Wall clock time and date at job start Tue Mar 31 2020 23:36:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 113.99896 * 2 1 4 4 H 1.08998 * 109.45996 * 29.97458 * 3 2 1 5 5 C 1.53039 * 109.46061 * 270.00542 * 3 2 1 6 6 C 1.53196 * 109.31503 * 178.61146 * 5 3 2 7 7 N 1.46932 * 108.77136 * 54.63298 * 6 5 3 8 8 S 1.65596 * 120.62848 * 126.36825 * 7 6 5 9 9 O 1.42108 * 106.40390 * 344.08794 * 8 7 6 10 10 O 1.42096 * 106.40463 * 211.16450 * 8 7 6 11 11 C 1.76199 * 107.21638 * 97.62597 * 8 7 6 12 12 C 1.37647 * 120.12767 * 115.88922 * 11 8 7 13 13 C 1.38615 * 120.24571 * 180.25460 * 12 11 8 14 14 C 1.38648 * 120.50304 * 359.44359 * 13 12 11 15 15 C 1.37603 * 120.24947 * 0.27793 * 14 13 12 16 16 C 1.40695 * 120.13006 * 295.58921 * 11 8 7 17 17 C 1.41394 * 120.24559 * 0.02562 * 16 11 8 18 18 H 1.08010 * 119.99783 * 328.54268 * 17 16 11 19 19 C 1.39941 * 120.00261 * 148.54045 * 17 16 11 20 20 N 1.30826 * 120.00355 * 348.85495 * 19 17 16 21 21 Si 1.86806 * 120.00065 * 168.85841 * 19 17 16 22 22 H 1.48502 * 109.47002 * 59.99995 * 21 19 17 23 23 H 1.48495 * 109.47104 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46839 * 299.99898 * 21 19 17 25 25 C 1.46924 * 118.74104 * 306.64681 * 7 6 5 26 26 H 1.08997 * 109.58585 * 173.14712 * 25 7 6 27 27 C 1.53004 * 109.58651 * 293.57004 * 25 7 6 28 28 C 1.52763 * 109.00858 * 53.30471 * 25 7 6 29 29 H 1.08998 * 109.46691 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46965 * 299.99299 * 1 2 3 31 31 H 1.08993 * 109.47689 * 59.99696 * 1 2 3 32 32 H 1.09003 * 109.50051 * 58.66180 * 5 3 2 33 33 H 1.09000 * 109.52444 * 298.57931 * 5 3 2 34 34 H 1.08997 * 109.58446 * 294.85374 * 6 5 3 35 35 H 1.08995 * 109.70485 * 174.49037 * 6 5 3 36 36 H 1.08001 * 119.87286 * 359.97438 * 12 11 8 37 37 H 1.08003 * 119.74345 * 179.72203 * 13 12 11 38 38 H 1.08005 * 119.87783 * 180.25364 * 14 13 12 39 39 H 1.08000 * 120.12703 * 179.97438 * 15 14 13 40 40 H 0.96992 * 120.00389 * 179.97438 * 20 19 17 41 41 H 1.09002 * 109.46975 * 59.99401 * 27 25 7 42 42 H 1.08991 * 109.47581 * 179.97438 * 27 25 7 43 43 H 1.08999 * 109.46700 * 300.00401 * 27 25 7 44 44 H 1.09000 * 109.56371 * 185.55286 * 28 25 7 45 45 H 1.09003 * 109.35590 * 65.50293 * 28 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3446 1.9993 0.5135 5 6 2.2175 1.7713 -1.4430 6 6 2.8084 3.1847 -1.4392 7 7 4.0307 3.1840 -0.6238 8 16 5.4583 3.7502 -1.2431 9 8 5.2884 3.8106 -2.6527 10 8 6.4920 3.0034 -0.6162 11 6 5.6424 5.4138 -0.6925 12 6 6.6826 5.7542 0.1422 13 6 6.8267 7.0611 0.5811 14 6 5.9339 8.0417 0.1767 15 6 4.8898 7.7254 -0.6620 16 6 4.7304 6.4007 -1.1093 17 6 3.6613 6.0640 -1.9713 18 1 3.7815 5.2734 -2.6973 19 6 2.4475 6.7549 -1.8836 20 7 2.2216 7.5548 -0.8733 21 14 1.1497 6.5351 -3.2092 22 1 0.7460 5.1075 -3.2746 23 1 -0.0350 7.3697 -2.8852 24 1 1.7064 6.9528 -4.5209 25 6 3.9636 2.6658 0.7494 26 1 4.9671 2.6214 1.1726 27 6 3.0846 3.5834 1.6016 28 6 3.3584 1.2634 0.7229 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.2601 1.7787 -1.9640 33 1 2.9025 1.0920 -1.9502 34 1 2.0861 3.8816 -1.0141 35 1 3.0495 3.4850 -2.4589 36 1 7.3865 4.9992 0.4599 37 1 7.6433 7.3183 1.2395 38 1 6.0581 9.0577 0.5216 39 1 4.1953 8.4908 -0.9754 40 1 1.3805 8.0340 -0.8128 41 1 2.0806 3.6202 1.1787 42 1 3.0357 3.1970 2.6195 43 1 3.5108 4.5865 1.6133 44 1 3.2132 0.9092 1.7434 45 1 4.0330 0.5887 0.1957 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601409717.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:00 Heat of formation + Delta-G solvation = -124.492123 kcal Electronic energy + Delta-G solvation = -29789.111369 eV Core-core repulsion = 25897.263320 eV Total energy + Delta-G solvation = -3891.848049 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.43616 -39.36513 -38.17562 -37.89451 -36.70545 -35.63364 -33.14414 -32.44509 -31.93667 -31.34651 -28.64897 -27.32835 -27.15951 -24.54344 -23.68942 -23.29761 -22.92063 -21.07845 -19.60147 -19.21711 -18.89151 -17.82006 -17.42212 -17.13337 -16.87554 -16.09089 -16.00380 -15.95923 -15.73274 -15.12593 -15.06335 -14.88802 -14.54752 -14.42488 -14.24296 -14.07371 -13.72564 -13.58343 -13.11818 -13.06406 -12.99850 -12.95876 -12.90695 -12.80091 -12.52144 -12.48484 -12.30514 -12.15339 -12.15177 -11.98860 -11.68781 -11.62394 -11.21379 -11.15104 -10.99323 -10.42156 -9.92258 -9.73652 -9.38735 -8.76056 -6.59245 -0.20741 0.55000 0.98959 1.38741 1.47598 1.50725 2.16496 2.21883 2.64522 2.81431 3.00877 3.48553 3.60044 3.72157 3.90070 4.09371 4.14695 4.28369 4.31072 4.34210 4.44955 4.49662 4.51309 4.59090 4.59920 4.70001 4.74315 4.83593 4.86390 4.91238 4.99767 5.01822 5.05516 5.12901 5.19727 5.24303 5.30629 5.39930 5.52392 5.55500 5.70864 5.83862 5.90996 6.00879 6.15555 6.31655 6.53166 6.73892 6.85159 8.20390 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010893 B = 0.006271 C = 0.004819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2569.742220 B = 4464.228023 C = 5809.285283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.095 3.905 4 H 0.077 0.923 5 C -0.151 4.151 6 C 0.128 3.872 7 N -0.983 5.983 8 S 2.715 3.285 9 O -1.000 7.000 10 O -1.007 7.007 11 C -0.790 4.790 12 C -0.018 4.018 13 C -0.248 4.248 14 C -0.077 4.077 15 C -0.181 4.181 16 C 0.172 3.828 17 C -0.494 4.494 18 H 0.103 0.897 19 C 0.058 3.942 20 N -0.799 5.799 21 Si 0.950 3.050 22 H -0.238 1.238 23 H -0.263 1.263 24 H -0.267 1.267 25 C 0.149 3.851 26 H 0.094 0.906 27 C -0.156 4.156 28 C -0.115 4.115 29 H 0.098 0.902 30 H 0.050 0.950 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.110 0.890 40 H 0.294 0.706 41 H 0.063 0.937 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.101 0.899 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.160 -7.778 4.175 11.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.037 3.963 4 H 0.094 0.906 5 C -0.191 4.191 6 C 0.003 3.997 7 N -0.821 5.821 8 S 2.814 3.186 9 O -0.991 6.991 10 O -0.998 6.998 11 C -0.884 4.884 12 C -0.038 4.038 13 C -0.268 4.268 14 C -0.096 4.096 15 C -0.201 4.201 16 C 0.167 3.833 17 C -0.522 4.522 18 H 0.121 0.879 19 C -0.162 4.162 20 N -0.423 5.423 21 Si 0.770 3.230 22 H -0.161 1.161 23 H -0.187 1.187 24 H -0.192 1.192 25 C 0.044 3.956 26 H 0.112 0.888 27 C -0.215 4.215 28 C -0.154 4.154 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.101 0.899 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.128 0.872 40 H 0.105 0.895 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.059 0.941 44 H 0.120 0.880 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.658 -8.294 3.749 11.277 hybrid contribution -0.647 1.388 -0.292 1.559 sum -7.305 -6.906 3.457 10.631 Atomic orbital electron populations 1.22969 0.79892 1.03698 1.00693 1.87873 1.21118 1.28032 1.95147 1.22065 0.94975 0.84470 0.94779 0.90557 1.22427 1.02059 0.96147 0.98422 1.21458 0.86008 0.96747 0.95490 1.57458 1.24910 1.76950 1.22739 1.00487 0.71866 0.73685 0.72583 1.93418 1.86043 1.88209 1.31414 1.93405 1.56540 1.71669 1.78197 1.30196 1.13002 1.21661 1.23553 1.20552 0.94081 0.96938 0.92224 1.20872 1.03659 0.93555 1.08740 1.21234 0.93996 0.98792 0.95562 1.21506 0.98948 0.96709 1.02966 1.17270 0.88482 0.90538 0.86981 1.20433 0.96520 1.18590 1.16666 0.87887 1.26516 1.00812 0.92096 0.96742 1.69803 1.25626 1.19998 1.26873 0.85703 0.77185 0.81308 0.78792 1.16136 1.18679 1.19161 1.20951 1.00927 0.93212 0.80530 0.88803 1.22124 1.00143 0.99038 1.00160 1.21818 0.95610 0.95547 1.02443 0.88365 0.93121 0.93658 0.89309 0.91594 0.91059 0.89899 0.86314 0.85617 0.86103 0.87193 0.89464 0.91851 0.89311 0.94115 0.88024 0.91554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.82 113.37 1.23 1.63 16 2 O -0.40 -9.77 10.35 -148.98 -1.54 -11.31 16 3 C 0.09 2.37 2.37 30.62 0.07 2.45 16 4 H 0.08 1.76 6.14 -2.39 -0.01 1.74 16 5 C -0.15 -4.22 5.69 30.67 0.17 -4.05 16 6 C 0.13 4.42 4.48 86.36 0.39 4.80 16 7 N -0.98 -36.35 2.95 -491.50 -1.45 -37.80 16 8 S 2.71 121.11 5.09 -56.49 -0.29 120.82 16 9 O -1.00 -49.24 14.34 -128.00 -1.84 -51.08 16 10 O -1.01 -46.16 15.79 -128.00 -2.02 -48.18 16 11 C -0.79 -37.80 5.96 22.73 0.14 -37.67 16 12 C -0.02 -0.82 9.54 22.22 0.21 -0.60 16 13 C -0.25 -10.43 10.05 22.46 0.23 -10.20 16 14 C -0.08 -3.36 10.02 22.22 0.22 -3.13 16 15 C -0.18 -8.89 8.64 22.73 0.20 -8.69 16 16 C 0.17 8.65 5.51 -21.29 -0.12 8.54 16 17 C -0.49 -24.02 6.72 23.46 0.16 -23.86 16 18 H 0.10 5.09 4.11 -2.91 -0.01 5.08 16 19 C 0.06 2.57 5.23 85.26 0.45 3.01 16 20 N -0.80 -36.39 11.05 21.83 0.24 -36.15 16 21 Si 0.95 33.97 29.57 68.60 2.03 36.00 16 22 H -0.24 -7.80 7.11 99.48 0.71 -7.10 16 23 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 24 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 25 C 0.15 4.62 3.21 44.83 0.14 4.76 16 26 H 0.09 2.98 7.11 -2.39 -0.02 2.97 16 27 C -0.16 -4.48 9.02 71.98 0.65 -3.83 16 28 C -0.12 -2.99 5.18 30.53 0.16 -2.83 16 29 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.05 0.76 8.09 -2.39 -0.02 0.75 16 31 H 0.04 0.74 7.85 -2.39 -0.02 0.72 16 32 H 0.09 2.13 7.85 -2.39 -0.02 2.11 16 33 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.44 7.48 -2.39 -0.02 2.43 16 35 H 0.08 3.15 5.53 -2.39 -0.01 3.14 16 36 H 0.12 4.92 7.33 -2.91 -0.02 4.90 16 37 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 38 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.11 5.49 6.45 -2.91 -0.02 5.47 16 40 H 0.29 12.10 8.30 -92.71 -0.77 11.33 16 41 H 0.06 1.75 5.74 -2.39 -0.01 1.73 16 42 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 45 H 0.07 1.84 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -60.42 359.81 0.43 -59.99 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: 1.00 Total: 37.39 kcal Atomic # 6 Polarization: -73.97 SS G_CDS: 4.29 Total: -69.68 kcal Atomic # 7 Polarization: -72.74 SS G_CDS: -1.21 Total: -73.95 kcal Atomic # 8 Polarization: -105.17 SS G_CDS: -5.40 Total: -110.57 kcal Atomic # 14 Polarization: 33.97 SS G_CDS: 2.03 Total: 36.00 kcal Atomic # 16 Polarization: 121.11 SS G_CDS: -0.29 Total: 120.82 kcal Total: -60.42 0.43 -59.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601409717.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.505 kcal (2) G-P(sol) polarization free energy of solvation -60.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds