Wall clock time and date at job start Tue Mar 31 2020 22:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53008 * 109.46861 * 2 1 4 4 H 1.08990 * 108.57162 * 57.05615 * 3 2 1 5 5 C 1.46922 * 108.61845 * 175.00417 * 3 2 1 6 6 N 1.50110 * 106.77588 * 177.92124 * 5 3 2 7 7 S 1.65597 * 120.63672 * 111.34517 * 6 5 3 8 8 O 1.42097 * 106.40389 * 344.64927 * 7 6 5 9 9 O 1.42100 * 106.39843 * 211.72944 * 7 6 5 10 10 C 1.76194 * 107.22187 * 98.19310 * 7 6 5 11 11 C 1.37638 * 120.13484 * 115.34068 * 10 7 6 12 12 C 1.38611 * 120.25175 * 179.97438 * 11 10 7 13 13 C 1.38650 * 120.50306 * 359.97438 * 12 11 10 14 14 C 1.37598 * 120.24949 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.12390 * 295.32275 * 10 7 6 16 16 C 1.41397 * 120.24529 * 359.97438 * 15 10 7 17 17 H 1.07993 * 119.99962 * 330.44706 * 16 15 10 18 18 C 1.39948 * 119.99652 * 150.44033 * 16 15 10 19 19 N 1.30824 * 120.00426 * 347.41424 * 18 16 15 20 20 Si 1.86798 * 119.99848 * 167.41935 * 18 16 15 21 21 H 1.48503 * 109.47267 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47433 * 119.99802 * 20 18 16 23 23 H 1.48496 * 109.47378 * 240.00039 * 20 18 16 24 24 C 1.43427 * 118.72721 * 291.60964 * 6 5 3 25 25 C 1.54790 * 116.57575 * 89.22245 * 24 6 5 26 26 C 1.55187 * 108.80126 * 319.49716 * 25 24 6 27 27 O 1.39648 * 110.56653 * 322.07277 * 26 25 24 28 28 H 1.09001 * 109.47416 * 60.00063 * 1 2 3 29 29 H 1.09004 * 109.47298 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47386 * 299.99728 * 1 2 3 31 31 H 1.09002 * 109.47386 * 240.00272 * 2 1 3 32 32 H 1.09001 * 109.47416 * 119.99937 * 2 1 3 33 33 H 1.08999 * 109.99125 * 58.59784 * 5 3 2 34 34 H 1.09003 * 109.98380 * 297.23364 * 5 3 2 35 35 H 1.08005 * 119.87247 * 359.97438 * 11 10 7 36 36 H 1.08001 * 119.74605 * 180.02562 * 12 11 10 37 37 H 1.08002 * 119.87965 * 180.28163 * 13 12 11 38 38 H 1.07997 * 120.13160 * 179.97438 * 14 13 12 39 39 H 0.96999 * 120.00073 * 179.97438 * 19 18 16 40 40 H 1.09000 * 108.12716 * 210.84167 * 24 6 5 41 41 H 1.09005 * 108.12703 * 327.32929 * 24 6 5 42 42 H 1.09003 * 109.66587 * 199.66356 * 25 24 6 43 43 H 1.09007 * 109.64929 * 79.31388 * 25 24 6 44 44 H 1.09004 * 109.25700 * 201.79442 * 26 25 24 45 45 H 1.09001 * 109.26077 * 82.34768 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6259 1.9571 0.8670 5 6 3.5040 1.4226 0.1212 6 7 3.9629 2.8507 0.0651 7 16 4.6048 3.5840 1.4040 8 8 4.2655 2.7627 2.5128 9 8 4.2515 4.9576 1.3172 10 6 6.3584 3.5106 1.2487 11 6 7.0896 4.6694 1.1184 12 6 8.4693 4.6146 0.9966 13 6 9.1286 3.3949 1.0050 14 6 8.4180 2.2237 1.1341 15 6 7.0167 2.2672 1.2578 16 6 6.2761 1.0702 1.3920 17 1 5.3460 1.0693 1.9409 18 6 6.7483 -0.1133 0.8134 19 7 7.7305 -0.0730 -0.0498 20 14 5.9761 -1.7508 1.2736 21 1 4.8921 -1.5261 2.2635 22 1 5.4121 -2.3912 0.0582 23 1 7.0103 -2.6370 1.8654 24 6 3.8296 3.5696 -1.1687 25 6 2.4953 4.3223 -1.3910 26 6 1.3293 3.4342 -0.8812 27 8 1.5700 2.0908 -1.1773 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9385 0.8587 -0.7041 34 1 3.7929 0.9754 1.0724 35 1 6.5864 5.6251 1.1110 36 1 9.0350 5.5289 0.8952 37 1 10.2043 3.3641 0.9140 38 1 8.9334 1.2747 1.1400 39 1 8.0580 -0.8934 -0.4505 40 1 4.6378 4.2988 -1.2254 41 1 3.9595 2.8632 -1.9886 42 1 2.3617 4.5261 -2.4534 43 1 2.5077 5.2614 -0.8377 44 1 0.4022 3.7476 -1.3615 45 1 1.2323 3.5525 0.1980 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601408436.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:32 Heat of formation + Delta-G solvation = -115.437858 kcal Electronic energy + Delta-G solvation = -29883.299000 eV Core-core repulsion = 25991.843573 eV Total energy + Delta-G solvation = -3891.455427 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.95009 -39.39941 -38.20769 -36.74862 -36.55132 -35.66336 -35.37346 -32.20042 -31.99383 -31.37907 -29.27533 -27.39570 -26.85657 -23.98580 -23.47179 -22.97358 -22.29795 -22.17602 -19.78347 -19.40308 -18.84364 -17.91061 -17.61144 -17.33899 -16.90867 -16.53332 -16.10523 -15.99621 -15.61552 -15.19516 -14.96207 -14.79672 -14.62759 -14.47039 -14.36877 -13.79196 -13.68098 -13.43460 -13.28223 -13.11796 -13.02522 -12.97865 -12.86487 -12.84232 -12.82827 -12.50141 -12.25430 -12.14231 -11.96025 -11.81889 -11.64620 -11.55617 -11.34650 -11.18513 -11.03060 -10.51931 -9.95175 -9.77193 -9.44252 -8.80429 -6.63112 -0.24859 0.51547 0.95031 1.38072 1.46717 1.52950 2.15067 2.17970 2.60719 2.90710 2.99185 3.46937 3.50423 3.86599 3.89888 4.00476 4.10217 4.15159 4.28015 4.29000 4.34515 4.46189 4.47366 4.56398 4.68356 4.75426 4.77208 4.88258 4.90923 4.95604 4.99093 5.03098 5.11119 5.15752 5.18209 5.26238 5.27141 5.31499 5.48236 5.52305 5.67205 5.80026 5.86772 5.97911 6.11756 6.27417 6.49466 6.69181 6.81933 8.16441 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010666 B = 0.006887 C = 0.004760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2624.427416 B = 4064.779425 C = 5881.415044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.066 3.934 4 H 0.060 0.940 5 C 0.105 3.895 6 N -0.984 5.984 7 S 2.715 3.285 8 O -0.997 6.997 9 O -1.002 7.002 10 C -0.798 4.798 11 C -0.018 4.018 12 C -0.251 4.251 13 C -0.077 4.077 14 C -0.184 4.184 15 C 0.166 3.834 16 C -0.493 4.493 17 H 0.108 0.892 18 C 0.053 3.947 19 N -0.799 5.799 20 Si 0.951 3.049 21 H -0.248 1.248 22 H -0.248 1.248 23 H -0.264 1.264 24 C 0.126 3.874 25 C -0.163 4.163 26 C 0.051 3.949 27 O -0.348 6.348 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.120 0.880 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.113 0.887 39 H 0.296 0.704 40 H 0.055 0.945 41 H 0.078 0.922 42 H 0.102 0.898 43 H 0.072 0.928 44 H 0.102 0.898 45 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.697 -1.058 -4.101 10.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.169 4.169 3 C 0.007 3.993 4 H 0.078 0.922 5 C -0.019 4.019 6 N -0.820 5.820 7 S 2.813 3.187 8 O -0.988 6.988 9 O -0.993 6.993 10 C -0.892 4.892 11 C -0.038 4.038 12 C -0.271 4.271 13 C -0.096 4.096 14 C -0.204 4.204 15 C 0.162 3.838 16 C -0.521 4.521 17 H 0.126 0.874 18 C -0.166 4.166 19 N -0.423 5.423 20 Si 0.770 3.230 21 H -0.171 1.171 22 H -0.171 1.171 23 H -0.188 1.188 24 C -0.001 4.001 25 C -0.203 4.203 26 C -0.027 4.027 27 O -0.266 6.266 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.138 0.862 36 H 0.145 0.855 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.107 0.893 40 H 0.074 0.926 41 H 0.096 0.904 42 H 0.121 0.879 43 H 0.090 0.910 44 H 0.120 0.880 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.074 -0.921 -3.785 10.801 hybrid contribution 1.247 -0.469 0.076 1.335 sum -8.827 -1.389 -3.709 9.675 Atomic orbital electron populations 1.21656 0.93804 1.02363 1.02067 1.21775 0.98056 0.93525 1.03500 1.21590 0.93570 0.96120 0.88055 0.92205 1.21786 0.94631 0.80816 1.04681 1.57296 1.76557 1.21341 1.26794 1.00603 0.74011 0.71492 0.72606 1.93419 1.84651 1.69514 1.51204 1.93413 1.84165 1.34623 1.87082 1.30210 1.23523 1.00133 1.35323 1.20563 0.94979 0.95698 0.92577 1.20888 0.94121 0.97604 1.14504 1.21249 0.99297 0.92946 0.96059 1.21547 0.94468 0.97481 1.06932 1.17343 0.92653 0.90614 0.83216 1.20571 1.08812 0.93126 1.29558 0.87447 1.26634 0.94191 1.03882 0.91921 1.69819 1.21523 1.32271 1.18642 0.85595 0.80211 0.76599 0.80623 1.17061 1.17128 1.18847 1.20615 0.97615 0.95733 0.86139 1.23366 0.94502 0.98856 1.03567 1.22668 0.97978 0.82374 0.99675 1.87635 1.84603 1.21353 1.33001 0.92163 0.91343 0.92901 0.90548 0.90154 0.89930 0.88145 0.86243 0.85520 0.85956 0.86948 0.89319 0.92649 0.90401 0.87932 0.90965 0.88044 0.93800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 9.77 71.98 0.70 -2.10 16 2 C -0.13 -3.13 5.55 30.59 0.17 -2.96 16 3 C 0.07 1.92 2.06 28.71 0.06 1.98 16 4 H 0.06 1.78 6.76 -2.39 -0.02 1.76 16 5 C 0.10 3.65 4.33 83.79 0.36 4.02 16 6 N -0.98 -37.18 2.85 -520.56 -1.48 -38.66 16 7 S 2.71 121.06 4.98 -56.49 -0.28 120.78 16 8 O -1.00 -48.31 14.54 -128.00 -1.86 -50.18 16 9 O -1.00 -45.41 16.34 -128.00 -2.09 -47.50 16 10 C -0.80 -38.91 5.96 22.73 0.14 -38.77 16 11 C -0.02 -0.84 9.53 22.22 0.21 -0.63 16 12 C -0.25 -10.76 10.05 22.46 0.23 -10.53 16 13 C -0.08 -3.40 10.02 22.22 0.22 -3.18 16 14 C -0.18 -9.20 8.66 22.73 0.20 -9.00 16 15 C 0.17 8.54 5.53 -21.29 -0.12 8.42 16 16 C -0.49 -24.22 6.80 23.46 0.16 -24.06 16 17 H 0.11 5.29 3.76 -2.91 -0.01 5.28 16 18 C 0.05 2.40 5.21 85.26 0.44 2.84 16 19 N -0.80 -37.13 11.00 21.83 0.24 -36.89 16 20 Si 0.95 33.85 29.58 68.60 2.03 35.88 16 21 H -0.25 -8.72 7.11 99.48 0.71 -8.02 16 22 H -0.25 -8.05 7.11 99.48 0.71 -7.34 16 23 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 24 C 0.13 4.15 4.90 87.56 0.43 4.58 16 25 C -0.16 -4.33 6.74 31.96 0.22 -4.11 16 26 C 0.05 1.28 6.38 72.73 0.46 1.75 16 27 O -0.35 -9.60 9.14 -137.27 -1.25 -10.85 16 28 H 0.06 1.21 7.66 -2.39 -0.02 1.19 16 29 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.08 1.87 8.13 -2.39 -0.02 1.85 16 33 H 0.08 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.10 3.81 5.02 -2.39 -0.01 3.80 16 35 H 0.12 5.02 7.33 -2.91 -0.02 5.00 16 36 H 0.13 4.53 8.06 -2.91 -0.02 4.50 16 37 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.11 5.69 6.36 -2.91 -0.02 5.67 16 39 H 0.30 12.28 8.30 -92.71 -0.77 11.51 16 40 H 0.06 1.90 7.92 -2.39 -0.02 1.88 16 41 H 0.08 2.45 7.99 -2.38 -0.02 2.43 16 42 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.10 1.98 8.14 -2.38 -0.02 1.96 16 45 H 0.04 1.18 6.66 -2.39 -0.02 1.17 16 Total: -1.00 -59.83 360.22 0.18 -59.65 By element: Atomic # 1 Polarization: 38.54 SS G_CDS: 1.00 Total: 39.54 kcal Atomic # 6 Polarization: -75.65 SS G_CDS: 3.88 Total: -71.77 kcal Atomic # 7 Polarization: -74.31 SS G_CDS: -1.24 Total: -75.55 kcal Atomic # 8 Polarization: -103.32 SS G_CDS: -5.21 Total: -108.53 kcal Atomic # 14 Polarization: 33.85 SS G_CDS: 2.03 Total: 35.88 kcal Atomic # 16 Polarization: 121.06 SS G_CDS: -0.28 Total: 120.78 kcal Total: -59.83 0.18 -59.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601408436.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.785 kcal (2) G-P(sol) polarization free energy of solvation -59.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds