Wall clock time and date at job start Tue Mar 31 2020 23:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.49293 * 2 1 4 4 C 1.53092 * 109.48255 * 239.96694 * 2 1 3 5 5 C 1.53175 * 109.16314 * 297.62857 * 4 2 1 6 6 H 1.08994 * 109.54502 * 62.97690 * 5 4 2 7 7 C 1.53011 * 109.54060 * 183.15217 * 5 4 2 8 8 N 1.46500 * 109.46699 * 184.82646 * 7 5 4 9 9 S 1.65604 * 119.99588 * 163.85993 * 8 7 5 10 10 O 1.42100 * 106.39933 * 311.93409 * 9 8 7 11 11 O 1.42103 * 106.39757 * 179.01971 * 9 8 7 12 12 C 1.76199 * 107.21997 * 65.47713 * 9 8 7 13 13 C 1.37644 * 120.12176 * 112.05350 * 12 9 8 14 14 C 1.38617 * 120.24176 * 179.97438 * 13 12 9 15 15 C 1.38657 * 120.50180 * 0.02562 * 14 13 12 16 16 C 1.37593 * 120.25182 * 0.02562 * 15 14 13 17 17 C 1.40693 * 120.12790 * 292.03243 * 12 9 8 18 18 C 1.41398 * 120.24421 * 0.04376 * 17 12 9 19 19 H 1.07997 * 120.00191 * 328.27739 * 18 17 12 20 20 C 1.39947 * 119.99776 * 148.27606 * 18 17 12 21 21 N 1.30817 * 119.99815 * 163.83565 * 20 18 17 22 22 Si 1.86802 * 119.99996 * 343.83486 * 20 18 17 23 23 H 1.48498 * 109.47249 * 94.80117 * 22 20 18 24 24 H 1.48500 * 109.47205 * 214.79869 * 22 20 18 25 25 H 1.48507 * 109.47336 * 334.79943 * 22 20 18 26 26 C 1.53178 * 109.11170 * 303.06130 * 5 4 2 27 27 C 1.53105 * 109.15352 * 56.84826 * 26 5 4 28 28 O 1.42902 * 109.48649 * 302.52405 * 27 26 5 29 29 H 1.09005 * 109.47123 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.46974 * 300.03206 * 1 2 3 31 31 H 1.08999 * 109.46682 * 60.03231 * 1 2 3 32 32 H 1.09000 * 109.52254 * 177.72102 * 4 2 1 33 33 H 1.08998 * 109.57360 * 57.56833 * 4 2 1 34 34 H 1.08992 * 109.46697 * 64.82294 * 7 5 4 35 35 H 1.08996 * 109.46983 * 304.82154 * 7 5 4 36 36 H 0.96998 * 120.00175 * 343.84811 * 8 7 5 37 37 H 1.07994 * 119.87644 * 0.02562 * 13 12 9 38 38 H 1.08001 * 119.74720 * 179.97438 * 14 13 12 39 39 H 1.07999 * 119.86945 * 180.28078 * 15 14 13 40 40 H 1.07991 * 120.13113 * 179.97438 * 16 15 14 41 41 H 0.97000 * 119.99687 * 179.97438 * 21 20 18 42 42 H 1.08999 * 109.52290 * 176.84191 * 26 5 4 43 43 H 1.08999 * 109.51886 * 297.03154 * 26 5 4 44 44 H 1.09005 * 109.48084 * 182.49644 * 27 26 5 45 45 H 1.08997 * 109.40442 * 62.51070 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2495 5 6 1.5757 -2.1814 -1.2120 6 1 0.4868 -2.2180 -1.2423 7 6 2.1468 -2.9316 -2.4171 8 7 1.6095 -4.2942 -2.4434 9 16 1.7239 -5.2028 -3.8232 10 8 1.2777 -4.3738 -4.8876 11 8 1.1406 -6.4634 -3.5229 12 6 3.4363 -5.5025 -4.1100 13 6 3.9448 -6.7757 -3.9874 14 6 5.2915 -7.0143 -4.2130 15 6 6.1411 -5.9762 -4.5636 16 6 5.6549 -4.6953 -4.6909 17 6 4.2890 -4.4414 -4.4657 18 6 3.7779 -3.1293 -4.5941 19 1 2.7623 -2.9757 -4.9278 20 6 4.5880 -2.0298 -4.2887 21 7 4.2485 -0.8340 -4.6962 22 14 6.1541 -2.2698 -3.2991 23 1 7.3064 -2.4177 -4.2241 24 1 6.3713 -1.0910 -2.4225 25 1 6.0298 -3.4915 -2.4640 26 6 2.0746 -2.8336 0.0811 27 6 1.5644 -2.0284 1.2791 28 8 2.0065 -0.6742 1.1664 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5143 0.8897 31 1 -0.3633 0.5133 -0.8903 32 1 3.1298 -0.6875 -1.2708 33 1 1.6431 -0.2362 -2.1404 34 1 3.2333 -2.9707 -2.3390 35 1 1.8669 -2.4129 -3.3340 36 1 1.1870 -4.6643 -1.6526 37 1 3.2920 -7.5918 -3.7153 38 1 5.6821 -8.0164 -4.1142 39 1 7.1878 -6.1744 -4.7415 40 1 6.3184 -3.8882 -4.9636 41 1 4.8099 -0.0719 -4.4842 42 1 1.7005 -3.8556 0.1414 43 1 3.1645 -2.8428 0.0874 44 1 1.9529 -2.4622 2.2006 45 1 0.4749 -2.0550 1.2958 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601386184.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:40 Heat of formation + Delta-G solvation = -135.085141 kcal Electronic energy + Delta-G solvation = -29385.771271 eV Core-core repulsion = 25493.463874 eV Total energy + Delta-G solvation = -3892.307397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.82755 -39.62898 -38.16768 -37.11825 -36.70220 -35.60313 -33.82344 -32.84124 -32.44415 -31.80705 -29.42058 -27.34223 -26.58483 -24.44468 -23.79593 -23.00054 -22.73110 -20.33658 -20.07932 -19.51740 -18.80246 -18.14877 -17.36134 -17.14151 -16.99107 -16.79461 -16.14940 -15.90766 -15.70677 -15.44573 -15.34183 -15.10688 -14.76087 -14.48918 -14.28883 -14.02252 -13.79010 -13.62556 -13.29144 -13.11404 -13.03086 -12.98973 -12.90993 -12.73013 -12.67418 -12.59395 -12.36486 -12.15483 -12.02726 -11.88044 -11.70464 -11.44255 -11.24444 -11.04301 -10.91254 -10.36095 -10.19958 -9.95198 -9.57316 -8.97785 -6.67888 -0.19874 0.34463 0.78268 1.22129 1.34337 1.42286 2.03788 2.33207 2.50153 2.92283 2.98873 3.34249 3.64106 3.79395 3.82808 3.89625 4.04279 4.19812 4.22300 4.30343 4.44355 4.47211 4.51677 4.58795 4.61960 4.66887 4.70612 4.77215 4.85794 4.91707 4.96354 5.03603 5.08723 5.15463 5.21741 5.22875 5.29502 5.36753 5.38966 5.53684 5.55456 5.71443 5.83859 6.09488 6.30278 6.32669 6.34842 6.54738 6.71068 8.04098 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011770 B = 0.005553 C = 0.004564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.338836 B = 5040.749251 C = 6133.024353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.089 3.911 3 H 0.107 0.893 4 C -0.141 4.141 5 C -0.095 4.095 6 H 0.092 0.908 7 C 0.138 3.862 8 N -1.104 6.104 9 S 2.722 3.278 10 O -1.002 7.002 11 O -1.006 7.006 12 C -0.785 4.785 13 C 0.003 3.997 14 C -0.251 4.251 15 C -0.044 4.044 16 C -0.258 4.258 17 C 0.146 3.854 18 C -0.483 4.483 19 H 0.108 0.892 20 C 0.076 3.924 21 N -0.798 5.798 22 Si 0.932 3.068 23 H -0.261 1.261 24 H -0.270 1.270 25 H -0.249 1.249 26 C -0.152 4.152 27 C 0.057 3.943 28 O -0.396 6.396 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.066 0.934 36 H 0.420 0.580 37 H 0.130 0.870 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.106 0.894 41 H 0.301 0.699 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.106 0.894 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.207 0.657 11.316 11.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.031 3.969 3 H 0.124 0.876 4 C -0.179 4.179 5 C -0.115 4.115 6 H 0.110 0.890 7 C 0.012 3.988 8 N -0.866 5.866 9 S 2.818 3.182 10 O -0.992 6.992 11 O -0.997 6.997 12 C -0.879 4.879 13 C -0.017 4.017 14 C -0.271 4.271 15 C -0.062 4.062 16 C -0.278 4.278 17 C 0.141 3.859 18 C -0.510 4.510 19 H 0.126 0.874 20 C -0.146 4.146 21 N -0.420 5.420 22 Si 0.755 3.245 23 H -0.186 1.186 24 H -0.196 1.196 25 H -0.173 1.173 26 C -0.190 4.190 27 C -0.019 4.019 28 O -0.315 6.315 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.256 0.744 37 H 0.148 0.852 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.123 0.877 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.077 0.923 44 H 0.124 0.876 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.769 0.871 10.732 11.117 hybrid contribution 1.269 -0.046 -0.077 1.272 sum -1.500 0.825 10.655 10.791 Atomic orbital electron populations 1.22417 0.94957 1.03200 1.03290 1.22207 0.94552 0.96206 0.83905 0.87552 1.22126 1.01057 0.95483 0.99281 1.21484 1.01305 0.94586 0.94084 0.89012 1.21614 0.97906 0.80309 0.98993 1.55140 1.74958 1.25313 1.31150 1.00287 0.73865 0.71304 0.72769 1.93464 1.81458 1.69019 1.55277 1.93433 1.77885 1.43145 1.85195 1.30161 1.24613 1.01744 1.31333 1.20744 0.96148 0.94062 0.90722 1.20997 0.93506 0.99501 1.13104 1.21288 0.99621 0.92464 0.92818 1.21385 0.96324 0.97472 1.12599 1.17294 0.91760 0.91818 0.85035 1.20337 1.02987 0.89379 1.38333 0.87408 1.26504 0.99932 0.94103 0.94018 1.69666 1.38336 1.01132 1.32870 0.85989 0.79127 0.79406 0.79970 1.18610 1.19638 1.17258 1.22294 1.01545 1.00621 0.94564 1.22708 0.99639 0.81408 0.98137 1.87941 1.74449 1.25668 1.43470 0.91553 0.91052 0.90885 0.92867 0.90854 0.92299 0.91608 0.74367 0.85183 0.84497 0.84710 0.87670 0.88813 0.89218 0.92343 0.87589 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.43 8.65 71.98 0.62 -2.80 16 2 C 0.09 2.07 3.91 30.62 0.12 2.19 16 3 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 4 C -0.14 -4.00 4.93 30.68 0.15 -3.85 16 5 C -0.09 -2.65 2.07 -10.67 -0.02 -2.67 16 6 H 0.09 2.28 6.62 -2.39 -0.02 2.26 16 7 C 0.14 5.00 3.72 86.38 0.32 5.32 16 8 N -1.10 -38.19 5.89 -187.49 -1.10 -39.30 16 9 S 2.72 115.59 5.44 -56.49 -0.31 115.28 16 10 O -1.00 -49.90 14.96 -128.00 -1.92 -51.82 16 11 O -1.01 -43.14 16.97 -128.00 -2.17 -45.31 16 12 C -0.78 -35.38 5.95 22.73 0.14 -35.24 16 13 C 0.00 0.12 9.54 22.22 0.21 0.33 16 14 C -0.25 -9.34 10.05 22.46 0.23 -9.11 16 15 C -0.04 -1.68 10.02 22.22 0.22 -1.45 16 16 C -0.26 -11.52 7.12 22.73 0.16 -11.36 16 17 C 0.15 6.99 5.03 -21.29 -0.11 6.89 16 18 C -0.48 -24.13 5.25 23.46 0.12 -24.01 16 19 H 0.11 5.94 4.45 -2.91 -0.01 5.93 16 20 C 0.08 3.57 4.71 85.26 0.40 3.97 16 21 N -0.80 -37.66 13.93 21.83 0.30 -37.35 16 22 Si 0.93 37.85 24.03 68.60 1.65 39.50 16 23 H -0.26 -10.26 6.72 99.48 0.67 -9.59 16 24 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 25 H -0.25 -10.41 6.83 99.48 0.68 -9.74 16 26 C -0.15 -3.67 5.26 30.69 0.16 -3.51 16 27 C 0.06 1.18 6.51 72.02 0.47 1.65 16 28 O -0.40 -9.97 10.60 -148.98 -1.58 -11.54 16 29 H 0.07 1.22 4.98 -2.38 -0.01 1.21 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.06 2.35 5.72 -2.39 -0.01 2.34 16 35 H 0.07 2.79 6.07 -2.39 -0.01 2.78 16 36 H 0.42 11.43 7.45 -96.74 -0.72 10.71 16 37 H 0.13 4.76 7.32 -2.91 -0.02 4.74 16 38 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 39 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 40 H 0.11 4.60 4.82 -2.92 -0.01 4.59 16 41 H 0.30 12.70 8.30 -92.71 -0.77 11.93 16 42 H 0.09 1.83 6.99 -2.39 -0.02 1.82 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.11 1.83 8.14 -2.38 -0.02 1.81 16 45 H 0.07 1.19 6.34 -2.39 -0.02 1.17 16 Total: -1.00 -61.84 347.36 -1.68 -63.52 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: 0.25 Total: 40.68 kcal Atomic # 6 Polarization: -76.86 SS G_CDS: 3.20 Total: -73.66 kcal Atomic # 7 Polarization: -75.85 SS G_CDS: -0.80 Total: -76.65 kcal Atomic # 8 Polarization: -103.00 SS G_CDS: -5.67 Total: -108.67 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 1.65 Total: 39.50 kcal Atomic # 16 Polarization: 115.59 SS G_CDS: -0.31 Total: 115.28 kcal Total: -61.84 -1.68 -63.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386184.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.566 kcal (2) G-P(sol) polarization free energy of solvation -61.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds