Wall clock time and date at job start Tue Mar 31 2020 23:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.68291 * 2 1 4 4 C 1.53296 * 109.71606 * 120.53921 * 2 1 3 5 5 O 1.42958 * 109.22253 * 172.04120 * 4 2 1 6 6 C 1.42958 * 114.17019 * 297.42148 * 5 4 2 7 7 C 1.53006 * 109.51472 * 182.50943 * 6 5 4 8 8 C 1.53002 * 109.50921 * 302.60548 * 6 5 4 9 9 C 1.52878 * 109.29926 * 62.44995 * 6 5 4 10 10 N 1.47149 * 109.68148 * 239.48752 * 2 1 3 11 11 S 1.65600 * 120.98283 * 9.68003 * 10 2 1 12 12 O 1.42094 * 106.40052 * 3.45585 * 11 10 2 13 13 O 1.42100 * 106.40028 * 230.54126 * 11 10 2 14 14 C 1.76198 * 107.22032 * 116.99924 * 11 10 2 15 15 C 1.37635 * 120.12942 * 116.14810 * 14 11 10 16 16 C 1.38608 * 120.25194 * 180.02562 * 15 14 11 17 17 C 1.38658 * 120.50002 * 0.02600 * 16 15 14 18 18 C 1.37604 * 120.24762 * 359.66853 * 17 16 15 19 19 C 1.40697 * 120.12449 * 296.16893 * 14 11 10 20 20 C 1.41392 * 120.24786 * 359.97438 * 19 14 11 21 21 H 1.08007 * 119.99956 * 321.29550 * 20 19 14 22 22 C 1.39949 * 120.00155 * 141.29040 * 20 19 14 23 23 N 1.30820 * 119.99738 * 170.67542 * 22 20 19 24 24 Si 1.86795 * 119.99778 * 350.67748 * 22 20 19 25 25 H 1.48495 * 109.47322 * 91.64389 * 24 22 20 26 26 H 1.48499 * 109.47210 * 331.64185 * 24 22 20 27 27 H 1.48498 * 109.46894 * 211.64195 * 24 22 20 28 28 H 1.08998 * 109.47106 * 166.73864 * 1 2 3 29 29 H 1.08999 * 109.46730 * 286.74345 * 1 2 3 30 30 H 1.09000 * 109.46757 * 46.73808 * 1 2 3 31 31 H 1.08996 * 109.51081 * 291.96616 * 4 2 1 32 32 H 1.08999 * 109.50785 * 52.06674 * 4 2 1 33 33 H 1.08998 * 109.47043 * 59.99547 * 7 6 5 34 34 H 1.08999 * 109.47137 * 179.97438 * 7 6 5 35 35 H 1.09001 * 109.46307 * 299.99746 * 7 6 5 36 36 H 1.08999 * 109.47031 * 60.00196 * 8 6 5 37 37 H 1.09002 * 109.46900 * 180.02562 * 8 6 5 38 38 H 1.08996 * 109.47581 * 300.00219 * 8 6 5 39 39 H 1.08999 * 109.61694 * 188.11944 * 9 6 5 40 40 H 1.08991 * 109.52445 * 67.70322 * 9 6 5 41 41 H 1.08008 * 119.87661 * 0.04468 * 15 14 11 42 42 H 1.07997 * 119.75264 * 179.97438 * 16 15 14 43 43 H 1.08000 * 119.88014 * 179.97438 * 17 16 15 44 44 H 1.07993 * 120.13097 * 180.30223 * 18 17 16 45 45 H 0.96998 * 119.99640 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8971 1.0264 0.0000 4 6 2.0472 -0.7333 1.2429 5 8 3.4644 -0.8902 1.1411 6 6 3.8869 -1.6882 0.0327 7 6 5.4093 -1.8377 0.0614 8 6 3.2360 -3.0701 0.1205 9 6 3.4631 -1.0088 -1.2696 10 7 2.0256 -0.7035 -1.1937 11 16 0.9949 -1.1447 -2.4125 12 8 -0.2848 -0.6383 -2.0587 13 8 1.2427 -2.5201 -2.6692 14 6 1.4934 -0.2708 -3.8590 15 6 1.9540 -0.9597 -4.9579 16 6 2.3473 -0.2748 -6.0970 17 6 2.2823 1.1095 -6.1435 18 6 1.8191 1.8184 -5.0589 19 6 1.4224 1.1339 -3.8950 20 6 0.9508 1.8522 -2.7722 21 1 0.1256 1.4663 -2.1919 22 6 1.5531 3.0632 -2.4127 23 7 1.0081 3.8171 -1.4929 24 14 3.1351 3.6031 -3.2464 25 1 2.8107 4.4415 -4.4283 26 1 3.8980 2.4061 -3.6829 27 1 3.9544 4.3908 -2.2906 28 1 -0.3633 -1.0002 -0.2357 29 1 -0.3633 0.2961 0.9841 30 1 -0.3633 0.7043 -0.7484 31 1 1.8082 -0.1527 2.1339 32 1 1.5754 -1.7136 1.3098 33 1 5.7096 -2.3203 0.9915 34 1 5.7306 -2.4466 -0.7837 35 1 5.8722 -0.8529 -0.0030 36 1 2.1516 -2.9630 0.0982 37 1 3.5589 -3.6781 -0.7246 38 1 3.5343 -3.5538 1.0506 39 1 3.6526 -1.6772 -2.1095 40 1 4.0281 -0.0859 -1.3996 41 1 2.0090 -2.0381 -4.9327 42 1 2.7079 -0.8234 -6.9545 43 1 2.5917 1.6329 -7.0361 44 1 1.7646 2.8963 -5.0990 45 1 1.4254 4.6566 -1.2440 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601402593.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:45 Heat of formation + Delta-G solvation = -92.490478 kcal Electronic energy + Delta-G solvation = -30500.476771 eV Core-core repulsion = 26610.016417 eV Total energy + Delta-G solvation = -3890.460354 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.91833 -39.62346 -38.42844 -36.88481 -36.11031 -35.52810 -34.85619 -32.48723 -31.88171 -31.31978 -28.47979 -27.28158 -26.89171 -26.35229 -23.78351 -23.19227 -22.90800 -20.72382 -19.79590 -19.53667 -18.42238 -17.95197 -17.51981 -17.21356 -16.89194 -16.31917 -16.03243 -15.96389 -15.65175 -15.46100 -15.37326 -15.18617 -14.74642 -14.43595 -14.12063 -14.03777 -13.53857 -13.40547 -13.25442 -13.12756 -12.99204 -12.91251 -12.82476 -12.79757 -12.70012 -12.57209 -12.44141 -12.32882 -12.10517 -11.78902 -11.75955 -11.61976 -11.28790 -11.14957 -10.96430 -10.68618 -9.99450 -9.60886 -9.50248 -8.89868 -6.69471 -0.26671 0.31495 0.74898 1.22759 1.32793 1.41577 2.05340 2.13507 2.52326 2.79113 2.89753 3.27128 3.58815 3.74742 3.78704 4.01259 4.05869 4.09626 4.19320 4.27384 4.28923 4.32155 4.57451 4.59628 4.65252 4.68478 4.70962 4.79118 4.81751 4.87800 4.91440 4.93074 5.04243 5.14501 5.22544 5.24651 5.33594 5.34007 5.41679 5.50299 5.61900 5.72112 5.76126 5.84167 6.11357 6.27156 6.40334 6.54087 6.74048 8.12618 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011547 B = 0.006776 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2424.262852 B = 4131.304682 C = 4705.495649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.132 3.868 3 H 0.065 0.935 4 C 0.056 3.944 5 O -0.379 6.379 6 C 0.100 3.900 7 C -0.133 4.133 8 C -0.173 4.173 9 C 0.099 3.901 10 N -0.983 5.983 11 S 2.706 3.294 12 O -0.981 6.981 13 O -1.002 7.002 14 C -0.778 4.778 15 C -0.006 4.006 16 C -0.240 4.240 17 C -0.045 4.045 18 C -0.251 4.251 19 C 0.153 3.847 20 C -0.490 4.490 21 H 0.110 0.890 22 C 0.069 3.931 23 N -0.818 5.818 24 Si 0.938 3.062 25 H -0.259 1.259 26 H -0.250 1.250 27 H -0.276 1.276 28 H 0.060 0.940 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.122 0.878 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.129 0.871 42 H 0.141 0.859 43 H 0.138 0.862 44 H 0.107 0.893 45 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.125 -7.045 2.757 11.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.026 3.974 3 H 0.083 0.917 4 C -0.022 4.022 5 O -0.298 6.298 6 C 0.059 3.941 7 C -0.190 4.190 8 C -0.231 4.231 9 C -0.027 4.027 10 N -0.821 5.821 11 S 2.806 3.194 12 O -0.972 6.972 13 O -0.993 6.993 14 C -0.871 4.871 15 C -0.026 4.026 16 C -0.260 4.260 17 C -0.064 4.064 18 C -0.271 4.271 19 C 0.148 3.852 20 C -0.519 4.519 21 H 0.127 0.873 22 C -0.150 4.150 23 N -0.443 5.443 24 Si 0.762 3.238 25 H -0.184 1.184 26 H -0.174 1.174 27 H -0.202 1.202 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.139 0.861 32 H 0.084 0.916 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.147 0.853 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.125 0.875 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.490 -7.343 3.164 10.956 hybrid contribution 0.269 1.257 -1.035 1.650 sum 7.758 -6.086 2.129 10.088 Atomic orbital electron populations 1.22555 0.92498 1.04111 1.02702 1.21627 0.95071 0.96132 0.84597 0.91711 1.23132 0.81534 1.00420 0.97141 1.87928 1.22089 1.71867 1.47884 1.21884 0.96946 0.90158 0.85138 1.21755 0.89873 1.03233 1.04167 1.22363 1.00780 0.96202 1.03709 1.22099 0.80260 1.00598 0.99757 1.57426 1.18679 1.73732 1.32276 1.01077 0.73477 0.72316 0.72573 1.93691 1.41178 1.80322 1.81990 1.93429 1.86471 1.33293 1.86085 1.30342 1.30792 1.06144 1.19855 1.20790 0.90607 0.99061 0.92094 1.21057 1.11146 0.94207 0.99541 1.21343 0.92979 0.94830 0.97222 1.21503 1.11242 0.99073 0.95247 1.17337 0.85312 0.90161 0.92373 1.20224 1.16535 1.04222 1.10871 0.87284 1.26516 1.00334 0.94083 0.94075 1.69636 1.38167 1.10879 1.25576 0.85872 0.79330 0.79837 0.78748 1.18366 1.17401 1.20240 0.92152 0.90740 0.90342 0.86061 0.91641 0.90254 0.89144 0.91837 0.93617 0.90539 0.90191 0.88894 0.91543 0.85271 0.84165 0.84404 0.87513 0.89300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.12 7.52 71.98 0.54 -5.58 16 2 C 0.13 4.79 3.62 44.97 0.16 4.95 16 3 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 4 C 0.06 1.62 5.87 72.08 0.42 2.04 16 5 O -0.38 -11.26 10.23 -148.98 -1.52 -12.78 16 6 C 0.10 2.71 1.11 -10.83 -0.01 2.69 16 7 C -0.13 -2.72 8.85 71.98 0.64 -2.09 16 8 C -0.17 -4.42 8.08 71.98 0.58 -3.84 16 9 C 0.10 3.21 5.31 86.21 0.46 3.67 16 10 N -0.98 -37.09 2.69 -490.12 -1.32 -38.41 16 11 S 2.71 116.51 4.54 -56.49 -0.26 116.25 16 12 O -0.98 -46.70 10.47 -128.00 -1.34 -48.04 16 13 O -1.00 -43.24 16.59 -128.00 -2.12 -45.36 16 14 C -0.78 -35.20 5.93 22.73 0.13 -35.07 16 15 C -0.01 -0.24 9.53 22.22 0.21 -0.03 16 16 C -0.24 -8.71 10.05 22.46 0.23 -8.48 16 17 C -0.05 -1.71 10.02 22.22 0.22 -1.49 16 18 C -0.25 -11.16 7.04 22.73 0.16 -10.99 16 19 C 0.15 7.39 4.94 -21.29 -0.11 7.28 16 20 C -0.49 -25.04 8.43 23.46 0.20 -24.84 16 21 H 0.11 6.01 4.02 -2.91 -0.01 6.00 16 22 C 0.07 3.35 5.47 85.26 0.47 3.82 16 23 N -0.82 -40.62 13.93 21.83 0.30 -40.31 16 24 Si 0.94 39.23 24.57 68.60 1.69 40.91 16 25 H -0.26 -10.32 6.76 99.48 0.67 -9.65 16 26 H -0.25 -10.65 6.80 99.48 0.68 -9.98 16 27 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 28 H 0.06 2.30 6.27 -2.39 -0.01 2.29 16 29 H 0.07 2.36 8.09 -2.39 -0.02 2.34 16 30 H 0.08 3.63 4.45 -2.39 -0.01 3.62 16 31 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 32 H 0.07 1.77 6.25 -2.39 -0.01 1.75 16 33 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.04 1.33 6.12 -2.39 -0.01 1.31 16 37 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 2.84 7.71 -2.39 -0.02 2.82 16 40 H 0.07 2.21 8.13 -2.39 -0.02 2.20 16 41 H 0.13 4.71 7.33 -2.91 -0.02 4.69 16 42 H 0.14 4.01 8.06 -2.91 -0.02 3.99 16 43 H 0.14 4.11 8.06 -2.91 -0.02 4.09 16 44 H 0.11 4.66 5.26 -2.91 -0.02 4.65 16 45 H 0.30 13.31 8.30 -92.71 -0.77 12.54 16 Total: -1.00 -60.72 350.50 0.68 -60.04 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.94 Total: 35.65 kcal Atomic # 6 Polarization: -72.26 SS G_CDS: 4.31 Total: -67.95 kcal Atomic # 7 Polarization: -77.70 SS G_CDS: -1.01 Total: -78.72 kcal Atomic # 8 Polarization: -101.20 SS G_CDS: -4.99 Total: -106.18 kcal Atomic # 14 Polarization: 39.23 SS G_CDS: 1.69 Total: 40.91 kcal Atomic # 16 Polarization: 116.51 SS G_CDS: -0.26 Total: 116.25 kcal Total: -60.72 0.68 -60.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601402593.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.449 kcal (2) G-P(sol) polarization free energy of solvation -60.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds