Wall clock time and date at job start Tue Mar 31 2020 23:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00009 * 2 1 4 4 H 1.08999 * 109.44813 * 330.03186 * 3 2 1 5 5 C 1.53046 * 109.46003 * 89.99916 * 3 2 1 6 6 C 1.53192 * 109.33814 * 181.36724 * 5 3 2 7 7 N 1.46935 * 108.77495 * 305.41603 * 6 5 3 8 8 S 1.65595 * 120.60426 * 233.53363 * 7 6 5 9 9 O 1.42097 * 106.40206 * 214.49858 * 8 7 6 10 10 O 1.42102 * 106.40355 * 347.41883 * 8 7 6 11 11 C 1.76202 * 107.21901 * 100.95818 * 8 7 6 12 12 C 1.37637 * 120.12418 * 116.28921 * 11 8 7 13 13 C 1.38619 * 120.24474 * 179.97438 * 12 11 8 14 14 C 1.38658 * 120.50307 * 0.02562 * 13 12 11 15 15 C 1.37604 * 120.24648 * 0.02798 * 14 13 12 16 16 C 1.40698 * 120.12640 * 296.01597 * 11 8 7 17 17 C 1.41391 * 120.24416 * 359.97438 * 16 11 8 18 18 H 1.07996 * 119.99961 * 329.14980 * 17 16 11 19 19 C 1.39950 * 119.99728 * 149.15114 * 17 16 11 20 20 N 1.30817 * 120.00383 * 350.69627 * 19 17 16 21 21 Si 1.86806 * 119.99852 * 170.69401 * 19 17 16 22 22 H 1.48501 * 109.46717 * 90.00001 * 21 19 17 23 23 H 1.48493 * 109.47075 * 210.00169 * 21 19 17 24 24 H 1.48503 * 109.47070 * 330.00319 * 21 19 17 25 25 C 1.46932 * 118.76362 * 53.55254 * 7 6 5 26 26 H 1.09000 * 109.58134 * 66.19993 * 25 7 6 27 27 C 1.52996 * 109.58147 * 186.62401 * 25 7 6 28 28 C 1.53041 * 109.45965 * 210.06682 * 3 2 1 29 29 H 1.09000 * 109.47451 * 300.00212 * 1 2 3 30 30 H 1.08999 * 109.47198 * 60.00140 * 1 2 3 31 31 H 1.09009 * 109.47027 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.49462 * 301.33564 * 5 3 2 33 33 H 1.08999 * 109.49778 * 61.40474 * 5 3 2 34 34 H 1.09000 * 109.58590 * 65.16890 * 6 5 3 35 35 H 1.09000 * 109.58716 * 185.58973 * 6 5 3 36 36 H 1.07994 * 119.87920 * 0.02562 * 12 11 8 37 37 H 1.08000 * 119.74753 * 180.02562 * 13 12 11 38 38 H 1.07994 * 119.87649 * 179.97438 * 14 13 12 39 39 H 1.07993 * 120.12606 * 179.97438 * 15 14 13 40 40 H 0.97005 * 120.00605 * 179.97438 * 20 19 17 41 41 H 1.09012 * 109.46611 * 165.58215 * 27 25 7 42 42 H 1.09001 * 109.47774 * 285.58112 * 27 25 7 43 43 H 1.08998 * 109.47537 * 45.58978 * 27 25 7 44 44 H 1.08995 * 109.49743 * 298.56365 * 28 3 2 45 45 H 1.08999 * 109.50046 * 58.66095 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3444 1.9991 -0.5134 5 6 2.2175 1.7712 1.4430 6 6 2.8090 3.1844 1.4399 7 7 4.0308 3.1839 0.6238 8 16 5.4581 3.7515 1.2425 9 8 6.1459 4.3689 0.1632 10 8 5.1313 4.4317 2.4466 11 6 6.4189 2.3498 1.7080 12 6 7.6156 2.0927 1.0785 13 6 8.3738 0.9909 1.4430 14 6 7.9370 0.1360 2.4435 15 6 6.7433 0.3730 3.0856 16 6 5.9686 1.4923 2.7285 17 6 4.7439 1.7500 3.3865 18 1 4.3991 2.7663 3.5069 19 6 3.9787 0.6881 3.8817 20 7 4.2978 -0.5444 3.5808 21 14 2.5014 1.0305 4.9726 22 1 1.2888 1.1850 4.1294 23 1 2.3086 -0.1013 5.9143 24 1 2.7325 2.2800 5.7410 25 6 3.9623 2.6708 -0.7513 26 1 3.3340 3.3259 -1.3548 27 6 5.3701 2.6131 -1.3478 28 6 3.3584 1.2633 -0.7230 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.2602 1.7786 1.9640 33 1 2.9024 1.0914 1.9499 34 1 2.0868 3.8818 1.0153 35 1 3.0506 3.4816 2.4604 36 1 7.9656 2.7521 0.2982 37 1 9.3117 0.7970 0.9440 38 1 8.5356 -0.7196 2.7192 39 1 6.4049 -0.2944 3.8643 40 1 3.7677 -1.2805 3.9243 41 1 5.3567 2.0050 -2.2524 42 1 5.7025 3.6218 -1.5930 43 1 6.0539 2.1712 -0.6232 44 1 4.0329 0.5886 -0.1958 45 1 3.2131 0.9091 -1.7435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601409718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:05 Heat of formation + Delta-G solvation = -94.048033 kcal Electronic energy + Delta-G solvation = -30578.307711 eV Core-core repulsion = 26687.779817 eV Total energy + Delta-G solvation = -3890.527894 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -38.99587 -37.61228 -36.79919 -36.40721 -34.88967 -33.97164 -31.99524 -31.06798 -30.22544 -29.59254 -27.07487 -26.10782 -25.52205 -23.29519 -21.83818 -21.57205 -21.16471 -20.03204 -18.01908 -17.73927 -16.89087 -16.16941 -15.98630 -15.63972 -15.33621 -15.00765 -14.79135 -14.50882 -14.13740 -13.82304 -13.36159 -13.21933 -13.15139 -12.84193 -12.76891 -12.48391 -12.30934 -12.02015 -11.76158 -11.45465 -11.36488 -11.27795 -11.26786 -11.16242 -11.03713 -11.00006 -10.77346 -10.59757 -10.43324 -10.38047 -10.31039 -9.88723 -9.85398 -9.29883 -9.25183 -9.15311 -8.40872 -7.96485 -7.57053 -7.03383 -4.77868 1.50785 2.34205 2.70290 2.93907 2.99389 3.06551 3.73225 3.78971 3.99939 4.38046 4.74173 4.98662 5.15064 5.23824 5.31984 5.39078 5.45794 5.51208 5.54236 5.62361 5.68759 5.72594 5.77099 5.87334 6.03190 6.07234 6.10606 6.19578 6.23650 6.31249 6.37021 6.41225 6.61885 6.72643 6.76722 6.89112 6.96910 7.01677 7.06496 7.29852 7.34732 7.50922 7.51574 7.69889 7.80848 7.94088 8.34549 8.51070 8.65741 9.88727 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009867 B = 0.007832 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.124971 B = 3574.081623 C = 4670.898586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.382 6.382 3 C 0.098 3.902 4 H 0.051 0.949 5 C -0.174 4.174 6 C 0.131 3.869 7 N -0.989 5.989 8 S 2.706 3.294 9 O -0.993 6.993 10 O -0.978 6.978 11 C -0.773 4.773 12 C -0.006 4.006 13 C -0.246 4.246 14 C -0.079 4.079 15 C -0.154 4.154 16 C 0.194 3.806 17 C -0.474 4.474 18 H 0.110 0.890 19 C 0.085 3.915 20 N -0.774 5.774 21 Si 0.893 3.107 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.253 1.253 25 C 0.169 3.831 26 H 0.069 0.931 27 C -0.200 4.200 28 C -0.125 4.125 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.116 0.884 34 H 0.055 0.945 35 H 0.102 0.898 36 H 0.108 0.892 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.124 0.876 40 H 0.287 0.713 41 H 0.067 0.933 42 H 0.100 0.900 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.670 0.658 -5.627 8.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.301 6.301 3 C 0.041 3.959 4 H 0.069 0.931 5 C -0.213 4.213 6 C 0.006 3.994 7 N -0.825 5.825 8 S 2.805 3.195 9 O -0.983 6.983 10 O -0.969 6.969 11 C -0.868 4.868 12 C -0.026 4.026 13 C -0.266 4.266 14 C -0.098 4.098 15 C -0.173 4.173 16 C 0.189 3.811 17 C -0.502 4.502 18 H 0.128 0.872 19 C -0.136 4.136 20 N -0.397 5.397 21 Si 0.716 3.284 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.176 1.176 25 C 0.063 3.937 26 H 0.087 0.913 27 C -0.258 4.258 28 C -0.164 4.164 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.134 0.866 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.142 0.858 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.118 0.882 43 H 0.094 0.906 44 H 0.104 0.896 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -6.450 1.175 -5.524 8.573 hybrid contribution -0.768 -0.881 0.635 1.330 sum -7.218 0.294 -4.889 8.723 Atomic orbital electron populations 1.22706 0.82148 1.02118 0.99450 1.87957 1.18673 1.28389 1.95037 1.22043 0.94259 0.83642 0.95980 0.93083 1.22764 1.02239 0.99039 0.97228 1.21314 0.85596 0.96017 0.96474 1.57731 1.24235 1.80030 1.20489 1.00979 0.72015 0.74268 0.72209 1.93447 1.73825 1.76149 1.54914 1.93452 1.83745 1.73204 1.46503 1.29890 1.13853 1.27964 1.15093 1.20213 0.92309 0.94942 0.95097 1.20498 1.01589 0.99596 1.04911 1.20908 0.96073 0.97059 0.95712 1.21532 0.93648 1.00306 1.01847 1.16975 0.90216 0.88447 0.85448 1.20376 1.03054 0.96040 1.30771 0.87205 1.25884 0.99249 0.94338 0.94146 1.69769 1.36171 0.99852 1.33925 0.86575 0.81200 0.80134 0.80503 1.18104 1.19824 1.17585 1.20725 0.97625 0.93492 0.81889 0.91258 1.22818 0.95240 1.05407 1.02343 1.22043 0.96054 0.97923 1.00414 0.94373 0.94582 0.90179 0.92027 0.86609 0.92673 0.88039 0.87412 0.88795 0.88924 0.85819 0.90182 0.91417 0.88168 0.90606 0.89553 0.91227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.82 101.05 1.09 1.50 16 2 O -0.38 -6.33 10.35 -35.23 -0.36 -6.70 16 3 C 0.10 1.57 2.57 -26.69 -0.07 1.50 16 4 H 0.05 0.70 7.78 -51.93 -0.40 0.30 16 5 C -0.17 -3.06 4.76 -26.61 -0.13 -3.19 16 6 C 0.13 2.31 5.44 -3.71 -0.02 2.29 16 7 N -0.99 -18.47 3.20 -106.47 -0.34 -18.81 16 8 S 2.71 58.81 4.46 -107.50 -0.48 58.33 16 9 O -0.99 -21.61 13.09 -57.17 -0.75 -22.36 16 10 O -0.98 -23.45 14.44 -57.17 -0.83 -24.28 16 11 C -0.77 -18.05 5.11 -38.87 -0.20 -18.24 16 12 C -0.01 -0.13 7.89 -39.66 -0.31 -0.44 16 13 C -0.25 -5.28 10.05 -39.29 -0.39 -5.67 16 14 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 15 C -0.15 -3.72 8.65 -38.87 -0.34 -4.06 16 16 C 0.19 4.78 5.53 -106.83 -0.59 4.19 16 17 C -0.47 -11.34 5.94 -37.74 -0.22 -11.57 16 18 H 0.11 2.66 3.93 -52.49 -0.21 2.45 16 19 C 0.08 1.91 3.35 -17.34 -0.06 1.85 16 20 N -0.77 -17.82 10.89 55.55 0.60 -17.22 16 21 Si 0.89 17.21 28.47 -169.99 -4.84 12.37 16 22 H -0.26 -4.63 6.52 56.52 0.37 -4.26 16 23 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 24 H -0.25 -4.95 7.11 56.52 0.40 -4.55 16 25 C 0.17 2.74 3.48 -67.60 -0.24 2.51 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 C -0.20 -3.31 7.73 37.16 0.29 -3.02 16 28 C -0.13 -2.04 4.98 -26.61 -0.13 -2.17 16 29 H 0.04 0.46 7.85 -51.93 -0.41 0.05 16 30 H 0.04 0.38 8.08 -51.93 -0.42 -0.04 16 31 H 0.08 0.87 8.14 -51.92 -0.42 0.44 16 32 H 0.06 1.00 7.26 -51.93 -0.38 0.63 16 33 H 0.12 2.39 4.31 -51.93 -0.22 2.17 16 34 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.93 5.15 -51.93 -0.27 1.66 16 36 H 0.11 2.20 7.22 -52.49 -0.38 1.82 16 37 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 39 H 0.12 3.04 6.31 -52.49 -0.33 2.70 16 40 H 0.29 6.10 8.30 -40.82 -0.34 5.76 16 41 H 0.07 0.93 8.08 -51.92 -0.42 0.51 16 42 H 0.10 1.70 6.23 -51.93 -0.32 1.38 16 43 H 0.08 1.42 4.08 -51.93 -0.21 1.21 16 44 H 0.09 1.67 8.14 -51.93 -0.42 1.25 16 45 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 343.37 15.07 5.17 5.17 Total: -1.00 -27.62 343.37 -9.63 -37.25 By element: Atomic # 1 Polarization: 18.99 SS G_CDS: -6.10 Total: 12.90 kcal Atomic # 6 Polarization: -34.96 SS G_CDS: -1.72 Total: -36.67 kcal Atomic # 7 Polarization: -36.29 SS G_CDS: 0.26 Total: -36.02 kcal Atomic # 8 Polarization: -51.40 SS G_CDS: -1.94 Total: -53.34 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -4.84 Total: 12.37 kcal Atomic # 16 Polarization: 58.81 SS G_CDS: -0.48 Total: 58.33 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.62 -9.63 -37.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601409718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.793 kcal (2) G-P(sol) polarization free energy of solvation -27.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds