Wall clock time and date at job start Tue Mar 31 2020 23:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.68291 * 2 1 4 4 C 1.53296 * 109.71606 * 120.53921 * 2 1 3 5 5 O 1.42958 * 109.22253 * 172.04120 * 4 2 1 6 6 C 1.42958 * 114.17019 * 297.42148 * 5 4 2 7 7 C 1.53006 * 109.51472 * 182.50943 * 6 5 4 8 8 C 1.53002 * 109.50921 * 302.60548 * 6 5 4 9 9 C 1.52878 * 109.29926 * 62.44995 * 6 5 4 10 10 N 1.47149 * 109.68148 * 239.48752 * 2 1 3 11 11 S 1.65600 * 120.98283 * 9.68003 * 10 2 1 12 12 O 1.42094 * 106.40052 * 3.45585 * 11 10 2 13 13 O 1.42100 * 106.40028 * 230.54126 * 11 10 2 14 14 C 1.76198 * 107.22032 * 116.99924 * 11 10 2 15 15 C 1.37635 * 120.12942 * 116.14810 * 14 11 10 16 16 C 1.38608 * 120.25194 * 180.02562 * 15 14 11 17 17 C 1.38658 * 120.50002 * 0.02600 * 16 15 14 18 18 C 1.37604 * 120.24762 * 359.66853 * 17 16 15 19 19 C 1.40697 * 120.12449 * 296.16893 * 14 11 10 20 20 C 1.41392 * 120.24786 * 359.97438 * 19 14 11 21 21 H 1.08007 * 119.99956 * 321.29550 * 20 19 14 22 22 C 1.39949 * 120.00155 * 141.29040 * 20 19 14 23 23 N 1.30820 * 119.99738 * 170.67542 * 22 20 19 24 24 Si 1.86795 * 119.99778 * 350.67748 * 22 20 19 25 25 H 1.48495 * 109.47322 * 91.64389 * 24 22 20 26 26 H 1.48499 * 109.47210 * 331.64185 * 24 22 20 27 27 H 1.48498 * 109.46894 * 211.64195 * 24 22 20 28 28 H 1.08998 * 109.47106 * 166.73864 * 1 2 3 29 29 H 1.08999 * 109.46730 * 286.74345 * 1 2 3 30 30 H 1.09000 * 109.46757 * 46.73808 * 1 2 3 31 31 H 1.08996 * 109.51081 * 291.96616 * 4 2 1 32 32 H 1.08999 * 109.50785 * 52.06674 * 4 2 1 33 33 H 1.08998 * 109.47043 * 59.99547 * 7 6 5 34 34 H 1.08999 * 109.47137 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46307 * 299.99746 * 7 6 5 36 36 H 1.08999 * 109.47031 * 60.00196 * 8 6 5 37 37 H 1.09002 * 109.46900 * 180.02562 * 8 6 5 38 38 H 1.08996 * 109.47581 * 300.00219 * 8 6 5 39 39 H 1.08999 * 109.61694 * 188.11944 * 9 6 5 40 40 H 1.08991 * 109.52445 * 67.70322 * 9 6 5 41 41 H 1.08008 * 119.87661 * 0.04468 * 15 14 11 42 42 H 1.07997 * 119.75264 * 179.97438 * 16 15 14 43 43 H 1.08000 * 119.88014 * 179.97438 * 17 16 15 44 44 H 1.07993 * 120.13097 * 180.30223 * 18 17 16 45 45 H 0.96998 * 119.99640 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0472 -0.7333 1.2429 5 8 3.4644 -0.8902 1.1411 6 6 3.8869 -1.6882 0.0327 7 6 5.4093 -1.8377 0.0614 8 6 3.2360 -3.0701 0.1205 9 6 3.4631 -1.0088 -1.2696 10 7 2.0256 -0.7035 -1.1937 11 16 0.9949 -1.1447 -2.4125 12 8 -0.2848 -0.6383 -2.0587 13 8 1.2427 -2.5201 -2.6692 14 6 1.4934 -0.2708 -3.8590 15 6 1.9540 -0.9597 -4.9579 16 6 2.3473 -0.2748 -6.0970 17 6 2.2823 1.1095 -6.1435 18 6 1.8191 1.8184 -5.0589 19 6 1.4224 1.1339 -3.8950 20 6 0.9508 1.8522 -2.7722 21 1 0.1256 1.4663 -2.1919 22 6 1.5531 3.0632 -2.4127 23 7 1.0081 3.8171 -1.4929 24 14 3.1351 3.6031 -3.2464 25 1 2.8107 4.4415 -4.4283 26 1 3.8980 2.4061 -3.6829 27 1 3.9544 4.3908 -2.2906 28 1 -0.3633 -1.0002 -0.2357 29 1 -0.3633 0.2961 0.9841 30 1 -0.3633 0.7043 -0.7484 31 1 1.8082 -0.1527 2.1339 32 1 1.5754 -1.7136 1.3098 33 1 5.7096 -2.3203 0.9915 34 1 5.7306 -2.4466 -0.7837 35 1 5.8722 -0.8529 -0.0030 36 1 2.1516 -2.9630 0.0982 37 1 3.5589 -3.6781 -0.7246 38 1 3.5343 -3.5538 1.0506 39 1 3.6526 -1.6772 -2.1095 40 1 4.0281 -0.0859 -1.3996 41 1 2.0090 -2.0381 -4.9327 42 1 2.7079 -0.8234 -6.9545 43 1 2.5917 1.6329 -7.0361 44 1 1.7646 2.8963 -5.0990 45 1 1.4254 4.6566 -1.2440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601402593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:46 Heat of formation + Delta-G solvation = -75.168711 kcal Electronic energy + Delta-G solvation = -30499.725642 eV Core-core repulsion = 26610.016417 eV Total energy + Delta-G solvation = -3889.709226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.67292 -37.93935 -36.75801 -35.23942 -34.63008 -33.79608 -33.65234 -30.78138 -30.25985 -29.93182 -27.42938 -25.81382 -25.33688 -25.05695 -22.15598 -21.78468 -21.20541 -19.44482 -18.20501 -17.79600 -16.91631 -16.40043 -16.15378 -15.56827 -15.45867 -14.92340 -14.54333 -14.50386 -14.28098 -13.99652 -13.74409 -13.53342 -13.26950 -12.95700 -12.60974 -12.35533 -12.26344 -11.97455 -11.94311 -11.79867 -11.79496 -11.50205 -11.38364 -11.27703 -11.22549 -11.13776 -11.03817 -10.80228 -10.50398 -10.25847 -10.12272 -10.06328 -9.91617 -9.59321 -9.39630 -9.08756 -8.33896 -8.15837 -7.82130 -7.13689 -4.88794 1.36327 2.00756 2.45464 2.93592 3.02492 3.11755 3.67775 3.77704 3.93095 4.23643 4.57242 4.86502 4.95948 5.04950 5.08976 5.23279 5.40037 5.42939 5.56074 5.63138 5.70865 5.74179 5.77623 5.83861 5.86978 5.91608 5.98518 6.06389 6.11540 6.15628 6.19356 6.25588 6.35161 6.41077 6.57567 6.66685 6.77471 6.92415 7.01100 7.09135 7.20641 7.24558 7.39318 7.45289 7.52620 7.79560 8.21312 8.28319 8.53994 9.84040 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.006776 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.262852 B = 4131.304682 C = 4705.495649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.130 3.870 3 H 0.088 0.912 4 C 0.051 3.949 5 O -0.372 6.372 6 C 0.102 3.898 7 C -0.136 4.136 8 C -0.174 4.174 9 C 0.109 3.891 10 N -0.985 5.985 11 S 2.699 3.301 12 O -0.958 6.958 13 O -0.995 6.995 14 C -0.764 4.764 15 C 0.010 3.990 16 C -0.251 4.251 17 C -0.048 4.048 18 C -0.227 4.227 19 C 0.170 3.830 20 C -0.467 4.467 21 H 0.133 0.867 22 C 0.094 3.906 23 N -0.786 5.786 24 Si 0.898 3.102 25 H -0.267 1.267 26 H -0.243 1.243 27 H -0.285 1.285 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.114 0.886 31 H 0.099 0.901 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.113 0.887 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.108 0.892 45 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.014 -5.828 3.426 9.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.024 3.976 3 H 0.106 0.894 4 C -0.027 4.027 5 O -0.291 6.291 6 C 0.061 3.939 7 C -0.194 4.194 8 C -0.232 4.232 9 C -0.018 4.018 10 N -0.822 5.822 11 S 2.799 3.201 12 O -0.949 6.949 13 O -0.986 6.986 14 C -0.858 4.858 15 C -0.010 4.010 16 C -0.271 4.271 17 C -0.067 4.067 18 C -0.246 4.246 19 C 0.165 3.835 20 C -0.494 4.494 21 H 0.150 0.850 22 C -0.128 4.128 23 N -0.409 5.409 24 Si 0.723 3.277 25 H -0.193 1.193 26 H -0.166 1.166 27 H -0.211 1.211 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.132 0.868 31 H 0.117 0.883 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.091 0.909 41 H 0.131 0.869 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.125 0.875 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.380 -6.127 3.850 9.017 hybrid contribution 0.939 0.996 -1.133 1.777 sum 6.320 -5.131 2.717 8.582 Atomic orbital electron populations 1.22708 0.91782 1.05363 1.02407 1.21632 0.95612 0.96825 0.83520 0.89386 1.23113 0.81580 0.99924 0.98127 1.87926 1.22066 1.71521 1.47593 1.21706 0.95035 0.90364 0.86837 1.21722 0.92357 1.02741 1.02551 1.22365 1.02050 0.96445 1.02329 1.21821 0.81715 1.00408 0.97842 1.57600 1.17909 1.73828 1.32903 1.01367 0.73661 0.72587 0.72530 1.93698 1.39403 1.80071 1.81712 1.93450 1.86287 1.33040 1.85802 1.30040 1.31032 1.06264 1.18447 1.20433 0.90561 0.98023 0.92009 1.20550 1.13395 0.94077 0.99061 1.20890 0.94632 0.94359 0.96812 1.21350 1.09867 0.98732 0.94688 1.17147 0.84889 0.89454 0.92046 1.20321 1.15938 1.03142 1.10030 0.84967 1.26063 0.98632 0.94278 0.93814 1.69615 1.36843 1.10114 1.24289 0.86495 0.81782 0.80403 0.78996 1.19283 1.16570 1.21139 0.91807 0.93317 0.86813 0.88274 0.92759 0.91718 0.90943 0.91631 0.91791 0.91142 0.92211 0.89536 0.90868 0.86892 0.88003 0.88190 0.87454 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 7.52 37.16 0.28 -2.75 16 2 C 0.13 2.32 3.62 -67.42 -0.24 2.07 16 3 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 4 C 0.05 0.76 5.87 37.31 0.22 0.98 16 5 O -0.37 -5.82 10.23 -35.23 -0.36 -6.18 16 6 C 0.10 1.47 1.11 -90.68 -0.10 1.37 16 7 C -0.14 -1.57 8.85 37.16 0.33 -1.24 16 8 C -0.17 -2.41 8.08 37.16 0.30 -2.11 16 9 C 0.11 1.80 5.31 -3.75 -0.02 1.78 16 10 N -0.99 -18.37 2.69 -106.27 -0.29 -18.66 16 11 S 2.70 57.08 4.54 -107.50 -0.49 56.60 16 12 O -0.96 -21.82 10.47 -57.18 -0.60 -22.42 16 13 O -1.00 -21.58 16.59 -57.18 -0.95 -22.53 16 14 C -0.76 -17.24 5.93 -38.87 -0.23 -17.47 16 15 C 0.01 0.20 9.53 -39.66 -0.38 -0.18 16 16 C -0.25 -4.97 10.05 -39.29 -0.39 -5.37 16 17 C -0.05 -0.98 10.02 -39.66 -0.40 -1.38 16 18 C -0.23 -5.13 7.04 -38.87 -0.27 -5.41 16 19 C 0.17 4.05 4.94 -106.82 -0.53 3.52 16 20 C -0.47 -11.44 8.43 -37.74 -0.32 -11.76 16 21 H 0.13 3.41 4.02 -52.48 -0.21 3.20 16 22 C 0.09 2.23 5.47 -17.34 -0.09 2.13 16 23 N -0.79 -18.78 13.93 55.55 0.77 -18.01 16 24 Si 0.90 19.04 24.57 -169.99 -4.18 14.86 16 25 H -0.27 -5.54 6.76 56.52 0.38 -5.16 16 26 H -0.24 -5.26 6.80 56.52 0.38 -4.88 16 27 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 28 H 0.06 1.18 6.27 -51.93 -0.33 0.85 16 29 H 0.05 0.76 8.09 -51.93 -0.42 0.34 16 30 H 0.11 2.46 4.45 -51.93 -0.23 2.23 16 31 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.05 0.77 6.25 -51.93 -0.32 0.45 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.97 6.12 -51.93 -0.32 0.66 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.09 1.36 7.71 -51.93 -0.40 0.96 16 40 H 0.07 1.22 8.13 -51.93 -0.42 0.79 16 41 H 0.11 2.17 7.33 -52.48 -0.38 1.79 16 42 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 43 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.11 2.37 5.26 -52.49 -0.28 2.10 16 45 H 0.29 6.31 8.30 -40.82 -0.34 5.97 16 LS Contribution 350.50 15.07 5.28 5.28 Total: -1.00 -27.65 350.50 -8.95 -36.59 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -6.29 Total: 10.27 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -1.85 Total: -35.81 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.49 Total: -36.66 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -1.91 Total: -51.13 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.18 Total: 14.86 kcal Atomic # 16 Polarization: 57.08 SS G_CDS: -0.49 Total: 56.60 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -27.65 -8.95 -36.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601402593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.576 kcal (2) G-P(sol) polarization free energy of solvation -27.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds