Wall clock time and date at job start Tue Mar 31 2020 23:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49293 * 2 1 4 4 C 1.53092 * 109.48255 * 239.96694 * 2 1 3 5 5 C 1.53175 * 109.16314 * 297.62857 * 4 2 1 6 6 H 1.08994 * 109.54502 * 62.97690 * 5 4 2 7 7 C 1.53011 * 109.54060 * 183.15217 * 5 4 2 8 8 N 1.46500 * 109.46699 * 184.82646 * 7 5 4 9 9 S 1.65604 * 119.99588 * 163.85993 * 8 7 5 10 10 O 1.42100 * 106.39933 * 311.93409 * 9 8 7 11 11 O 1.42103 * 106.39757 * 179.01971 * 9 8 7 12 12 C 1.76199 * 107.21997 * 65.47713 * 9 8 7 13 13 C 1.37644 * 120.12176 * 112.05350 * 12 9 8 14 14 C 1.38617 * 120.24176 * 179.97438 * 13 12 9 15 15 C 1.38657 * 120.50180 * 0.02562 * 14 13 12 16 16 C 1.37593 * 120.25182 * 0.02562 * 15 14 13 17 17 C 1.40693 * 120.12790 * 292.03243 * 12 9 8 18 18 C 1.41398 * 120.24421 * 0.04376 * 17 12 9 19 19 H 1.07997 * 120.00191 * 328.27739 * 18 17 12 20 20 C 1.39947 * 119.99776 * 148.27606 * 18 17 12 21 21 N 1.30817 * 119.99815 * 163.83565 * 20 18 17 22 22 Si 1.86802 * 119.99996 * 343.83486 * 20 18 17 23 23 H 1.48498 * 109.47249 * 94.80117 * 22 20 18 24 24 H 1.48500 * 109.47205 * 214.79869 * 22 20 18 25 25 H 1.48507 * 109.47336 * 334.79943 * 22 20 18 26 26 C 1.53178 * 109.11170 * 303.06130 * 5 4 2 27 27 C 1.53105 * 109.15352 * 56.84826 * 26 5 4 28 28 O 1.42902 * 109.48649 * 302.52405 * 27 26 5 29 29 H 1.09005 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46974 * 300.03206 * 1 2 3 31 31 H 1.08999 * 109.46682 * 60.03231 * 1 2 3 32 32 H 1.09000 * 109.52254 * 177.72102 * 4 2 1 33 33 H 1.08998 * 109.57360 * 57.56833 * 4 2 1 34 34 H 1.08992 * 109.46697 * 64.82294 * 7 5 4 35 35 H 1.08996 * 109.46983 * 304.82154 * 7 5 4 36 36 H 0.96998 * 120.00175 * 343.84811 * 8 7 5 37 37 H 1.07994 * 119.87644 * 0.02562 * 13 12 9 38 38 H 1.08001 * 119.74720 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.86945 * 180.28078 * 15 14 13 40 40 H 1.07991 * 120.13113 * 179.97438 * 16 15 14 41 41 H 0.97000 * 119.99687 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.52290 * 176.84191 * 26 5 4 43 43 H 1.08999 * 109.51886 * 297.03154 * 26 5 4 44 44 H 1.09005 * 109.48084 * 182.49644 * 27 26 5 45 45 H 1.08997 * 109.40442 * 62.51070 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2495 5 6 1.5757 -2.1814 -1.2120 6 1 0.4868 -2.2180 -1.2423 7 6 2.1468 -2.9316 -2.4171 8 7 1.6095 -4.2942 -2.4434 9 16 1.7239 -5.2028 -3.8232 10 8 1.2777 -4.3738 -4.8876 11 8 1.1406 -6.4634 -3.5229 12 6 3.4363 -5.5025 -4.1100 13 6 3.9448 -6.7757 -3.9874 14 6 5.2915 -7.0143 -4.2130 15 6 6.1411 -5.9762 -4.5636 16 6 5.6549 -4.6953 -4.6909 17 6 4.2890 -4.4414 -4.4657 18 6 3.7779 -3.1293 -4.5941 19 1 2.7623 -2.9757 -4.9278 20 6 4.5880 -2.0298 -4.2887 21 7 4.2485 -0.8340 -4.6962 22 14 6.1541 -2.2698 -3.2991 23 1 7.3064 -2.4177 -4.2241 24 1 6.3713 -1.0910 -2.4225 25 1 6.0298 -3.4915 -2.4640 26 6 2.0746 -2.8336 0.0811 27 6 1.5644 -2.0284 1.2791 28 8 2.0065 -0.6742 1.1664 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 3.1298 -0.6875 -1.2708 33 1 1.6431 -0.2362 -2.1404 34 1 3.2333 -2.9707 -2.3390 35 1 1.8669 -2.4129 -3.3340 36 1 1.1870 -4.6643 -1.6526 37 1 3.2920 -7.5918 -3.7153 38 1 5.6821 -8.0164 -4.1142 39 1 7.1878 -6.1744 -4.7415 40 1 6.3184 -3.8882 -4.9636 41 1 4.8099 -0.0719 -4.4842 42 1 1.7005 -3.8556 0.1414 43 1 3.1645 -2.8428 0.0874 44 1 1.9529 -2.4622 2.2006 45 1 0.4749 -2.0550 1.2958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601386184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:41 Heat of formation + Delta-G solvation = -115.254478 kcal Electronic energy + Delta-G solvation = -29384.911349 eV Core-core repulsion = 25493.463874 eV Total energy + Delta-G solvation = -3891.447475 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.79030 -37.95417 -36.45350 -35.75646 -34.91893 -33.90830 -32.65307 -31.77185 -30.75349 -30.13550 -28.40760 -25.76453 -25.22597 -23.41203 -22.18462 -21.62063 -21.18884 -19.16336 -18.57377 -17.77899 -17.20029 -16.61450 -16.01014 -15.98249 -15.63792 -15.31185 -14.65441 -14.47517 -14.30243 -14.25916 -13.78591 -13.59208 -13.32149 -13.16763 -12.90017 -12.67998 -12.33605 -12.13201 -12.04648 -11.81314 -11.66275 -11.37855 -11.29213 -11.25855 -11.16345 -11.07530 -11.03500 -10.72415 -10.70439 -10.47612 -10.25819 -10.03933 -9.89964 -9.53614 -9.38925 -9.27557 -8.67942 -8.27922 -7.86384 -7.25063 -4.90428 1.46679 2.04019 2.48036 2.89101 2.99443 3.08849 3.70892 3.89416 3.95209 4.19446 4.61473 4.81912 4.87978 4.92206 5.03388 5.06830 5.15915 5.36233 5.40032 5.46935 5.55549 5.59895 5.73536 5.80483 5.82990 5.88335 5.92543 6.00355 6.07564 6.16190 6.24084 6.27678 6.35253 6.38338 6.41328 6.58850 6.62538 6.83969 6.90802 7.05465 7.20628 7.28849 7.39181 7.52346 7.63845 7.79282 8.10621 8.28120 8.48180 9.71300 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.005553 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.338836 B = 5040.749251 C = 6133.024353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.087 3.913 3 H 0.100 0.900 4 C -0.142 4.142 5 C -0.100 4.100 6 H 0.076 0.924 7 C 0.131 3.869 8 N -1.121 6.121 9 S 2.707 3.293 10 O -0.968 6.968 11 O -0.999 6.999 12 C -0.769 4.769 13 C 0.017 3.983 14 C -0.258 4.258 15 C -0.045 4.045 16 C -0.233 4.233 17 C 0.162 3.838 18 C -0.465 4.465 19 H 0.137 0.863 20 C 0.094 3.906 21 N -0.771 5.771 22 Si 0.893 3.107 23 H -0.266 1.266 24 H -0.282 1.282 25 H -0.240 1.240 26 C -0.153 4.153 27 C 0.058 3.942 28 O -0.380 6.380 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.404 0.596 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.292 0.708 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.089 0.911 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.670 1.767 9.467 9.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.029 3.971 3 H 0.117 0.883 4 C -0.180 4.180 5 C -0.120 4.120 6 H 0.094 0.906 7 C 0.006 3.994 8 N -0.878 5.878 9 S 2.803 3.197 10 O -0.958 6.958 11 O -0.990 6.990 12 C -0.863 4.863 13 C -0.003 4.003 14 C -0.278 4.278 15 C -0.064 4.064 16 C -0.253 4.253 17 C 0.157 3.843 18 C -0.491 4.491 19 H 0.154 0.846 20 C -0.131 4.131 21 N -0.392 5.392 22 Si 0.719 3.281 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.163 1.163 26 C -0.191 4.191 27 C -0.018 4.018 28 O -0.299 6.299 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.236 0.764 37 H 0.131 0.869 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.093 0.907 44 H 0.107 0.893 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.227 1.990 8.880 9.656 hybrid contribution 1.418 -0.267 0.524 1.536 sum -1.808 1.723 9.405 9.731 Atomic orbital electron populations 1.22457 0.96634 1.02805 1.02429 1.22180 0.93273 0.96300 0.85308 0.88264 1.22147 1.02380 0.95205 0.98276 1.21512 1.00588 0.94946 0.94909 0.90587 1.21799 0.98728 0.80368 0.98508 1.55546 1.75149 1.25709 1.31403 1.00887 0.74395 0.71691 0.72692 1.93502 1.80899 1.68177 1.53200 1.93456 1.77799 1.42696 1.85004 1.29917 1.24188 1.01110 1.31068 1.20391 0.94981 0.94222 0.90657 1.20516 0.94078 0.97868 1.15362 1.20848 0.97637 0.93424 0.94478 1.21229 0.96661 0.96144 1.11225 1.17102 0.90746 0.91739 0.84697 1.20522 1.03824 0.88370 1.36420 0.84610 1.26157 0.98452 0.94575 0.93868 1.69668 1.37198 1.00535 1.31802 0.86577 0.81168 0.79589 0.80809 1.19221 1.20873 1.16260 1.22283 1.02467 0.99512 0.94845 1.22565 0.98523 0.82480 0.98279 1.87956 1.73889 1.24731 1.43364 0.91752 0.92286 0.91347 0.90745 0.90025 0.90568 0.88705 0.76372 0.86864 0.88119 0.88312 0.87653 0.89739 0.90855 0.90728 0.89331 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.94 8.65 37.16 0.32 -1.62 16 2 C 0.09 1.06 3.91 -26.68 -0.10 0.96 16 3 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 4 C -0.14 -1.98 4.93 -26.59 -0.13 -2.11 16 5 C -0.10 -1.41 2.07 -90.43 -0.19 -1.60 16 6 H 0.08 0.99 6.62 -51.93 -0.34 0.65 16 7 C 0.13 2.32 3.72 -4.04 -0.02 2.30 16 8 N -1.12 -19.33 5.89 -10.61 -0.06 -19.39 16 9 S 2.71 56.82 5.44 -107.50 -0.58 56.24 16 10 O -0.97 -23.19 14.96 -57.17 -0.86 -24.04 16 11 O -1.00 -21.74 16.97 -57.17 -0.97 -22.71 16 12 C -0.77 -17.32 5.95 -38.87 -0.23 -17.56 16 13 C 0.02 0.37 9.54 -39.66 -0.38 -0.01 16 14 C -0.26 -5.20 10.05 -39.29 -0.39 -5.59 16 15 C -0.05 -0.93 10.02 -39.66 -0.40 -1.33 16 16 C -0.23 -5.28 7.12 -38.87 -0.28 -5.56 16 17 C 0.16 3.84 5.03 -106.82 -0.54 3.31 16 18 C -0.46 -11.15 5.25 -37.74 -0.20 -11.35 16 19 H 0.14 3.51 4.45 -52.49 -0.23 3.28 16 20 C 0.09 2.12 4.71 -17.34 -0.08 2.04 16 21 N -0.77 -17.55 13.93 55.55 0.77 -16.78 16 22 Si 0.89 18.35 24.03 -169.99 -4.08 14.26 16 23 H -0.27 -5.43 6.72 56.52 0.38 -5.05 16 24 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 25 H -0.24 -5.07 6.83 56.52 0.39 -4.68 16 26 C -0.15 -1.95 5.26 -26.58 -0.14 -2.09 16 27 C 0.06 0.67 6.51 37.21 0.24 0.91 16 28 O -0.38 -5.11 10.60 -35.23 -0.37 -5.48 16 29 H 0.06 0.67 4.98 -51.93 -0.26 0.41 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.08 1.46 5.72 -51.93 -0.30 1.16 16 35 H 0.09 1.89 6.07 -51.93 -0.32 1.58 16 36 H 0.40 5.71 7.45 -34.48 -0.26 5.46 16 37 H 0.11 2.19 7.32 -52.49 -0.38 1.81 16 38 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 39 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.11 2.33 4.82 -52.49 -0.25 2.08 16 41 H 0.29 5.99 8.30 -40.82 -0.34 5.65 16 42 H 0.07 0.83 6.99 -51.93 -0.36 0.47 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 45 H 0.05 0.52 6.34 -51.93 -0.33 0.19 16 LS Contribution 347.36 15.07 5.23 5.23 Total: -1.00 -28.43 347.36 -9.44 -37.87 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: -6.01 Total: 14.09 kcal Atomic # 6 Polarization: -36.78 SS G_CDS: -2.51 Total: -39.29 kcal Atomic # 7 Polarization: -36.88 SS G_CDS: 0.71 Total: -36.17 kcal Atomic # 8 Polarization: -50.03 SS G_CDS: -2.20 Total: -52.23 kcal Atomic # 14 Polarization: 18.35 SS G_CDS: -4.08 Total: 14.26 kcal Atomic # 16 Polarization: 56.82 SS G_CDS: -0.58 Total: 56.24 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.43 -9.44 -37.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.383 kcal (2) G-P(sol) polarization free energy of solvation -28.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds