Wall clock time and date at job start Tue Mar 31 2020 23:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.48251 * 2 1 4 4 C 1.53102 * 109.48695 * 119.94348 * 2 1 3 5 5 C 1.53177 * 109.16068 * 177.50276 * 4 2 1 6 6 H 1.09001 * 109.54338 * 63.06609 * 5 4 2 7 7 C 1.52998 * 109.54675 * 183.24043 * 5 4 2 8 8 N 1.46496 * 109.47349 * 184.81960 * 7 5 4 9 9 S 1.65602 * 120.00123 * 165.87838 * 8 7 5 10 10 O 1.42108 * 106.39883 * 309.21139 * 9 8 7 11 11 O 1.42096 * 106.40396 * 176.29586 * 9 8 7 12 12 C 1.76198 * 107.22074 * 62.75030 * 9 8 7 13 13 C 1.37633 * 120.12812 * 245.83896 * 12 9 8 14 14 C 1.38615 * 120.24876 * 179.97438 * 13 12 9 15 15 C 1.38659 * 120.49851 * 359.97438 * 14 13 12 16 16 C 1.37592 * 120.25083 * 0.02562 * 15 14 13 17 17 C 1.40694 * 120.12564 * 65.81047 * 12 9 8 18 18 C 1.41399 * 120.24375 * 0.04753 * 17 12 9 19 19 H 1.08003 * 119.99967 * 331.62175 * 18 17 12 20 20 C 1.39947 * 119.99923 * 151.62332 * 18 17 12 21 21 N 1.30827 * 120.00068 * 348.34470 * 20 18 17 22 22 Si 1.86805 * 119.99851 * 168.34536 * 20 18 17 23 23 H 1.48505 * 109.46822 * 90.00073 * 22 20 18 24 24 H 1.48508 * 109.46809 * 209.99630 * 22 20 18 25 25 H 1.48493 * 109.46917 * 329.99973 * 22 20 18 26 26 C 1.53180 * 109.11034 * 303.15589 * 5 4 2 27 27 C 1.53096 * 109.16220 * 56.93273 * 26 5 4 28 28 O 1.42900 * 109.41475 * 302.39380 * 27 26 5 29 29 H 1.09007 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.46991 * 300.02258 * 1 2 3 31 31 H 1.08989 * 109.47416 * 60.02423 * 1 2 3 32 32 H 1.09002 * 109.44991 * 57.64622 * 4 2 1 33 33 H 1.09004 * 109.59928 * 297.45284 * 4 2 1 34 34 H 1.09003 * 109.46540 * 64.82459 * 7 5 4 35 35 H 1.08992 * 109.47194 * 304.82700 * 7 5 4 36 36 H 0.97007 * 119.99962 * 345.88483 * 8 7 5 37 37 H 1.08001 * 119.87894 * 359.95262 * 13 12 9 38 38 H 1.07997 * 119.75139 * 179.97438 * 14 13 12 39 39 H 1.07998 * 119.87521 * 180.27916 * 15 14 13 40 40 H 1.08001 * 120.12960 * 179.97438 * 16 15 14 41 41 H 0.96996 * 119.99591 * 180.02562 * 21 20 18 42 42 H 1.08998 * 109.52642 * 176.84147 * 26 5 4 43 43 H 1.09004 * 109.51966 * 297.03005 * 26 5 4 44 44 H 1.09001 * 109.48139 * 62.37748 * 27 26 5 45 45 H 1.09005 * 109.47546 * 182.39871 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0407 -0.7204 1.2507 5 6 3.5711 -0.7709 1.2120 6 1 3.9703 0.2429 1.2415 7 6 4.0878 -1.5595 2.4170 8 7 5.5517 -1.5096 2.4420 9 16 6.3727 -1.9686 3.8050 10 8 5.7839 -1.2588 4.8862 11 8 7.7552 -1.8914 3.4858 12 6 6.0194 -3.6731 4.0776 13 6 5.3075 -4.0618 5.1895 14 6 5.0276 -5.4020 5.4062 15 6 5.4599 -6.3654 4.5075 16 6 6.1731 -5.9998 3.3891 17 6 6.4635 -4.6420 3.1592 18 6 7.1960 -4.2545 2.0135 19 1 7.0446 -3.2765 1.5810 20 6 8.1174 -5.1382 1.4401 21 7 8.4708 -6.2220 2.0819 22 14 8.8425 -4.7700 -0.2416 23 1 10.0842 -3.9714 -0.0812 24 1 9.1599 -6.0451 -0.9336 25 1 7.8598 -4.0011 -1.0467 26 6 4.0177 -1.4600 -0.0811 27 6 3.4307 -0.7091 -1.2792 28 8 2.0066 -0.6740 -1.1665 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5142 0.8898 31 1 -0.3634 0.5134 -0.8901 32 1 1.6432 -1.7352 1.2728 33 1 1.7164 -0.1817 2.1410 34 1 3.7610 -2.5965 2.3397 35 1 3.6936 -1.1217 3.3339 36 1 6.0402 -1.2076 1.6602 37 1 4.9658 -3.3199 5.8961 38 1 4.4687 -5.6981 6.2816 39 1 5.2323 -7.4063 4.6839 40 1 6.5092 -6.7518 2.6906 41 1 9.1097 -6.8343 1.6846 42 1 5.1059 -1.4497 -0.1424 43 1 3.6613 -2.4901 -0.0867 44 1 3.8192 0.3092 -1.2959 45 1 3.7101 -1.2199 -2.2007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601386186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:49 Heat of formation + Delta-G solvation = -144.127382 kcal Electronic energy + Delta-G solvation = -28456.257203 eV Core-core repulsion = 24563.557705 eV Total energy + Delta-G solvation = -3892.699498 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.55018 -39.37933 -38.05009 -37.12547 -36.66501 -35.67176 -33.86114 -33.30640 -32.01674 -31.35499 -29.12053 -27.36908 -26.65046 -24.32635 -23.44206 -22.95326 -22.35472 -21.10095 -20.23470 -19.50682 -18.48297 -17.91379 -17.30022 -17.21496 -16.96219 -16.70456 -16.05081 -16.02463 -15.59763 -15.29361 -15.08226 -14.96546 -14.81430 -14.47297 -14.16711 -13.71162 -13.45896 -13.35074 -13.23982 -13.07350 -12.99644 -12.95644 -12.86410 -12.79741 -12.77107 -12.57344 -12.42209 -12.14262 -12.00703 -11.89395 -11.65851 -11.53726 -11.19165 -11.15864 -11.10258 -10.37370 -10.23522 -9.84010 -9.43304 -8.79464 -6.61100 -0.16265 0.53220 0.97374 1.36049 1.48038 1.52274 2.15038 2.35217 2.63649 2.91882 2.98449 3.47414 3.62799 3.75735 3.86523 3.91319 4.04881 4.29478 4.32638 4.36077 4.40287 4.49384 4.50726 4.63875 4.69926 4.73372 4.74896 4.80110 4.86071 4.95336 4.98521 5.07121 5.12169 5.15014 5.16376 5.26374 5.31330 5.36734 5.47352 5.52054 5.70606 5.82487 6.00514 6.08032 6.22190 6.37765 6.47494 6.67582 6.83709 8.16498 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010340 B = 0.004546 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.229919 B = 6157.288324 C = 7244.923202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.083 3.917 3 H 0.067 0.933 4 C -0.143 4.143 5 C -0.088 4.088 6 H 0.091 0.909 7 C 0.126 3.874 8 N -1.109 6.109 9 S 2.720 3.280 10 O -1.009 7.009 11 O -0.999 6.999 12 C -0.793 4.793 13 C -0.016 4.016 14 C -0.251 4.251 15 C -0.076 4.076 16 C -0.186 4.186 17 C 0.162 3.838 18 C -0.471 4.471 19 H 0.094 0.906 20 C 0.038 3.962 21 N -0.809 5.809 22 Si 0.973 3.027 23 H -0.267 1.267 24 H -0.261 1.261 25 H -0.240 1.240 26 C -0.156 4.156 27 C 0.064 3.936 28 O -0.401 6.401 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.092 0.908 34 H 0.057 0.943 35 H 0.078 0.922 36 H 0.419 0.581 37 H 0.122 0.878 38 H 0.127 0.873 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.295 0.705 42 H 0.077 0.923 43 H 0.061 0.939 44 H 0.063 0.937 45 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.116 8.692 -6.985 15.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.025 3.975 3 H 0.085 0.915 4 C -0.181 4.181 5 C -0.108 4.108 6 H 0.109 0.891 7 C 0.000 4.000 8 N -0.870 5.870 9 S 2.816 3.184 10 O -1.000 7.000 11 O -0.990 6.990 12 C -0.886 4.886 13 C -0.036 4.036 14 C -0.271 4.271 15 C -0.095 4.095 16 C -0.206 4.206 17 C 0.158 3.842 18 C -0.499 4.499 19 H 0.112 0.888 20 C -0.180 4.180 21 N -0.433 5.433 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.185 1.185 25 H -0.163 1.163 26 C -0.193 4.193 27 C -0.013 4.013 28 O -0.320 6.320 29 H 0.075 0.925 30 H 0.107 0.893 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.255 0.745 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.655 8.914 -6.453 15.318 hybrid contribution 0.852 -0.948 -0.539 1.384 sum -9.803 7.966 -6.992 14.438 Atomic orbital electron populations 1.21782 0.92094 1.02848 1.03287 1.22225 0.95843 0.95113 0.84276 0.91500 1.22258 0.93854 1.02429 0.99570 1.21366 0.96338 0.99931 0.93166 0.89076 1.21353 0.78017 1.00624 1.00009 1.55274 1.15816 1.83091 1.32790 1.00338 0.72046 0.73701 0.72283 1.93421 1.79320 1.72802 1.54427 1.93491 1.33317 1.87900 1.84274 1.30158 1.27940 1.22380 1.08170 1.20577 0.92449 0.96829 0.93725 1.20890 1.10463 0.92822 1.02964 1.21247 0.95390 0.98912 0.93967 1.21576 1.02513 0.96809 0.99725 1.17311 0.85793 0.91672 0.89445 1.20130 1.17925 1.02179 1.09706 0.88776 1.26820 0.95327 0.93243 1.02560 1.69824 1.24892 1.10465 1.38108 0.85318 0.79507 0.79561 0.76365 1.19179 1.18508 1.16297 1.22285 1.01675 1.00315 0.95069 1.22619 0.80336 1.00125 0.98206 1.87900 1.21803 1.78508 1.43828 0.92484 0.89316 0.91740 0.91404 0.88937 0.92509 0.90347 0.74478 0.85973 0.85539 0.86088 0.86833 0.89438 0.90453 0.91972 0.91906 0.88247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.56 71.98 0.69 -1.41 16 2 C 0.08 1.48 3.26 30.63 0.10 1.58 16 3 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.14 -2.70 4.71 30.69 0.14 -2.55 16 5 C -0.09 -1.92 2.37 -10.67 -0.03 -1.94 16 6 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 7 C 0.13 3.54 5.59 86.38 0.48 4.03 16 8 N -1.11 -36.73 5.04 -187.51 -0.94 -37.67 16 9 S 2.72 117.32 4.96 -56.49 -0.28 117.04 16 10 O -1.01 -44.90 16.53 -128.00 -2.12 -47.02 16 11 O -1.00 -49.80 16.49 -128.00 -2.11 -51.91 16 12 C -0.79 -37.72 5.90 22.73 0.13 -37.59 16 13 C -0.02 -0.72 9.53 22.22 0.21 -0.51 16 14 C -0.25 -10.57 10.05 22.46 0.23 -10.34 16 15 C -0.08 -3.36 10.02 22.22 0.22 -3.14 16 16 C -0.19 -9.30 8.66 22.73 0.20 -9.10 16 17 C 0.16 8.31 5.55 -21.29 -0.12 8.19 16 18 C -0.47 -23.61 7.63 23.46 0.18 -23.43 16 19 H 0.09 4.35 5.83 -2.91 -0.02 4.34 16 20 C 0.04 1.84 5.24 85.26 0.45 2.29 16 21 N -0.81 -40.29 10.86 21.83 0.24 -40.05 16 22 Si 0.97 36.02 29.58 68.60 2.03 38.05 16 23 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 24 H -0.26 -9.04 7.11 99.48 0.71 -8.34 16 25 H -0.24 -8.18 7.11 99.48 0.71 -7.47 16 26 C -0.16 -3.52 5.26 30.69 0.16 -3.36 16 27 C 0.06 1.25 6.84 72.01 0.49 1.74 16 28 O -0.40 -8.96 10.41 -148.98 -1.55 -10.51 16 29 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.09 0.97 8.14 -2.38 -0.02 0.95 16 31 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.08 2.14 7.82 -2.39 -0.02 2.12 16 36 H 0.42 12.24 7.33 -96.74 -0.71 11.54 16 37 H 0.12 4.96 7.32 -2.91 -0.02 4.94 16 38 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 39 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.11 5.81 6.23 -2.91 -0.02 5.79 16 41 H 0.29 13.17 8.30 -92.71 -0.77 12.40 16 42 H 0.08 1.74 7.02 -2.39 -0.02 1.73 16 43 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.10 1.79 8.14 -2.38 -0.02 1.78 16 Total: -1.00 -65.64 370.89 -0.90 -66.55 By element: Atomic # 1 Polarization: 40.78 SS G_CDS: 0.29 Total: 41.07 kcal Atomic # 6 Polarization: -79.09 SS G_CDS: 3.54 Total: -75.54 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -0.71 Total: -77.73 kcal Atomic # 8 Polarization: -103.66 SS G_CDS: -5.78 Total: -109.44 kcal Atomic # 14 Polarization: 36.02 SS G_CDS: 2.03 Total: 38.05 kcal Atomic # 16 Polarization: 117.32 SS G_CDS: -0.28 Total: 117.04 kcal Total: -65.64 -0.90 -66.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601386186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.582 kcal (2) G-P(sol) polarization free energy of solvation -65.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds