10 16 27 C 0.06 1.16 6.84 72.01 0.49 1.65 16 28 O -0.40 -8.58 10.41 -148.98 -1.55 -10.13 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 2.06 7.70 -2.39 -0.02 2.04 16 36 H 0.42 12.19 8.25 -96.75 -0.80 11.40 16 37 H 0.12 4.94 7.32 -2.91 -0.02 4.92 16 38 H 0.13 4.41 8.06 -2.91 -0.02 4.38 16 39 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 40 H 0.11 5.44 6.51 -2.91 -0.02 5.42 16 41 H 0.29 13.24 8.30 -92.71 -0.77 12.47 16 42 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.08 1.63 7.73 -2.39 -0.02 1.61 16 44 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -65.74 372.53 -0.92 -66.66 By element: Atomic # 1 Polarization: 40.14 SS G_CDS: 0.20 Total: 40.34 kcal Atomic # 6 Polarization: -78.41 SS G_CDS: 3.54 Total: -74.86 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -0.64 Total: -77.64 kcal Atomic # 8 Polarization: -104.04 SS G_CDS: -5.77 Total: -109.81 kcal Atomic # 14 Polarization: 35.82 SS G_CDS: 2.03 Total: 37.85 kcal Atomic # 16 Polarization: 117.75 SS G_CDS: -0.28 Total: 117.47 kcal Total: -65.74 -0.92 -66.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386183.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.355 kcal (2) G-P(sol) polarization free energy of solvation -65.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds