Wall clock time and date at job start Tue Mar 31 2020 23:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42898 * 114.00009 * 2 1 4 4 H 1.08999 * 109.44813 * 330.03186 * 3 2 1 5 5 C 1.53046 * 109.46003 * 89.99916 * 3 2 1 6 6 C 1.53192 * 109.33814 * 181.36724 * 5 3 2 7 7 N 1.46935 * 108.77495 * 305.41603 * 6 5 3 8 8 S 1.65595 * 120.60426 * 233.53363 * 7 6 5 9 9 O 1.42097 * 106.40206 * 214.49858 * 8 7 6 10 10 O 1.42102 * 106.40355 * 347.41883 * 8 7 6 11 11 C 1.76202 * 107.21901 * 100.95818 * 8 7 6 12 12 C 1.37637 * 120.12418 * 116.28921 * 11 8 7 13 13 C 1.38619 * 120.24474 * 179.97438 * 12 11 8 14 14 C 1.38658 * 120.50307 * 0.02562 * 13 12 11 15 15 C 1.37604 * 120.24648 * 0.02798 * 14 13 12 16 16 C 1.40698 * 120.12640 * 296.01597 * 11 8 7 17 17 C 1.41391 * 120.24416 * 359.97438 * 16 11 8 18 18 H 1.07996 * 119.99961 * 329.14980 * 17 16 11 19 19 C 1.39950 * 119.99728 * 149.15114 * 17 16 11 20 20 N 1.30817 * 120.00383 * 350.69627 * 19 17 16 21 21 Si 1.86806 * 119.99852 * 170.69401 * 19 17 16 22 22 H 1.48501 * 109.46717 * 90.00001 * 21 19 17 23 23 H 1.48493 * 109.47075 * 210.00169 * 21 19 17 24 24 H 1.48503 * 109.47070 * 330.00319 * 21 19 17 25 25 C 1.46932 * 118.76362 * 53.55254 * 7 6 5 26 26 H 1.09000 * 109.58134 * 66.19993 * 25 7 6 27 27 C 1.52996 * 109.58147 * 186.62401 * 25 7 6 28 28 C 1.53041 * 109.45965 * 210.06682 * 3 2 1 29 29 H 1.09000 * 109.47451 * 300.00212 * 1 2 3 30 30 H 1.08999 * 109.47198 * 60.00140 * 1 2 3 31 31 H 1.09009 * 109.47027 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.49462 * 301.33564 * 5 3 2 33 33 H 1.08999 * 109.49778 * 61.40474 * 5 3 2 34 34 H 1.09000 * 109.58590 * 65.16890 * 6 5 3 35 35 H 1.09000 * 109.58716 * 185.58973 * 6 5 3 36 36 H 1.07994 * 119.87920 * 0.02562 * 12 11 8 37 37 H 1.08000 * 119.74753 * 180.02562 * 13 12 11 38 38 H 1.07994 * 119.87649 * 179.97438 * 14 13 12 39 39 H 1.07993 * 120.12606 * 179.97438 * 15 14 13 40 40 H 0.97005 * 120.00605 * 179.97438 * 20 19 17 41 41 H 1.09012 * 109.46611 * 165.58215 * 27 25 7 42 42 H 1.09001 * 109.47774 * 285.58112 * 27 25 7 43 43 H 1.08998 * 109.47537 * 45.58978 * 27 25 7 44 44 H 1.08995 * 109.49743 * 298.56365 * 28 3 2 45 45 H 1.08999 * 109.50046 * 58.66095 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3444 1.9991 -0.5134 5 6 2.2175 1.7712 1.4430 6 6 2.8090 3.1844 1.4399 7 7 4.0308 3.1839 0.6238 8 16 5.4581 3.7515 1.2425 9 8 6.1459 4.3689 0.1632 10 8 5.1313 4.4317 2.4466 11 6 6.4189 2.3498 1.7080 12 6 7.6156 2.0927 1.0785 13 6 8.3738 0.9909 1.4430 14 6 7.9370 0.1360 2.4435 15 6 6.7433 0.3730 3.0856 16 6 5.9686 1.4923 2.7285 17 6 4.7439 1.7500 3.3865 18 1 4.3991 2.7663 3.5069 19 6 3.9787 0.6881 3.8817 20 7 4.2978 -0.5444 3.5808 21 14 2.5014 1.0305 4.9726 22 1 1.2888 1.1850 4.1294 23 1 2.3086 -0.1013 5.9143 24 1 2.7325 2.2800 5.7410 25 6 3.9623 2.6708 -0.7513 26 1 3.3340 3.3259 -1.3548 27 6 5.3701 2.6131 -1.3478 28 6 3.3584 1.2633 -0.7230 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.2602 1.7786 1.9640 33 1 2.9024 1.0914 1.9499 34 1 2.0868 3.8818 1.0153 35 1 3.0506 3.4816 2.4604 36 1 7.9656 2.7521 0.2982 37 1 9.3117 0.7970 0.9440 38 1 8.5356 -0.7196 2.7192 39 1 6.4049 -0.2944 3.8643 40 1 3.7677 -1.2805 3.9243 41 1 5.3567 2.0050 -2.2524 42 1 5.7025 3.6218 -1.5930 43 1 6.0539 2.1712 -0.6232 44 1 4.0329 0.5886 -0.1958 45 1 3.2131 0.9091 -1.7435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601409718.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:04 Heat of formation + Delta-G solvation = -111.270018 kcal Electronic energy + Delta-G solvation = -30579.054513 eV Core-core repulsion = 26687.779817 eV Total energy + Delta-G solvation = -3891.274696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.27802 -39.33037 -38.36418 -37.80811 -36.64774 -35.69242 -33.34515 -32.38836 -31.96723 -31.34224 -28.33085 -27.29221 -27.16660 -24.62564 -23.46749 -22.98034 -22.91012 -21.38119 -19.64655 -19.46783 -18.47686 -17.57664 -17.34607 -17.25514 -16.94874 -16.18781 -16.10532 -15.95295 -15.70160 -15.25239 -15.06249 -14.89901 -14.50440 -14.40555 -14.08366 -13.93929 -13.81915 -13.49855 -13.18972 -13.04397 -12.96372 -12.93567 -12.83293 -12.67260 -12.51720 -12.39224 -12.19152 -12.14945 -11.88782 -11.80314 -11.64825 -11.57454 -11.29100 -10.97056 -10.88543 -10.35509 -9.89936 -9.64954 -9.35438 -8.73907 -6.56635 -0.13902 0.58195 1.00056 1.34729 1.42728 1.48188 2.13715 2.25475 2.65817 2.85836 3.06416 3.52599 3.64668 3.78536 3.97173 4.09809 4.19201 4.34058 4.35331 4.43753 4.45921 4.51250 4.53259 4.58069 4.61401 4.73139 4.78715 4.82343 4.85805 4.89342 4.99606 5.02498 5.10042 5.20047 5.29704 5.32839 5.40936 5.55917 5.58451 5.65012 5.73612 5.87893 5.95244 6.03692 6.17574 6.41129 6.55364 6.75018 6.88225 8.20426 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009867 B = 0.007832 C = 0.005993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2837.124971 B = 3574.081623 C = 4670.898586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.100 3.900 4 H 0.084 0.916 5 C -0.175 4.175 6 C 0.125 3.875 7 N -0.986 5.986 8 S 2.718 3.282 9 O -0.996 6.996 10 O -1.007 7.007 11 C -0.789 4.789 12 C -0.014 4.014 13 C -0.251 4.251 14 C -0.080 4.080 15 C -0.183 4.183 16 C 0.168 3.832 17 C -0.488 4.488 18 H 0.102 0.898 19 C 0.065 3.935 20 N -0.796 5.796 21 Si 0.935 3.065 22 H -0.234 1.234 23 H -0.267 1.267 24 H -0.260 1.260 25 C 0.165 3.835 26 H 0.107 0.893 27 C -0.202 4.202 28 C -0.119 4.119 29 H 0.041 0.959 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.292 0.708 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.049 0.951 44 H 0.044 0.956 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.408 0.943 -7.331 11.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.329 6.329 3 C 0.043 3.957 4 H 0.102 0.898 5 C -0.214 4.214 6 C 0.001 3.999 7 N -0.824 5.824 8 S 2.816 3.184 9 O -0.987 6.987 10 O -0.997 6.997 11 C -0.883 4.883 12 C -0.033 4.033 13 C -0.271 4.271 14 C -0.098 4.098 15 C -0.203 4.203 16 C 0.164 3.836 17 C -0.516 4.516 18 H 0.119 0.881 19 C -0.155 4.155 20 N -0.420 5.420 21 Si 0.755 3.245 22 H -0.157 1.157 23 H -0.192 1.192 24 H -0.184 1.184 25 C 0.060 3.940 26 H 0.125 0.875 27 C -0.260 4.260 28 C -0.158 4.158 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.103 0.897 41 H 0.114 0.886 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.170 1.442 -7.233 11.007 hybrid contribution -0.205 -1.005 1.096 1.501 sum -8.375 0.437 -6.137 10.392 Atomic orbital electron populations 1.22934 0.80075 1.03380 1.00683 1.87927 1.21064 1.28826 1.95132 1.22031 0.94585 0.84217 0.94866 0.89842 1.22720 1.01844 0.98252 0.98582 1.21478 0.85681 0.97008 0.95777 1.57553 1.23314 1.79993 1.21537 1.00517 0.72441 0.73765 0.71650 1.93439 1.74461 1.76251 1.54536 1.93407 1.84288 1.73952 1.48097 1.30245 1.14846 1.28197 1.14986 1.20506 0.92099 0.95465 0.95244 1.20864 1.02561 0.99058 1.04588 1.21215 0.95522 0.97785 0.95297 1.21563 0.95020 1.00927 1.02814 1.17276 0.90920 0.89152 0.86282 1.20377 1.03324 0.96038 1.31818 0.88071 1.26386 1.00869 0.93781 0.94441 1.69808 1.37178 1.00528 1.34494 0.85952 0.79555 0.79653 0.79355 1.15743 1.19177 1.18402 1.21022 0.98072 0.94143 0.80789 0.87507 1.22818 0.94976 1.05356 1.02871 1.21976 0.95585 0.96999 1.01288 0.94063 0.92296 0.89093 0.90835 0.89939 0.88756 0.90107 0.86005 0.85795 0.86452 0.87068 0.89705 0.88620 0.88664 0.93194 0.93735 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.82 113.37 1.23 1.78 16 2 O -0.41 -12.74 10.35 -148.98 -1.54 -14.28 16 3 C 0.10 2.94 2.57 30.62 0.08 3.02 16 4 H 0.08 1.91 7.78 -2.39 -0.02 1.89 16 5 C -0.17 -5.90 4.76 30.67 0.15 -5.76 16 6 C 0.13 4.22 5.44 86.36 0.47 4.69 16 7 N -0.99 -35.75 3.20 -490.75 -1.57 -37.32 16 8 S 2.72 118.72 4.46 -56.49 -0.25 118.47 16 9 O -1.00 -42.94 13.09 -128.00 -1.68 -44.61 16 10 O -1.01 -49.24 14.44 -128.00 -1.85 -51.09 16 11 C -0.79 -37.65 5.11 22.73 0.12 -37.54 16 12 C -0.01 -0.60 7.89 22.22 0.18 -0.43 16 13 C -0.25 -10.65 10.05 22.46 0.23 -10.43 16 14 C -0.08 -3.54 10.02 22.22 0.22 -3.32 16 15 C -0.18 -9.20 8.65 22.73 0.20 -9.01 16 16 C 0.17 8.59 5.53 -21.29 -0.12 8.47 16 17 C -0.49 -24.11 5.94 23.46 0.14 -23.97 16 18 H 0.10 5.09 3.93 -2.91 -0.01 5.08 16 19 C 0.06 2.96 3.35 85.26 0.29 3.25 16 20 N -0.80 -37.79 10.89 21.83 0.24 -37.55 16 21 Si 0.93 35.19 28.47 68.60 1.95 37.15 16 22 H -0.23 -7.89 6.52 99.48 0.65 -7.24 16 23 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 24 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 25 C 0.16 4.96 3.48 44.97 0.16 5.12 16 26 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 27 C -0.20 -6.36 7.73 71.98 0.56 -5.80 16 28 C -0.12 -3.66 4.98 30.67 0.15 -3.51 16 29 H 0.04 0.86 7.85 -2.39 -0.02 0.84 16 30 H 0.06 1.01 8.08 -2.39 -0.02 0.99 16 31 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 32 H 0.07 2.23 7.26 -2.39 -0.02 2.22 16 33 H 0.08 3.41 4.31 -2.39 -0.01 3.40 16 34 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.08 3.07 5.15 -2.39 -0.01 3.05 16 36 H 0.12 4.95 7.22 -2.91 -0.02 4.92 16 37 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 38 H 0.12 4.50 8.06 -2.91 -0.02 4.48 16 39 H 0.11 5.73 6.31 -2.91 -0.02 5.71 16 40 H 0.29 12.71 8.30 -92.70 -0.77 11.94 16 41 H 0.10 2.40 8.08 -2.38 -0.02 2.38 16 42 H 0.09 3.08 6.23 -2.39 -0.01 3.06 16 43 H 0.05 1.84 4.08 -2.39 -0.01 1.83 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -61.69 343.37 0.29 -61.39 By element: Atomic # 1 Polarization: 40.33 SS G_CDS: 0.96 Total: 41.29 kcal Atomic # 6 Polarization: -77.46 SS G_CDS: 4.03 Total: -73.43 kcal Atomic # 7 Polarization: -73.54 SS G_CDS: -1.33 Total: -74.88 kcal Atomic # 8 Polarization: -104.92 SS G_CDS: -5.07 Total: -109.99 kcal Atomic # 14 Polarization: 35.19 SS G_CDS: 1.95 Total: 37.15 kcal Atomic # 16 Polarization: 118.72 SS G_CDS: -0.25 Total: 118.47 kcal Total: -61.69 0.29 -61.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601409718.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.875 kcal (2) G-P(sol) polarization free energy of solvation -61.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds