Wall clock time and date at job start Tue Mar 31 2020 22:08:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47095 * 2 1 4 4 H 1.09001 * 109.46810 * 302.87404 * 3 2 1 5 5 C 1.54805 * 109.46633 * 182.88415 * 3 2 1 6 6 N 1.45122 * 109.52880 * 172.10479 * 5 3 2 7 7 S 1.65601 * 118.75621 * 269.29153 * 6 5 3 8 8 O 1.42092 * 106.40154 * 330.42117 * 7 6 5 9 9 O 1.42109 * 106.40173 * 197.50267 * 7 6 5 10 10 C 1.76196 * 107.21954 * 83.96552 * 7 6 5 11 11 C 1.37637 * 120.12760 * 248.85786 * 10 7 6 12 12 C 1.38611 * 120.25542 * 179.97438 * 11 10 7 13 13 C 1.38663 * 120.49564 * 0.02562 * 12 11 10 14 14 C 1.37599 * 120.25034 * 0.02562 * 13 12 11 15 15 C 1.40699 * 120.12911 * 68.87829 * 10 7 6 16 16 C 1.41396 * 120.24528 * 359.97438 * 15 10 7 17 17 H 1.08000 * 120.00118 * 30.51812 * 16 15 10 18 18 C 1.39945 * 120.00096 * 210.51764 * 16 15 10 19 19 N 1.30828 * 119.99764 * 10.15906 * 18 16 15 20 20 Si 1.86793 * 119.99981 * 190.16072 * 18 16 15 21 21 H 1.48508 * 109.47176 * 65.02938 * 20 18 16 22 22 H 1.48500 * 109.46964 * 185.02762 * 20 18 16 23 23 H 1.48496 * 109.47389 * 305.03039 * 20 18 16 24 24 C 1.47510 * 122.48578 * 89.56613 * 6 5 3 25 25 C 1.53951 * 110.82362 * 317.97450 * 24 6 5 26 26 C 1.51540 * 109.72641 * 320.30980 * 25 24 6 27 27 O 1.38015 * 109.47052 * 62.86882 * 3 2 1 28 28 H 1.08999 * 109.47464 * 174.89126 * 1 2 3 29 29 H 1.08998 * 109.46895 * 294.89332 * 1 2 3 30 30 H 1.09001 * 109.46893 * 54.89141 * 1 2 3 31 31 H 1.09006 * 109.46683 * 239.99640 * 2 1 3 32 32 H 1.08996 * 109.46834 * 119.99838 * 2 1 3 33 33 H 1.08992 * 109.46456 * 52.08691 * 5 3 2 34 34 H 1.09001 * 109.44955 * 292.11062 * 5 3 2 35 35 H 1.08007 * 119.87320 * 0.02562 * 11 10 7 36 36 H 1.07988 * 119.75585 * 180.02562 * 12 11 10 37 37 H 1.07997 * 119.87469 * 179.72146 * 13 12 11 38 38 H 1.07998 * 120.13251 * 179.97438 * 14 13 12 39 39 H 0.97001 * 119.99627 * 179.97438 * 19 18 16 40 40 H 1.08997 * 109.17091 * 78.49503 * 24 6 5 41 41 H 1.09004 * 109.16406 * 197.69819 * 24 6 5 42 42 H 1.08994 * 109.46335 * 200.17514 * 25 24 6 43 43 H 1.09005 * 109.27309 * 80.32007 * 25 24 6 44 44 H 1.09002 * 109.58583 * 331.50757 * 26 25 24 45 45 H 1.08994 * 109.70359 * 211.14623 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6352 1.9709 -0.8631 5 6 3.5863 1.4430 -0.0734 6 7 4.0626 2.8009 -0.2614 7 16 4.2728 3.3651 -1.8041 8 8 4.5975 2.2361 -2.6034 9 8 5.1069 4.5111 -1.7021 10 6 2.7052 3.9394 -2.3674 11 6 2.0397 3.2638 -3.3649 12 6 0.8061 3.7129 -3.8098 13 6 0.2287 4.8461 -3.2572 14 6 0.8764 5.5379 -2.2596 15 6 2.1291 5.0906 -1.7996 16 6 2.8034 5.7928 -0.7742 17 1 3.8830 5.8002 -0.7446 18 6 2.0720 6.4782 0.2024 19 7 0.7774 6.3101 0.2880 20 14 2.9441 7.6330 1.3835 21 1 3.5129 8.7776 0.6273 22 1 1.9748 8.1369 2.3893 23 1 4.0380 6.9026 2.0728 24 6 4.3723 3.6955 0.8698 25 6 3.3051 3.5730 1.9726 26 6 1.9316 3.4515 1.3439 27 8 1.6339 2.0740 1.1580 28 1 -0.3634 -1.0236 -0.0915 29 1 -0.3633 0.4326 0.9322 30 1 -0.3633 0.5910 -0.8407 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.9104 0.8253 -0.9110 34 1 3.9939 1.0403 0.8539 35 1 2.4799 2.3798 -3.8022 36 1 0.2908 3.1764 -4.5926 37 1 -0.7308 5.1897 -3.6145 38 1 0.4251 6.4204 -1.8308 39 1 0.2705 6.7849 0.9651 40 1 5.3471 3.4306 1.2792 41 1 4.4026 4.7253 0.5137 42 1 3.3364 4.4578 2.6082 43 1 3.5088 2.6868 2.5736 44 1 1.9247 3.9602 0.3798 45 1 1.1862 3.9013 1.9996 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601408437.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:36 Heat of formation + Delta-G solvation = -115.590056 kcal Electronic energy + Delta-G solvation = -30921.611079 eV Core-core repulsion = 27030.149052 eV Total energy + Delta-G solvation = -3891.462027 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.62427 -39.35223 -38.25074 -36.79760 -36.54853 -35.69812 -35.04942 -32.29862 -32.00619 -31.34345 -28.77749 -27.41899 -27.00703 -24.07682 -23.35554 -22.91123 -22.04569 -21.82117 -19.77225 -19.41220 -18.86402 -17.89155 -17.56272 -17.28549 -17.03751 -16.66535 -16.07462 -16.02610 -15.22734 -15.14006 -14.89041 -14.84873 -14.49559 -14.42759 -14.16440 -13.91742 -13.66417 -13.52366 -13.21748 -13.11057 -13.00110 -12.96338 -12.88813 -12.77988 -12.55633 -12.32346 -12.18182 -12.12566 -11.99146 -11.80615 -11.64933 -11.48568 -11.27370 -10.99623 -10.89219 -10.36657 -9.84832 -9.60637 -9.37044 -8.74436 -6.58061 -0.22543 0.54825 0.99877 1.39979 1.47622 1.50080 2.16197 2.19952 2.65378 2.89856 2.97617 3.49260 3.62266 3.78858 3.94453 4.14467 4.17498 4.30034 4.32193 4.35458 4.42306 4.50953 4.55668 4.68816 4.73128 4.78810 4.86137 4.92345 5.01221 5.05091 5.06429 5.12999 5.19440 5.22068 5.28243 5.31647 5.33423 5.50256 5.52085 5.56314 5.71764 5.84854 5.91087 6.02381 6.16578 6.55112 6.73992 6.85113 6.88155 8.19417 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.007516 C = 0.006869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.706842 B = 3724.732510 C = 4075.465965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.080 3.920 4 H 0.028 0.972 5 C 0.080 3.920 6 N -0.985 5.985 7 S 2.705 3.295 8 O -1.006 7.006 9 O -0.997 6.997 10 C -0.791 4.791 11 C -0.015 4.015 12 C -0.248 4.248 13 C -0.078 4.078 14 C -0.180 4.180 15 C 0.175 3.825 16 C -0.495 4.495 17 H 0.109 0.891 18 C 0.064 3.936 19 N -0.788 5.788 20 Si 0.937 3.063 21 H -0.269 1.269 22 H -0.261 1.261 23 H -0.238 1.238 24 C 0.106 3.894 25 C -0.145 4.145 26 C 0.056 3.944 27 O -0.391 6.391 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.295 0.705 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.205 -6.549 5.502 8.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C 0.019 3.981 4 H 0.046 0.954 5 C -0.046 4.046 6 N -0.822 5.822 7 S 2.803 3.197 8 O -0.997 6.997 9 O -0.988 6.988 10 C -0.886 4.886 11 C -0.034 4.034 12 C -0.268 4.268 13 C -0.097 4.097 14 C -0.200 4.200 15 C 0.170 3.830 16 C -0.523 4.523 17 H 0.127 0.873 18 C -0.156 4.156 19 N -0.411 5.411 20 Si 0.758 3.242 21 H -0.194 1.194 22 H -0.185 1.185 23 H -0.161 1.161 24 C -0.018 4.018 25 C -0.184 4.184 26 C -0.020 4.020 27 O -0.310 6.310 28 H 0.093 0.907 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.127 0.873 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.136 0.864 38 H 0.133 0.867 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.746 -6.599 5.373 8.543 hybrid contribution -0.608 1.284 0.014 1.420 sum 0.138 -5.315 5.387 7.569 Atomic orbital electron populations 1.21635 0.95331 1.01858 1.01205 1.21542 0.96761 0.92557 1.03853 1.22218 0.93331 0.94786 0.87777 0.95444 1.22427 0.95083 0.81962 1.05127 1.57038 1.81662 1.21090 1.22362 1.00858 0.74506 0.71933 0.72359 1.93397 1.84621 1.52859 1.68822 1.93420 1.67560 1.51393 1.86387 1.30128 1.27294 1.11527 1.19612 1.20488 0.93994 0.96167 0.92795 1.20836 0.97921 1.01640 1.06388 1.21227 0.98394 0.94896 0.95159 1.21564 0.98002 1.01663 0.98772 1.17207 0.91078 0.86878 0.87828 1.20546 0.96755 1.27176 1.07816 0.87329 1.26375 0.95046 0.95425 0.98768 1.69805 1.07963 1.33404 1.29938 0.85884 0.80361 0.79473 0.78491 1.19358 1.18475 1.16058 1.22102 0.98407 0.94332 0.86922 1.22336 0.94986 1.03436 0.97680 1.22473 0.95141 0.81390 1.02995 1.86097 1.79716 1.24854 1.40303 0.90740 0.93240 0.94504 0.89274 0.89554 0.88714 0.87324 0.86483 0.85925 0.86407 0.86744 0.89348 0.90047 0.89375 0.89688 0.89600 0.89559 0.91235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.72 71.98 0.70 -3.00 16 2 C -0.11 -2.81 5.65 30.59 0.17 -2.64 16 3 C 0.08 2.64 2.67 31.21 0.08 2.72 16 4 H 0.03 1.10 7.07 -2.39 -0.02 1.09 16 5 C 0.08 2.51 5.11 87.25 0.45 2.95 16 6 N -0.98 -36.04 2.48 -511.50 -1.27 -37.31 16 7 S 2.70 118.41 5.10 -56.49 -0.29 118.12 16 8 O -1.01 -45.16 15.55 -128.00 -1.99 -47.15 16 9 O -1.00 -48.07 14.25 -128.00 -1.82 -49.89 16 10 C -0.79 -36.83 5.11 22.73 0.12 -36.72 16 11 C -0.01 -0.64 9.35 22.22 0.21 -0.44 16 12 C -0.25 -10.27 10.05 22.46 0.23 -10.05 16 13 C -0.08 -3.35 10.02 22.22 0.22 -3.13 16 14 C -0.18 -8.59 8.65 22.73 0.20 -8.39 16 15 C 0.17 8.49 4.45 -21.29 -0.09 8.39 16 16 C -0.50 -23.20 5.13 23.46 0.12 -23.08 16 17 H 0.11 5.26 3.89 -2.91 -0.01 5.25 16 18 C 0.06 2.75 4.24 85.26 0.36 3.11 16 19 N -0.79 -34.05 10.67 21.83 0.23 -33.81 16 20 Si 0.94 33.06 29.57 68.60 2.03 35.09 16 21 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.26 -8.59 7.11 99.48 0.71 -7.88 16 23 H -0.24 -7.75 7.11 99.48 0.71 -7.04 16 24 C 0.11 3.62 5.57 86.51 0.48 4.10 16 25 C -0.15 -4.50 5.79 30.44 0.18 -4.33 16 26 C 0.06 2.05 6.01 71.50 0.43 2.48 16 27 O -0.39 -13.79 8.99 -117.87 -1.06 -14.85 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.05 1.37 7.91 -2.39 -0.02 1.35 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.09 2.02 8.14 -2.38 -0.02 2.00 16 32 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.09 2.89 6.91 -2.39 -0.02 2.87 16 34 H 0.11 2.82 8.11 -2.39 -0.02 2.80 16 35 H 0.12 4.77 7.33 -2.91 -0.02 4.75 16 36 H 0.12 4.30 8.06 -2.92 -0.02 4.28 16 37 H 0.12 4.34 8.06 -2.91 -0.02 4.32 16 38 H 0.11 5.55 6.34 -2.91 -0.02 5.54 16 39 H 0.30 11.63 8.30 -92.71 -0.77 10.86 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.09 3.40 4.25 -2.38 -0.01 3.39 16 42 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.09 2.32 8.01 -2.38 -0.02 2.30 16 44 H 0.09 3.63 3.29 -2.39 -0.01 3.63 16 45 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -56.53 349.98 0.68 -55.85 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: 1.01 Total: 41.96 kcal Atomic # 6 Polarization: -71.86 SS G_CDS: 3.85 Total: -68.01 kcal Atomic # 7 Polarization: -70.09 SS G_CDS: -1.04 Total: -71.13 kcal Atomic # 8 Polarization: -107.01 SS G_CDS: -4.88 Total: -111.89 kcal Atomic # 14 Polarization: 33.06 SS G_CDS: 2.03 Total: 35.09 kcal Atomic # 16 Polarization: 118.41 SS G_CDS: -0.29 Total: 118.12 kcal Total: -56.53 0.68 -55.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601408437.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.738 kcal (2) G-P(sol) polarization free energy of solvation -56.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds