Wall clock time and date at job start Tue Mar 31 2020 22:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46861 * 2 1 4 4 H 1.08990 * 108.57162 * 57.05615 * 3 2 1 5 5 C 1.46922 * 108.61845 * 175.00417 * 3 2 1 6 6 N 1.50110 * 106.77588 * 177.92124 * 5 3 2 7 7 S 1.65597 * 120.63672 * 111.34517 * 6 5 3 8 8 O 1.42097 * 106.40389 * 344.64927 * 7 6 5 9 9 O 1.42100 * 106.39843 * 211.72944 * 7 6 5 10 10 C 1.76194 * 107.22187 * 98.19310 * 7 6 5 11 11 C 1.37638 * 120.13484 * 115.34068 * 10 7 6 12 12 C 1.38611 * 120.25175 * 179.97438 * 11 10 7 13 13 C 1.38650 * 120.50306 * 359.97438 * 12 11 10 14 14 C 1.37598 * 120.24949 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.12390 * 295.32275 * 10 7 6 16 16 C 1.41397 * 120.24529 * 359.97438 * 15 10 7 17 17 H 1.07993 * 119.99962 * 330.44706 * 16 15 10 18 18 C 1.39948 * 119.99652 * 150.44033 * 16 15 10 19 19 N 1.30824 * 120.00426 * 347.41424 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 167.41935 * 18 16 15 21 21 H 1.48503 * 109.47267 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47433 * 119.99802 * 20 18 16 23 23 H 1.48496 * 109.47378 * 240.00039 * 20 18 16 24 24 C 1.43427 * 118.72721 * 291.60964 * 6 5 3 25 25 C 1.54790 * 116.57575 * 89.22245 * 24 6 5 26 26 C 1.55187 * 108.80126 * 319.49716 * 25 24 6 27 27 O 1.39648 * 110.56653 * 322.07277 * 26 25 24 28 28 H 1.09001 * 109.47416 * 60.00063 * 1 2 3 29 29 H 1.09004 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47386 * 299.99728 * 1 2 3 31 31 H 1.09002 * 109.47386 * 240.00272 * 2 1 3 32 32 H 1.09001 * 109.47416 * 119.99937 * 2 1 3 33 33 H 1.08999 * 109.99125 * 58.59784 * 5 3 2 34 34 H 1.09003 * 109.98380 * 297.23364 * 5 3 2 35 35 H 1.08005 * 119.87247 * 359.97438 * 11 10 7 36 36 H 1.08001 * 119.74605 * 180.02562 * 12 11 10 37 37 H 1.08002 * 119.87965 * 180.28163 * 13 12 11 38 38 H 1.07997 * 120.13160 * 179.97438 * 14 13 12 39 39 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 40 40 H 1.09000 * 108.12716 * 210.84167 * 24 6 5 41 41 H 1.09005 * 108.12703 * 327.32929 * 24 6 5 42 42 H 1.09003 * 109.66587 * 199.66356 * 25 24 6 43 43 H 1.09007 * 109.64929 * 79.31388 * 25 24 6 44 44 H 1.09004 * 109.25700 * 201.79442 * 26 25 24 45 45 H 1.09001 * 109.26077 * 82.34768 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6259 1.9571 0.8670 5 6 3.5040 1.4226 0.1212 6 7 3.9629 2.8507 0.0651 7 16 4.6048 3.5840 1.4040 8 8 4.2655 2.7627 2.5128 9 8 4.2515 4.9576 1.3172 10 6 6.3584 3.5106 1.2487 11 6 7.0896 4.6694 1.1184 12 6 8.4693 4.6146 0.9966 13 6 9.1286 3.3949 1.0050 14 6 8.4180 2.2237 1.1341 15 6 7.0167 2.2672 1.2578 16 6 6.2761 1.0702 1.3920 17 1 5.3460 1.0693 1.9409 18 6 6.7483 -0.1133 0.8134 19 7 7.7305 -0.0730 -0.0498 20 14 5.9761 -1.7508 1.2736 21 1 4.8921 -1.5261 2.2635 22 1 5.4121 -2.3912 0.0582 23 1 7.0103 -2.6370 1.8654 24 6 3.8296 3.5696 -1.1687 25 6 2.4953 4.3223 -1.3910 26 6 1.3293 3.4342 -0.8812 27 8 1.5700 2.0908 -1.1773 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9385 0.8587 -0.7041 34 1 3.7929 0.9754 1.0724 35 1 6.5864 5.6251 1.1110 36 1 9.0350 5.5289 0.8952 37 1 10.2043 3.3641 0.9140 38 1 8.9334 1.2747 1.1400 39 1 8.0580 -0.8934 -0.4505 40 1 4.6378 4.2988 -1.2254 41 1 3.9595 2.8632 -1.9886 42 1 2.3617 4.5261 -2.4534 43 1 2.5077 5.2614 -0.8377 44 1 0.4022 3.7476 -1.3615 45 1 1.2323 3.5525 0.1980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601408436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:33 Heat of formation + Delta-G solvation = -99.550901 kcal Electronic energy + Delta-G solvation = -29882.610090 eV Core-core repulsion = 25991.843573 eV Total energy + Delta-G solvation = -3890.766517 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -39.75557 -37.63208 -36.43815 -35.21468 -34.91765 -34.29212 -33.90863 -31.04530 -30.26096 -29.59611 -28.04572 -25.80399 -25.46319 -22.80244 -21.73406 -21.24096 -21.07506 -20.95242 -18.13933 -17.67787 -17.29218 -16.50455 -16.06908 -15.79996 -15.35857 -15.30910 -14.62189 -14.39728 -14.20739 -13.78507 -13.56406 -13.40484 -13.23404 -13.03536 -12.80623 -12.37658 -12.16688 -12.00801 -11.86705 -11.77770 -11.56233 -11.34103 -11.27951 -11.25312 -11.17725 -11.07176 -10.88893 -10.78312 -10.59157 -10.55016 -10.36467 -10.08619 -9.90890 -9.51944 -9.38248 -9.23226 -8.44236 -8.04949 -7.63284 -7.10020 -4.82611 1.44175 2.30178 2.66637 2.92310 2.99047 3.03647 3.70663 3.76623 4.08638 4.34033 4.67170 4.87662 5.07615 5.16207 5.19967 5.25937 5.29942 5.34452 5.41739 5.51330 5.60425 5.75520 5.83176 5.88288 6.00006 6.01544 6.04581 6.08867 6.13876 6.19649 6.20792 6.32075 6.34993 6.39181 6.44068 6.62857 6.74971 6.92211 7.01601 7.24266 7.30462 7.41693 7.48174 7.64664 7.77034 7.89778 8.29487 8.46666 8.61517 9.83999 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.006887 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.427416 B = 4064.779425 C = 5881.415044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.130 4.130 3 C 0.065 3.935 4 H 0.063 0.937 5 C 0.106 3.894 6 N -0.987 5.987 7 S 2.701 3.299 8 O -0.975 6.975 9 O -0.993 6.993 10 C -0.775 4.775 11 C -0.004 4.004 12 C -0.248 4.248 13 C -0.077 4.077 14 C -0.157 4.157 15 C 0.194 3.806 16 C -0.476 4.476 17 H 0.113 0.887 18 C 0.083 3.917 19 N -0.776 5.776 20 Si 0.897 3.103 21 H -0.248 1.248 22 H -0.266 1.266 23 H -0.267 1.267 24 C 0.136 3.864 25 C -0.168 4.168 26 C 0.056 3.944 27 O -0.348 6.348 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.286 0.714 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.516 -0.553 -3.149 9.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.168 4.168 3 C 0.005 3.995 4 H 0.081 0.919 5 C -0.018 4.018 6 N -0.821 5.821 7 S 2.800 3.200 8 O -0.966 6.966 9 O -0.984 6.984 10 C -0.871 4.871 11 C -0.024 4.024 12 C -0.268 4.268 13 C -0.095 4.095 14 C -0.177 4.177 15 C 0.189 3.811 16 C -0.504 4.504 17 H 0.131 0.869 18 C -0.139 4.139 19 N -0.399 5.399 20 Si 0.720 3.280 21 H -0.171 1.171 22 H -0.191 1.191 23 H -0.192 1.192 24 C 0.008 3.992 25 C -0.208 4.208 26 C -0.022 4.022 27 O -0.266 6.266 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.133 0.867 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.140 0.860 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.914 -0.436 -2.826 9.361 hybrid contribution 0.821 -0.695 -0.174 1.089 sum -8.093 -1.131 -2.999 8.705 Atomic orbital electron populations 1.21691 0.95401 1.01260 1.02031 1.21741 0.96671 0.95219 1.03177 1.21649 0.95372 0.94522 0.87907 0.91882 1.21691 0.92829 0.81816 1.05508 1.57495 1.77034 1.20620 1.26925 1.01118 0.74693 0.71807 0.72366 1.93462 1.84546 1.69057 1.49499 1.93440 1.84261 1.33964 1.86688 1.29849 1.22100 0.99980 1.35132 1.20246 0.94176 0.95412 0.92569 1.20502 0.94188 0.96491 1.15619 1.20910 0.97787 0.93423 0.97427 1.21486 0.94282 0.96984 1.04908 1.17011 0.92019 0.89720 0.82353 1.20470 1.08685 0.92385 1.28868 0.86942 1.25963 0.93968 1.01413 0.92536 1.69797 1.20844 1.30930 1.18334 0.86381 0.80896 0.80479 0.80230 1.17126 1.19079 1.19214 1.20375 0.96074 0.95673 0.87079 1.23369 0.95979 0.99518 1.01911 1.22518 0.97013 0.82911 0.99739 1.87635 1.84818 1.20883 1.33223 0.92052 0.92959 0.93097 0.90866 0.90434 0.89857 0.86686 0.87479 0.88672 0.88789 0.85989 0.90237 0.91715 0.90980 0.90576 0.90417 0.91039 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.77 37.15 0.36 -1.26 16 2 C -0.13 -1.67 5.55 -26.73 -0.15 -1.82 16 3 C 0.06 0.97 2.06 -29.64 -0.06 0.91 16 4 H 0.06 0.96 6.76 -51.93 -0.35 0.60 16 5 C 0.11 1.85 4.33 -4.93 -0.02 1.83 16 6 N -0.99 -18.55 2.85 -115.89 -0.33 -18.88 16 7 S 2.70 59.20 4.98 -107.50 -0.54 58.66 16 8 O -0.98 -23.04 14.54 -57.17 -0.83 -23.87 16 9 O -0.99 -22.33 16.34 -57.17 -0.93 -23.26 16 10 C -0.78 -18.53 5.96 -38.87 -0.23 -18.77 16 11 C 0.00 -0.09 9.53 -39.66 -0.38 -0.47 16 12 C -0.25 -5.42 10.05 -39.29 -0.39 -5.81 16 13 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 14 C -0.16 -3.84 8.66 -38.87 -0.34 -4.17 16 15 C 0.19 4.85 5.53 -106.82 -0.59 4.26 16 16 C -0.48 -11.43 6.80 -37.74 -0.26 -11.69 16 17 H 0.11 2.69 3.76 -52.49 -0.20 2.49 16 18 C 0.08 1.85 5.21 -17.34 -0.09 1.76 16 19 N -0.78 -17.88 11.00 55.55 0.61 -17.27 16 20 Si 0.90 16.78 29.58 -169.99 -5.03 11.75 16 21 H -0.25 -4.59 7.11 56.52 0.40 -4.19 16 22 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 24 C 0.14 2.27 4.90 -4.72 -0.02 2.25 16 25 C -0.17 -2.37 6.74 -24.63 -0.17 -2.53 16 26 C 0.06 0.77 6.38 38.32 0.24 1.01 16 27 O -0.35 -5.12 9.14 -31.96 -0.29 -5.41 16 28 H 0.06 0.69 7.66 -51.93 -0.40 0.29 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.08 0.96 8.13 -51.93 -0.42 0.54 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.12 2.15 5.02 -51.93 -0.26 1.89 16 35 H 0.11 2.26 7.33 -52.48 -0.38 1.87 16 36 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.12 3.00 6.36 -52.49 -0.33 2.67 16 39 H 0.29 5.97 8.30 -40.82 -0.34 5.63 16 40 H 0.06 1.10 7.92 -51.93 -0.41 0.69 16 41 H 0.07 1.15 7.99 -51.93 -0.41 0.74 16 42 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.05 0.74 6.66 -51.93 -0.35 0.39 16 LS Contribution 360.22 15.07 5.43 5.43 Total: -1.00 -27.84 360.22 -10.86 -38.70 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -6.46 Total: 10.77 kcal Atomic # 6 Polarization: -34.13 SS G_CDS: -2.49 Total: -36.61 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.28 Total: -36.15 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -2.06 Total: -52.54 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Atomic # 16 Polarization: 59.20 SS G_CDS: -0.54 Total: 58.66 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.84 -10.86 -38.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601408436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.849 kcal (2) G-P(sol) polarization free energy of solvation -27.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds