Wall clock time and date at job start Tue Mar 31 2020 23:36:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99896 * 2 1 4 4 H 1.08998 * 109.45996 * 29.97458 * 3 2 1 5 5 C 1.53039 * 109.46061 * 270.00542 * 3 2 1 6 6 C 1.53196 * 109.31503 * 178.61146 * 5 3 2 7 7 N 1.46932 * 108.77136 * 54.63298 * 6 5 3 8 8 S 1.65596 * 120.62848 * 126.36825 * 7 6 5 9 9 O 1.42108 * 106.40390 * 344.08794 * 8 7 6 10 10 O 1.42096 * 106.40463 * 211.16450 * 8 7 6 11 11 C 1.76199 * 107.21638 * 97.62597 * 8 7 6 12 12 C 1.37647 * 120.12767 * 115.88922 * 11 8 7 13 13 C 1.38615 * 120.24571 * 180.25460 * 12 11 8 14 14 C 1.38648 * 120.50304 * 359.44359 * 13 12 11 15 15 C 1.37603 * 120.24947 * 0.27793 * 14 13 12 16 16 C 1.40695 * 120.13006 * 295.58921 * 11 8 7 17 17 C 1.41394 * 120.24559 * 0.02562 * 16 11 8 18 18 H 1.08010 * 119.99783 * 328.54268 * 17 16 11 19 19 C 1.39941 * 120.00261 * 148.54045 * 17 16 11 20 20 N 1.30826 * 120.00355 * 348.85495 * 19 17 16 21 21 Si 1.86806 * 120.00065 * 168.85841 * 19 17 16 22 22 H 1.48502 * 109.47002 * 59.99995 * 21 19 17 23 23 H 1.48495 * 109.47104 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46839 * 299.99898 * 21 19 17 25 25 C 1.46924 * 118.74104 * 306.64681 * 7 6 5 26 26 H 1.08997 * 109.58585 * 173.14712 * 25 7 6 27 27 C 1.53004 * 109.58651 * 293.57004 * 25 7 6 28 28 C 1.52763 * 109.00858 * 53.30471 * 25 7 6 29 29 H 1.08998 * 109.46691 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46965 * 299.99299 * 1 2 3 31 31 H 1.08993 * 109.47689 * 59.99696 * 1 2 3 32 32 H 1.09003 * 109.50051 * 58.66180 * 5 3 2 33 33 H 1.09000 * 109.52444 * 298.57931 * 5 3 2 34 34 H 1.08997 * 109.58446 * 294.85374 * 6 5 3 35 35 H 1.08995 * 109.70485 * 174.49037 * 6 5 3 36 36 H 1.08001 * 119.87286 * 359.97438 * 12 11 8 37 37 H 1.08003 * 119.74345 * 179.72203 * 13 12 11 38 38 H 1.08005 * 119.87783 * 180.25364 * 14 13 12 39 39 H 1.08000 * 120.12703 * 179.97438 * 15 14 13 40 40 H 0.96992 * 120.00389 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.46975 * 59.99401 * 27 25 7 42 42 H 1.08991 * 109.47581 * 179.97438 * 27 25 7 43 43 H 1.08999 * 109.46700 * 300.00401 * 27 25 7 44 44 H 1.09000 * 109.56371 * 185.55286 * 28 25 7 45 45 H 1.09003 * 109.35590 * 65.50293 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3446 1.9993 0.5135 5 6 2.2175 1.7713 -1.4430 6 6 2.8084 3.1847 -1.4392 7 7 4.0307 3.1840 -0.6238 8 16 5.4583 3.7502 -1.2431 9 8 5.2884 3.8106 -2.6527 10 8 6.4920 3.0034 -0.6162 11 6 5.6424 5.4138 -0.6925 12 6 6.6826 5.7542 0.1422 13 6 6.8267 7.0611 0.5811 14 6 5.9339 8.0417 0.1767 15 6 4.8898 7.7254 -0.6620 16 6 4.7304 6.4007 -1.1093 17 6 3.6613 6.0640 -1.9713 18 1 3.7815 5.2734 -2.6973 19 6 2.4475 6.7549 -1.8836 20 7 2.2216 7.5548 -0.8733 21 14 1.1497 6.5351 -3.2092 22 1 0.7460 5.1075 -3.2746 23 1 -0.0350 7.3697 -2.8852 24 1 1.7064 6.9528 -4.5209 25 6 3.9636 2.6658 0.7494 26 1 4.9671 2.6214 1.1726 27 6 3.0846 3.5834 1.6016 28 6 3.3584 1.2634 0.7229 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.2601 1.7787 -1.9640 33 1 2.9025 1.0920 -1.9502 34 1 2.0861 3.8816 -1.0141 35 1 3.0495 3.4850 -2.4589 36 1 7.3865 4.9992 0.4599 37 1 7.6433 7.3183 1.2395 38 1 6.0581 9.0577 0.5216 39 1 4.1953 8.4908 -0.9754 40 1 1.3805 8.0340 -0.8128 41 1 2.0806 3.6202 1.1787 42 1 3.0357 3.1970 2.6195 43 1 3.5108 4.5865 1.6133 44 1 3.2132 0.9092 1.7434 45 1 4.0330 0.5887 0.1957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601409717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:01 Heat of formation + Delta-G solvation = -107.992567 kcal Electronic energy + Delta-G solvation = -29788.395895 eV Core-core repulsion = 25897.263320 eV Total energy + Delta-G solvation = -3891.132575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.27111 -37.62486 -36.78034 -36.39138 -34.90466 -33.91569 -31.85806 -31.20073 -30.22045 -29.58855 -27.49196 -26.25770 -25.58017 -23.28168 -22.40820 -21.63114 -21.17585 -19.69722 -17.99268 -17.60942 -17.36547 -16.43943 -16.00914 -15.49444 -15.38814 -14.99846 -14.84313 -14.42248 -14.21001 -13.86655 -13.44540 -13.32527 -13.11495 -13.03598 -12.85769 -12.75158 -12.28538 -11.99240 -11.81478 -11.58678 -11.43460 -11.32115 -11.30978 -11.19826 -11.18166 -11.14118 -10.89149 -10.83276 -10.62827 -10.61476 -10.39254 -10.00636 -9.90412 -9.48021 -9.40907 -9.26161 -8.42193 -8.03254 -7.60613 -7.07679 -4.81091 1.47127 2.31410 2.69395 2.91411 2.95502 3.06152 3.71298 3.72153 3.85987 4.35746 4.71647 4.85422 4.96709 5.16838 5.21432 5.31129 5.33835 5.37610 5.46983 5.49132 5.58283 5.63120 5.66718 5.78279 5.94485 5.95145 6.02314 6.13135 6.18945 6.20488 6.23516 6.32243 6.38295 6.51951 6.67436 6.75415 6.79324 6.93023 7.02799 7.25147 7.26160 7.31472 7.48773 7.66032 7.77420 7.91241 8.31329 8.49071 8.62406 9.86540 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.006271 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.742220 B = 4464.228023 C = 5809.285283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.090 3.910 4 H 0.066 0.934 5 C -0.155 4.155 6 C 0.129 3.871 7 N -0.987 5.987 8 S 2.704 3.296 9 O -0.974 6.974 10 O -0.995 6.995 11 C -0.772 4.772 12 C -0.005 4.005 13 C -0.246 4.246 14 C -0.077 4.077 15 C -0.155 4.155 16 C 0.196 3.804 17 C -0.477 4.477 18 H 0.112 0.888 19 C 0.084 3.916 20 N -0.780 5.780 21 Si 0.902 3.098 22 H -0.255 1.255 23 H -0.276 1.276 24 H -0.258 1.258 25 C 0.156 3.844 26 H 0.099 0.901 27 C -0.164 4.164 28 C -0.119 4.119 29 H 0.081 0.919 30 H 0.039 0.961 31 H 0.040 0.960 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.286 0.714 41 H 0.058 0.942 42 H 0.057 0.943 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.633 -6.889 3.198 9.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.033 3.967 4 H 0.084 0.916 5 C -0.195 4.195 6 C 0.004 3.996 7 N -0.822 5.822 8 S 2.803 3.197 9 O -0.965 6.965 10 O -0.986 6.986 11 C -0.867 4.867 12 C -0.024 4.024 13 C -0.266 4.266 14 C -0.096 4.096 15 C -0.175 4.175 16 C 0.191 3.809 17 C -0.505 4.505 18 H 0.129 0.871 19 C -0.137 4.137 20 N -0.403 5.403 21 Si 0.725 3.275 22 H -0.179 1.179 23 H -0.201 1.201 24 H -0.182 1.182 25 C 0.049 3.951 26 H 0.117 0.883 27 C -0.223 4.223 28 C -0.159 4.159 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.113 0.887 38 H 0.111 0.889 39 H 0.138 0.862 40 H 0.097 0.903 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.142 -7.412 2.754 9.432 hybrid contribution -1.141 1.112 -0.044 1.594 sum -6.283 -6.300 2.710 9.301 Atomic orbital electron populations 1.22737 0.81657 1.02218 0.99896 1.87894 1.19175 1.28556 1.95117 1.22169 0.94906 0.83862 0.95772 0.91638 1.22459 1.01605 0.98328 0.97081 1.21426 0.86614 0.94891 0.96674 1.57663 1.25669 1.77426 1.21427 1.00981 0.71269 0.74193 0.73213 1.93463 1.85410 1.88002 1.29582 1.93435 1.55374 1.71667 1.78125 1.29911 1.12664 1.20836 1.23336 1.20249 0.94037 0.95952 0.92207 1.20501 1.03143 0.94129 1.08861 1.20907 0.94884 0.97211 0.96616 1.21463 0.97826 0.96929 1.01256 1.16980 0.87687 0.89981 0.86202 1.20380 0.95738 1.17967 1.16450 0.87075 1.25929 0.99749 0.92729 0.95316 1.69780 1.24796 1.19831 1.25926 0.86429 0.79051 0.80198 0.81796 1.17938 1.20098 1.18182 1.20715 1.00608 0.91767 0.81961 0.88271 1.22191 1.00608 1.00939 0.98518 1.21860 0.95635 0.97428 1.00931 0.90067 0.94254 0.94143 0.91194 0.90860 0.90949 0.88095 0.87486 0.88719 0.88866 0.86164 0.90270 0.92260 0.92362 0.90983 0.90506 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.42 16 2 O -0.39 -5.25 10.35 -35.23 -0.36 -5.62 16 3 C 0.09 1.24 2.37 -26.69 -0.06 1.17 16 4 H 0.07 0.85 6.14 -51.93 -0.32 0.53 16 5 C -0.16 -2.28 5.69 -26.61 -0.15 -2.43 16 6 C 0.13 2.24 4.48 -3.70 -0.02 2.23 16 7 N -0.99 -18.16 2.95 -106.70 -0.31 -18.48 16 8 S 2.70 58.98 5.09 -107.50 -0.55 58.43 16 9 O -0.97 -23.21 14.34 -57.17 -0.82 -24.03 16 10 O -1.00 -22.51 15.79 -57.17 -0.90 -23.41 16 11 C -0.77 -18.08 5.96 -38.87 -0.23 -18.32 16 12 C 0.00 -0.10 9.54 -39.66 -0.38 -0.48 16 13 C -0.25 -5.29 10.05 -39.29 -0.39 -5.68 16 14 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 15 C -0.16 -3.73 8.64 -38.87 -0.34 -4.06 16 16 C 0.20 4.82 5.51 -106.83 -0.59 4.23 16 17 C -0.48 -11.32 6.72 -37.74 -0.25 -11.57 16 18 H 0.11 2.65 4.11 -52.48 -0.22 2.44 16 19 C 0.08 1.85 5.23 -17.34 -0.09 1.76 16 20 N -0.78 -17.65 11.05 55.55 0.61 -17.04 16 21 Si 0.90 16.87 29.57 -169.99 -5.03 11.85 16 22 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 23 H -0.28 -5.01 7.11 56.52 0.40 -4.61 16 24 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 25 C 0.16 2.48 3.21 -67.82 -0.22 2.26 16 26 H 0.10 1.59 7.11 -51.93 -0.37 1.22 16 27 C -0.16 -2.45 9.02 37.16 0.34 -2.12 16 28 C -0.12 -1.66 5.18 -26.84 -0.14 -1.80 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.04 0.36 8.09 -51.93 -0.42 -0.06 16 31 H 0.04 0.39 7.85 -51.93 -0.41 -0.02 16 32 H 0.07 0.92 7.85 -51.93 -0.41 0.51 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.07 1.25 7.48 -51.93 -0.39 0.87 16 35 H 0.10 1.88 5.53 -51.93 -0.29 1.60 16 36 H 0.11 2.22 7.33 -52.49 -0.38 1.84 16 37 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 39 H 0.12 2.92 6.45 -52.49 -0.34 2.58 16 40 H 0.29 5.93 8.30 -40.82 -0.34 5.59 16 41 H 0.06 0.87 5.74 -51.93 -0.30 0.57 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 44 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 359.81 15.07 5.42 5.42 Total: -1.00 -27.87 359.81 -10.12 -37.99 By element: Atomic # 1 Polarization: 16.73 SS G_CDS: -6.35 Total: 10.38 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: -1.83 Total: -35.49 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.30 Total: -35.51 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -2.09 Total: -53.06 kcal Atomic # 14 Polarization: 16.87 SS G_CDS: -5.03 Total: 11.85 kcal Atomic # 16 Polarization: 58.98 SS G_CDS: -0.55 Total: 58.43 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -27.87 -10.12 -37.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601409717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.001 kcal (2) G-P(sol) polarization free energy of solvation -27.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds