Wall clock time and date at job start Tue Mar 31 2020 22:08:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47095 * 2 1 4 4 H 1.09001 * 109.46810 * 302.87404 * 3 2 1 5 5 C 1.54805 * 109.46633 * 182.88415 * 3 2 1 6 6 N 1.45122 * 109.52880 * 172.10479 * 5 3 2 7 7 S 1.65601 * 118.75621 * 269.29153 * 6 5 3 8 8 O 1.42092 * 106.40154 * 330.42117 * 7 6 5 9 9 O 1.42109 * 106.40173 * 197.50267 * 7 6 5 10 10 C 1.76196 * 107.21954 * 83.96552 * 7 6 5 11 11 C 1.37637 * 120.12760 * 248.85786 * 10 7 6 12 12 C 1.38611 * 120.25542 * 179.97438 * 11 10 7 13 13 C 1.38663 * 120.49564 * 0.02562 * 12 11 10 14 14 C 1.37599 * 120.25034 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.12911 * 68.87829 * 10 7 6 16 16 C 1.41396 * 120.24528 * 359.97438 * 15 10 7 17 17 H 1.08000 * 120.00118 * 30.51812 * 16 15 10 18 18 C 1.39945 * 120.00096 * 210.51764 * 16 15 10 19 19 N 1.30828 * 119.99764 * 10.15906 * 18 16 15 20 20 Si 1.86793 * 119.99981 * 190.16072 * 18 16 15 21 21 H 1.48508 * 109.47176 * 65.02938 * 20 18 16 22 22 H 1.48500 * 109.46964 * 185.02762 * 20 18 16 23 23 H 1.48496 * 109.47389 * 305.03039 * 20 18 16 24 24 C 1.47510 * 122.48578 * 89.56613 * 6 5 3 25 25 C 1.53951 * 110.82362 * 317.97450 * 24 6 5 26 26 C 1.51540 * 109.72641 * 320.30980 * 25 24 6 27 27 O 1.38015 * 109.47052 * 62.86882 * 3 2 1 28 28 H 1.08999 * 109.47464 * 174.89126 * 1 2 3 29 29 H 1.08998 * 109.46895 * 294.89332 * 1 2 3 30 30 H 1.09001 * 109.46893 * 54.89141 * 1 2 3 31 31 H 1.09006 * 109.46683 * 239.99640 * 2 1 3 32 32 H 1.08996 * 109.46834 * 119.99838 * 2 1 3 33 33 H 1.08992 * 109.46456 * 52.08691 * 5 3 2 34 34 H 1.09001 * 109.44955 * 292.11062 * 5 3 2 35 35 H 1.08007 * 119.87320 * 0.02562 * 11 10 7 36 36 H 1.07988 * 119.75585 * 180.02562 * 12 11 10 37 37 H 1.07997 * 119.87469 * 179.72146 * 13 12 11 38 38 H 1.07998 * 120.13251 * 179.97438 * 14 13 12 39 39 H 0.97001 * 119.99627 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.17091 * 78.49503 * 24 6 5 41 41 H 1.09004 * 109.16406 * 197.69819 * 24 6 5 42 42 H 1.08994 * 109.46335 * 200.17514 * 25 24 6 43 43 H 1.09005 * 109.27309 * 80.32007 * 25 24 6 44 44 H 1.09002 * 109.58583 * 331.50757 * 26 25 24 45 45 H 1.08994 * 109.70359 * 211.14623 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6352 1.9709 -0.8631 5 6 3.5863 1.4430 -0.0734 6 7 4.0626 2.8009 -0.2614 7 16 4.2728 3.3651 -1.8041 8 8 4.5975 2.2361 -2.6034 9 8 5.1069 4.5111 -1.7021 10 6 2.7052 3.9394 -2.3674 11 6 2.0397 3.2638 -3.3649 12 6 0.8061 3.7129 -3.8098 13 6 0.2287 4.8461 -3.2572 14 6 0.8764 5.5379 -2.2596 15 6 2.1291 5.0906 -1.7996 16 6 2.8034 5.7928 -0.7742 17 1 3.8830 5.8002 -0.7446 18 6 2.0720 6.4782 0.2024 19 7 0.7774 6.3101 0.2880 20 14 2.9441 7.6330 1.3835 21 1 3.5129 8.7776 0.6273 22 1 1.9748 8.1369 2.3893 23 1 4.0380 6.9026 2.0728 24 6 4.3723 3.6955 0.8698 25 6 3.3051 3.5730 1.9726 26 6 1.9316 3.4515 1.3439 27 8 1.6339 2.0740 1.1580 28 1 -0.3634 -1.0236 -0.0915 29 1 -0.3633 0.4326 0.9322 30 1 -0.3633 0.5910 -0.8407 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9104 0.8253 -0.9110 34 1 3.9939 1.0403 0.8539 35 1 2.4799 2.3798 -3.8022 36 1 0.2908 3.1764 -4.5926 37 1 -0.7308 5.1897 -3.6145 38 1 0.4251 6.4204 -1.8308 39 1 0.2705 6.7849 0.9651 40 1 5.3471 3.4306 1.2792 41 1 4.4026 4.7253 0.5137 42 1 3.3364 4.4578 2.6082 43 1 3.5088 2.6868 2.5736 44 1 1.9247 3.9602 0.3798 45 1 1.1862 3.9013 1.9996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601408437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:37 Heat of formation + Delta-G solvation = -101.392057 kcal Electronic energy + Delta-G solvation = -30920.995408 eV Core-core repulsion = 27030.149052 eV Total energy + Delta-G solvation = -3890.846355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.23472 -37.67510 -36.50969 -35.24011 -34.90622 -34.10844 -33.71258 -31.01726 -30.31554 -29.63638 -27.43583 -25.86544 -25.48360 -22.75504 -21.72357 -21.21519 -20.69890 -20.46520 -18.15664 -17.74069 -17.25590 -16.40239 -15.97586 -15.80587 -15.46665 -15.24718 -14.46094 -14.43922 -13.82584 -13.61310 -13.44317 -13.26573 -13.20107 -12.84162 -12.79580 -12.37510 -12.22319 -11.97936 -11.83041 -11.55570 -11.34825 -11.31833 -11.23975 -11.20102 -11.15879 -10.94066 -10.78090 -10.63446 -10.62238 -10.52110 -10.09440 -9.94013 -9.83848 -9.41791 -9.23559 -8.93195 -8.28930 -8.03493 -7.64824 -7.12306 -4.86846 1.43171 2.25855 2.65742 2.89776 2.93327 3.02824 3.68240 3.76147 4.25812 4.30605 4.66354 5.05842 5.17989 5.19971 5.36944 5.38199 5.50436 5.56867 5.62534 5.76844 5.82057 5.92734 5.98171 6.00089 6.15225 6.16981 6.18984 6.24749 6.33702 6.34488 6.36029 6.48526 6.56767 6.62325 6.69909 6.74926 6.87759 6.95078 6.99966 7.24987 7.28248 7.45161 7.62288 7.73535 7.87201 8.27998 8.28100 8.42737 8.56565 9.79642 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.007516 C = 0.006869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.706842 B = 3724.732510 C = 4075.465965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C 0.082 3.918 4 H 0.061 0.939 5 C 0.083 3.917 6 N -0.990 5.990 7 S 2.695 3.305 8 O -0.994 6.994 9 O -0.972 6.972 10 C -0.775 4.775 11 C -0.004 4.004 12 C -0.243 4.243 13 C -0.076 4.076 14 C -0.155 4.155 15 C 0.194 3.806 16 C -0.483 4.483 17 H 0.119 0.881 18 C 0.083 3.917 19 N -0.775 5.775 20 Si 0.898 3.102 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.253 1.253 24 C 0.114 3.886 25 C -0.154 4.154 26 C 0.060 3.940 27 O -0.388 6.388 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.288 0.712 40 H 0.054 0.946 41 H 0.108 0.892 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -5.289 4.171 6.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.150 4.150 3 C 0.021 3.979 4 H 0.079 0.921 5 C -0.043 4.043 6 N -0.825 5.825 7 S 2.794 3.206 8 O -0.985 6.985 9 O -0.963 6.963 10 C -0.871 4.871 11 C -0.024 4.024 12 C -0.264 4.264 13 C -0.095 4.095 14 C -0.174 4.174 15 C 0.189 3.811 16 C -0.511 4.511 17 H 0.137 0.863 18 C -0.138 4.138 19 N -0.398 5.398 20 Si 0.721 3.279 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.177 1.177 24 C -0.010 4.010 25 C -0.193 4.193 26 C -0.015 4.015 27 O -0.307 6.307 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.142 0.858 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.126 0.874 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.125 0.875 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.566 -5.330 4.054 6.721 hybrid contribution -0.488 0.920 0.453 1.135 sum 0.079 -4.410 4.507 6.306 Atomic orbital electron populations 1.21661 0.95324 1.00674 1.02633 1.21492 0.96782 0.94575 1.02171 1.22133 0.92938 0.93485 0.89353 0.92132 1.22221 0.95433 0.83105 1.03584 1.57238 1.81690 1.20206 1.23379 1.01300 0.75073 0.72550 0.71692 1.93427 1.84479 1.52763 1.67845 1.93461 1.66809 1.50249 1.85749 1.29917 1.26796 1.11347 1.19006 1.20230 0.93453 0.95819 0.92864 1.20510 0.98082 1.01748 1.06015 1.20928 0.97601 0.95059 0.95920 1.21522 0.97322 1.01171 0.97414 1.16984 0.90614 0.86295 0.87214 1.20549 0.97177 1.26185 1.07210 0.86326 1.25931 0.94715 0.94979 0.98180 1.69785 1.07180 1.33314 1.29562 0.86486 0.80468 0.81274 0.79709 1.18237 1.19856 1.17669 1.21943 0.96594 0.95352 0.87114 1.22395 0.96945 1.01927 0.98041 1.22516 0.93888 0.81153 1.03954 1.86102 1.79320 1.25261 1.40001 0.93360 0.92119 0.92672 0.90778 0.91519 0.89156 0.90115 0.87487 0.88699 0.88833 0.85761 0.90045 0.92779 0.87413 0.90892 0.91597 0.87471 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.72 37.16 0.36 -1.63 16 2 C -0.11 -1.57 5.65 -26.73 -0.15 -1.72 16 3 C 0.08 1.40 2.67 -25.78 -0.07 1.33 16 4 H 0.06 1.20 7.07 -51.93 -0.37 0.83 16 5 C 0.08 1.39 5.11 -3.83 -0.02 1.37 16 6 N -0.99 -18.63 2.48 -113.03 -0.28 -18.91 16 7 S 2.69 58.77 5.10 -107.50 -0.55 58.22 16 8 O -0.99 -22.42 15.55 -57.17 -0.89 -23.31 16 9 O -0.97 -23.09 14.25 -57.17 -0.82 -23.91 16 10 C -0.78 -17.76 5.11 -38.87 -0.20 -17.96 16 11 C 0.00 -0.08 9.35 -39.66 -0.37 -0.45 16 12 C -0.24 -5.10 10.05 -39.29 -0.39 -5.50 16 13 C -0.08 -1.63 10.02 -39.66 -0.40 -2.03 16 14 C -0.15 -3.60 8.65 -38.87 -0.34 -3.94 16 15 C 0.19 4.60 4.45 -106.82 -0.48 4.12 16 16 C -0.48 -11.11 5.13 -37.74 -0.19 -11.31 16 17 H 0.12 2.80 3.89 -52.49 -0.20 2.60 16 18 C 0.08 1.77 4.24 -17.34 -0.07 1.70 16 19 N -0.78 -16.60 10.67 55.55 0.59 -16.01 16 20 Si 0.90 16.52 29.57 -169.99 -5.03 11.49 16 21 H -0.26 -4.90 7.11 56.52 0.40 -4.49 16 22 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 23 H -0.25 -4.45 7.11 56.52 0.40 -4.04 16 24 C 0.11 2.03 5.57 -2.99 -0.02 2.02 16 25 C -0.15 -2.55 5.79 -26.97 -0.16 -2.70 16 26 C 0.06 1.13 6.01 36.42 0.22 1.35 16 27 O -0.39 -7.07 8.99 -26.54 -0.24 -7.31 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.88 7.91 -51.93 -0.41 0.46 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.09 1.46 6.91 -51.93 -0.36 1.10 16 34 H 0.08 1.18 8.11 -51.93 -0.42 0.76 16 35 H 0.11 2.18 7.33 -52.48 -0.38 1.80 16 36 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.12 2.92 6.34 -52.49 -0.33 2.59 16 39 H 0.29 5.69 8.30 -40.82 -0.34 5.35 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.11 2.11 4.25 -51.93 -0.22 1.89 16 42 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.07 1.00 8.01 -51.93 -0.42 0.58 16 44 H 0.11 2.25 3.29 -51.93 -0.17 2.07 16 45 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 LS Contribution 349.98 15.07 5.27 5.27 Total: -1.00 -26.11 349.98 -10.43 -36.54 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -6.23 Total: 13.26 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: -2.27 Total: -35.35 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: 0.31 Total: -34.91 kcal Atomic # 8 Polarization: -52.58 SS G_CDS: -1.94 Total: -54.52 kcal Atomic # 14 Polarization: 16.52 SS G_CDS: -5.03 Total: 11.49 kcal Atomic # 16 Polarization: 58.77 SS G_CDS: -0.55 Total: 58.22 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -26.11 -10.43 -36.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601408437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.853 kcal (2) G-P(sol) polarization free energy of solvation -26.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds