Wall clock time and date at job start Tue Mar 31 2020 23:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.48251 * 2 1 4 4 C 1.53102 * 109.48695 * 119.94348 * 2 1 3 5 5 C 1.53177 * 109.16068 * 177.50276 * 4 2 1 6 6 H 1.09001 * 109.54338 * 63.06609 * 5 4 2 7 7 C 1.52998 * 109.54675 * 183.24043 * 5 4 2 8 8 N 1.46496 * 109.47349 * 184.81960 * 7 5 4 9 9 S 1.65602 * 120.00123 * 165.87838 * 8 7 5 10 10 O 1.42108 * 106.39883 * 309.21139 * 9 8 7 11 11 O 1.42096 * 106.40396 * 176.29586 * 9 8 7 12 12 C 1.76198 * 107.22074 * 62.75030 * 9 8 7 13 13 C 1.37633 * 120.12812 * 245.83896 * 12 9 8 14 14 C 1.38615 * 120.24876 * 179.97438 * 13 12 9 15 15 C 1.38659 * 120.49851 * 359.97438 * 14 13 12 16 16 C 1.37592 * 120.25083 * 0.02562 * 15 14 13 17 17 C 1.40694 * 120.12564 * 65.81047 * 12 9 8 18 18 C 1.41399 * 120.24375 * 0.04753 * 17 12 9 19 19 H 1.08003 * 119.99967 * 331.62175 * 18 17 12 20 20 C 1.39947 * 119.99923 * 151.62332 * 18 17 12 21 21 N 1.30827 * 120.00068 * 348.34470 * 20 18 17 22 22 Si 1.86805 * 119.99851 * 168.34536 * 20 18 17 23 23 H 1.48505 * 109.46822 * 90.00073 * 22 20 18 24 24 H 1.48508 * 109.46809 * 209.99630 * 22 20 18 25 25 H 1.48493 * 109.46917 * 329.99973 * 22 20 18 26 26 C 1.53180 * 109.11034 * 303.15589 * 5 4 2 27 27 C 1.53096 * 109.16220 * 56.93273 * 26 5 4 28 28 O 1.42900 * 109.41475 * 302.39380 * 27 26 5 29 29 H 1.09007 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46991 * 300.02258 * 1 2 3 31 31 H 1.08989 * 109.47416 * 60.02423 * 1 2 3 32 32 H 1.09002 * 109.44991 * 57.64622 * 4 2 1 33 33 H 1.09004 * 109.59928 * 297.45284 * 4 2 1 34 34 H 1.09003 * 109.46540 * 64.82459 * 7 5 4 35 35 H 1.08992 * 109.47194 * 304.82700 * 7 5 4 36 36 H 0.97007 * 119.99962 * 345.88483 * 8 7 5 37 37 H 1.08001 * 119.87894 * 359.95262 * 13 12 9 38 38 H 1.07997 * 119.75139 * 179.97438 * 14 13 12 39 39 H 1.07998 * 119.87521 * 180.27916 * 15 14 13 40 40 H 1.08001 * 120.12960 * 179.97438 * 16 15 14 41 41 H 0.96996 * 119.99591 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.52642 * 176.84147 * 26 5 4 43 43 H 1.09004 * 109.51966 * 297.03005 * 26 5 4 44 44 H 1.09001 * 109.48139 * 62.37748 * 27 26 5 45 45 H 1.09005 * 109.47546 * 182.39871 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7204 1.2507 5 6 3.5711 -0.7709 1.2120 6 1 3.9703 0.2429 1.2415 7 6 4.0878 -1.5595 2.4170 8 7 5.5517 -1.5096 2.4420 9 16 6.3727 -1.9686 3.8050 10 8 5.7839 -1.2588 4.8862 11 8 7.7552 -1.8914 3.4858 12 6 6.0194 -3.6731 4.0776 13 6 5.3075 -4.0618 5.1895 14 6 5.0276 -5.4020 5.4062 15 6 5.4599 -6.3654 4.5075 16 6 6.1731 -5.9998 3.3891 17 6 6.4635 -4.6420 3.1592 18 6 7.1960 -4.2545 2.0135 19 1 7.0446 -3.2765 1.5810 20 6 8.1174 -5.1382 1.4401 21 7 8.4708 -6.2220 2.0819 22 14 8.8425 -4.7700 -0.2416 23 1 10.0842 -3.9714 -0.0812 24 1 9.1599 -6.0451 -0.9336 25 1 7.8598 -4.0011 -1.0467 26 6 4.0177 -1.4600 -0.0811 27 6 3.4307 -0.7091 -1.2792 28 8 2.0066 -0.6740 -1.1665 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8901 32 1 1.6432 -1.7352 1.2728 33 1 1.7164 -0.1817 2.1410 34 1 3.7610 -2.5965 2.3397 35 1 3.6936 -1.1217 3.3339 36 1 6.0402 -1.2076 1.6602 37 1 4.9658 -3.3199 5.8961 38 1 4.4687 -5.6981 6.2816 39 1 5.2323 -7.4063 4.6839 40 1 6.5092 -6.7518 2.6906 41 1 9.1097 -6.8343 1.6846 42 1 5.1059 -1.4497 -0.1424 43 1 3.6613 -2.4901 -0.0867 44 1 3.8192 0.3092 -1.2959 45 1 3.7101 -1.2199 -2.2007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601386186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:50 Heat of formation + Delta-G solvation = -124.714198 kcal Electronic energy + Delta-G solvation = -28455.415384 eV Core-core repulsion = 24563.557705 eV Total energy + Delta-G solvation = -3891.857679 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.67583 -37.60516 -36.29754 -35.93424 -34.83807 -33.90789 -32.99231 -32.24306 -30.23448 -29.56628 -28.24033 -25.72617 -25.48899 -23.40835 -21.67493 -21.50653 -21.13242 -20.16577 -18.61479 -17.72041 -16.84317 -16.44668 -16.27084 -15.76974 -15.74307 -15.34662 -14.85428 -14.41786 -14.36292 -14.21480 -13.83221 -13.32880 -13.20105 -12.99969 -12.77471 -12.63054 -12.43852 -12.22966 -11.96752 -11.88993 -11.53057 -11.29647 -11.24598 -11.18640 -11.17364 -11.08740 -11.02392 -10.91149 -10.71523 -10.62333 -10.53897 -10.27266 -9.92140 -9.49335 -9.46075 -9.43486 -8.78029 -8.04683 -7.61666 -7.04513 -4.77479 1.52899 2.32842 2.72023 2.94737 2.97560 3.10269 3.68763 3.75093 3.92244 4.39399 4.56744 4.66741 4.71943 4.79548 4.87157 5.06754 5.19245 5.27185 5.33263 5.41584 5.45362 5.50225 5.61493 5.61774 5.72253 5.79490 5.88321 5.95594 5.99831 6.03821 6.07487 6.11658 6.22893 6.32973 6.39453 6.45415 6.76022 6.94053 7.07336 7.17350 7.29366 7.47149 7.52608 7.66211 7.79868 7.87886 8.27353 8.48535 8.63748 9.88393 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.004546 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.229919 B = 6157.288324 C = 7244.923202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.087 3.913 3 H 0.055 0.945 4 C -0.145 4.145 5 C -0.095 4.095 6 H 0.077 0.923 7 C 0.131 3.869 8 N -1.122 6.122 9 S 2.700 3.300 10 O -0.999 6.999 11 O -0.965 6.965 12 C -0.775 4.775 13 C -0.003 4.003 14 C -0.250 4.250 15 C -0.077 4.077 16 C -0.158 4.158 17 C 0.187 3.813 18 C -0.444 4.444 19 H 0.087 0.913 20 C 0.080 3.920 21 N -0.776 5.776 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.256 1.256 26 C -0.154 4.154 27 C 0.063 3.937 28 O -0.382 6.382 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.409 0.591 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.125 0.875 41 H 0.287 0.713 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 7.570 -6.327 14.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.029 3.971 3 H 0.073 0.927 4 C -0.184 4.184 5 C -0.114 4.114 6 H 0.095 0.905 7 C 0.004 3.996 8 N -0.879 5.879 9 S 2.798 3.202 10 O -0.990 6.990 11 O -0.955 6.955 12 C -0.871 4.871 13 C -0.023 4.023 14 C -0.271 4.271 15 C -0.096 4.096 16 C -0.178 4.178 17 C 0.182 3.818 18 C -0.472 4.472 19 H 0.105 0.895 20 C -0.141 4.141 21 N -0.400 5.400 22 Si 0.737 3.263 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.179 1.179 26 C -0.192 4.192 27 C -0.014 4.014 28 O -0.302 6.302 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.243 0.757 37 H 0.125 0.875 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.532 7.812 -5.807 13.624 hybrid contribution 0.589 -0.596 -0.847 1.191 sum -8.943 7.216 -6.654 13.279 Atomic orbital electron populations 1.21765 0.93241 1.02988 1.02207 1.22059 0.94873 0.94887 0.85254 0.92660 1.22256 0.95131 1.02527 0.98446 1.21390 0.95322 0.99922 0.94808 0.90471 1.21150 0.79740 1.00480 0.98228 1.55679 1.14748 1.83844 1.33658 1.01078 0.72802 0.74559 0.71803 1.93444 1.79292 1.72966 1.53256 1.93545 1.30752 1.87691 1.83554 1.29840 1.28072 1.21245 1.07900 1.20249 0.92518 0.95817 0.93726 1.20490 1.11029 0.93278 1.02283 1.20903 0.96626 0.97189 0.94838 1.21515 1.00817 0.96903 0.98552 1.16997 0.85127 0.91011 0.88653 1.19825 1.17075 1.01279 1.09007 0.89549 1.25950 0.95281 0.93586 0.99260 1.69779 1.24105 1.09532 1.36548 0.86190 0.80394 0.79192 0.80504 1.18681 1.19797 1.17948 1.22287 1.01731 1.00997 0.94185 1.22573 0.80760 0.99409 0.98642 1.87913 1.21250 1.78069 1.42940 0.91730 0.91115 0.92073 0.90454 0.90520 0.91463 0.90826 0.75722 0.87472 0.88762 0.88842 0.85731 0.90139 0.90307 0.90231 0.93434 0.88889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.56 37.15 0.36 -0.86 16 2 C 0.09 0.87 3.26 -26.68 -0.09 0.79 16 3 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.15 -1.50 4.71 -26.59 -0.13 -1.63 16 5 C -0.09 -1.11 2.37 -90.44 -0.21 -1.32 16 6 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 7 C 0.13 1.90 5.59 -4.05 -0.02 1.87 16 8 N -1.12 -18.91 5.04 -10.62 -0.05 -18.96 16 9 S 2.70 58.29 4.96 -107.50 -0.53 57.75 16 10 O -1.00 -22.56 16.53 -57.17 -0.95 -23.50 16 11 O -0.97 -23.79 16.49 -57.17 -0.94 -24.73 16 12 C -0.78 -18.32 5.90 -38.88 -0.23 -18.55 16 13 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 14 C -0.25 -5.44 10.05 -39.29 -0.39 -5.84 16 15 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 16 C -0.16 -3.87 8.66 -38.87 -0.34 -4.21 16 17 C 0.19 4.69 5.55 -106.82 -0.59 4.10 16 18 C -0.44 -10.91 7.63 -37.74 -0.29 -11.20 16 19 H 0.09 1.97 5.83 -52.48 -0.31 1.66 16 20 C 0.08 1.91 5.24 -17.34 -0.09 1.82 16 21 N -0.78 -18.93 10.86 55.55 0.60 -18.33 16 22 Si 0.91 17.70 29.58 -169.99 -5.03 12.67 16 23 H -0.26 -5.17 7.11 56.52 0.40 -4.76 16 24 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 25 H -0.26 -4.71 7.11 56.52 0.40 -4.30 16 26 C -0.15 -1.83 5.26 -26.59 -0.14 -1.97 16 27 C 0.06 0.67 6.84 37.21 0.25 0.93 16 28 O -0.38 -4.59 10.41 -35.23 -0.37 -4.95 16 29 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.07 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.49 8.14 -51.94 -0.42 0.07 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.05 7.82 -51.93 -0.41 0.65 16 36 H 0.41 6.13 7.33 -34.47 -0.25 5.88 16 37 H 0.11 2.24 7.32 -52.49 -0.38 1.85 16 38 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 39 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 40 H 0.12 3.08 6.23 -52.49 -0.33 2.75 16 41 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 42 H 0.08 0.93 7.02 -51.93 -0.36 0.57 16 43 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 370.89 15.07 5.59 5.59 Total: -1.00 -30.53 370.89 -11.03 -41.57 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -6.67 Total: 11.54 kcal Atomic # 6 Polarization: -35.94 SS G_CDS: -2.69 Total: -38.63 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.55 Total: -37.29 kcal Atomic # 8 Polarization: -50.94 SS G_CDS: -2.25 Total: -53.19 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 58.29 SS G_CDS: -0.53 Total: 57.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.53 -11.03 -41.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.149 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds