Wall clock time and date at job start Tue Mar 31 2020 23:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42909 * 113.99891 * 2 1 4 4 H 1.09006 * 109.44452 * 329.96781 * 3 2 1 5 5 C 1.53038 * 109.45835 * 89.93170 * 3 2 1 6 6 C 1.52764 * 109.38158 * 181.26538 * 5 3 2 7 7 N 1.46927 * 109.00500 * 305.58513 * 6 5 3 8 8 S 1.65598 * 120.63271 * 233.58335 * 7 6 5 9 9 O 1.42103 * 106.40411 * 150.02065 * 8 7 6 10 10 O 1.42103 * 106.40132 * 17.10223 * 8 7 6 11 11 C 1.76202 * 107.21998 * 263.56505 * 8 7 6 12 12 C 1.37639 * 120.12148 * 244.71398 * 11 8 7 13 13 C 1.38624 * 120.24505 * 180.02562 * 12 11 8 14 14 C 1.38657 * 120.49785 * 359.97438 * 13 12 11 15 15 C 1.37600 * 120.25009 * 0.02562 * 14 13 12 16 16 C 1.40697 * 120.12896 * 64.73685 * 11 8 7 17 17 C 1.41393 * 120.24115 * 359.70122 * 16 11 8 18 18 H 1.07995 * 120.00055 * 31.14351 * 17 16 11 19 19 C 1.39954 * 119.99732 * 211.14237 * 17 16 11 20 20 N 1.30824 * 119.99822 * 10.72747 * 19 17 16 21 21 Si 1.86795 * 120.00053 * 190.72602 * 19 17 16 22 22 H 1.48500 * 109.46947 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47178 * 119.99824 * 21 19 17 24 24 H 1.48502 * 109.47322 * 240.00493 * 21 19 17 25 25 C 1.46926 * 118.73705 * 53.31172 * 7 6 5 26 26 H 1.09006 * 109.58735 * 186.85238 * 25 7 6 27 27 C 1.53002 * 109.58739 * 66.43160 * 25 7 6 28 28 C 1.53034 * 109.46247 * 210.00355 * 3 2 1 29 29 H 1.08993 * 109.47474 * 60.00083 * 1 2 3 30 30 H 1.09001 * 109.46604 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.46970 * 299.99544 * 1 2 3 32 32 H 1.09005 * 109.49903 * 301.33743 * 5 3 2 33 33 H 1.09002 * 109.49932 * 61.40355 * 5 3 2 34 34 H 1.09000 * 109.50884 * 185.70737 * 6 5 3 35 35 H 1.08994 * 109.43246 * 65.42435 * 6 5 3 36 36 H 1.07999 * 119.88542 * 359.97438 * 12 11 8 37 37 H 1.07989 * 119.74934 * 179.97438 * 13 12 11 38 38 H 1.07996 * 119.87290 * 179.97438 * 14 13 12 39 39 H 1.08001 * 120.12207 * 180.02562 * 15 14 13 40 40 H 0.97002 * 119.99729 * 179.97438 * 20 19 17 41 41 H 1.08999 * 109.47307 * 59.99405 * 27 25 7 42 42 H 1.08994 * 109.47356 * 180.02562 * 27 25 7 43 43 H 1.08999 * 109.46786 * 299.99714 * 27 25 7 44 44 H 1.08994 * 109.50111 * 58.65701 * 28 3 2 45 45 H 1.09008 * 109.51903 * 298.58107 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3448 1.9990 -0.5144 5 6 2.2160 1.7720 1.4430 6 6 2.8081 3.1802 1.4410 7 7 4.0300 3.1843 0.6251 8 16 5.4570 3.7509 1.2455 9 8 6.4927 3.0273 0.5951 10 8 5.2974 3.7797 2.6572 11 6 5.6212 5.4275 0.7291 12 6 6.6444 5.7929 -0.1159 13 6 6.7764 7.1113 -0.5233 14 6 5.8812 8.0758 -0.0864 15 6 4.8507 7.7331 0.7586 16 6 4.7072 6.3979 1.1792 17 6 3.6488 6.0329 2.0427 18 1 3.7792 5.2220 2.7440 19 6 2.4321 6.7225 1.9886 20 7 2.1962 7.5568 1.0089 21 14 1.1451 6.4514 3.3150 22 1 1.6523 5.4653 4.3027 23 1 0.8618 7.7381 4.0001 24 1 -0.1022 5.9348 2.6964 25 6 3.9630 2.6707 -0.7499 26 1 4.9664 2.6294 -1.1738 27 6 3.0820 3.5898 -1.5985 28 6 3.3591 1.2631 -0.7215 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.2580 1.7796 1.9630 33 1 2.9003 1.0924 1.9509 34 1 3.0497 3.4749 2.4622 35 1 2.0843 3.8773 1.0188 36 1 7.3477 5.0500 -0.4621 37 1 7.5824 7.3893 -1.1861 38 1 5.9937 9.1001 -0.4098 39 1 4.1543 8.4860 1.0973 40 1 1.3528 8.0345 0.9712 41 1 3.5065 4.5937 -1.6070 42 1 3.0333 3.2068 -2.6177 43 1 2.0782 3.6233 -1.1750 44 1 3.2149 0.9085 -1.7420 45 1 4.0334 0.5885 -0.1938 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601409719.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:08 Heat of formation + Delta-G solvation = -124.342830 kcal Electronic energy + Delta-G solvation = -29784.134157 eV Core-core repulsion = 25892.292581 eV Total energy + Delta-G solvation = -3891.841575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.43278 -39.36685 -38.17950 -37.89235 -36.70669 -35.64053 -33.14477 -32.44965 -31.93865 -31.34268 -28.66365 -27.33611 -27.15785 -24.53280 -23.69298 -23.28993 -22.92070 -21.07889 -19.61069 -19.21794 -18.89726 -17.82040 -17.42168 -17.13878 -16.87407 -16.09244 -15.99943 -15.95770 -15.73873 -15.11877 -15.06635 -14.88634 -14.55390 -14.44345 -14.24389 -14.07679 -13.72251 -13.58294 -13.12393 -13.06642 -12.99955 -12.95722 -12.89336 -12.82555 -12.51884 -12.49129 -12.30397 -12.16400 -12.12996 -11.99894 -11.67868 -11.61662 -11.21098 -11.16897 -10.98818 -10.41783 -9.92882 -9.73509 -9.38937 -8.76521 -6.59447 -0.20918 0.54691 0.97729 1.38375 1.46384 1.52080 2.16600 2.22014 2.63825 2.81481 3.00927 3.48440 3.59683 3.72184 3.90177 4.09157 4.15025 4.28455 4.31066 4.34117 4.44663 4.49825 4.51201 4.59214 4.60281 4.70188 4.74408 4.83613 4.86113 4.91381 4.99831 5.02025 5.05475 5.12725 5.20241 5.24289 5.30664 5.39792 5.51868 5.55580 5.71019 5.84080 5.91131 6.01091 6.15612 6.31801 6.53735 6.73720 6.85155 8.19964 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.006277 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.424880 B = 4459.830018 C = 5815.500392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.402 6.402 3 C 0.094 3.906 4 H 0.077 0.923 5 C -0.152 4.152 6 C 0.128 3.872 7 N -0.983 5.983 8 S 2.714 3.286 9 O -1.007 7.007 10 O -1.001 7.001 11 C -0.790 4.790 12 C -0.018 4.018 13 C -0.249 4.249 14 C -0.077 4.077 15 C -0.182 4.182 16 C 0.170 3.830 17 C -0.493 4.493 18 H 0.104 0.896 19 C 0.057 3.943 20 N -0.799 5.799 21 Si 0.950 3.050 22 H -0.255 1.255 23 H -0.265 1.265 24 H -0.248 1.248 25 C 0.149 3.851 26 H 0.095 0.905 27 C -0.156 4.156 28 C -0.115 4.115 29 H 0.050 0.950 30 H 0.098 0.902 31 H 0.045 0.955 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.119 0.881 37 H 0.126 0.874 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.294 0.706 41 H 0.040 0.960 42 H 0.089 0.911 43 H 0.063 0.937 44 H 0.101 0.899 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.163 -7.693 -4.328 11.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.322 6.322 3 C 0.037 3.963 4 H 0.095 0.905 5 C -0.191 4.191 6 C 0.002 3.998 7 N -0.821 5.821 8 S 2.813 3.187 9 O -0.998 6.998 10 O -0.991 6.991 11 C -0.884 4.884 12 C -0.038 4.038 13 C -0.269 4.269 14 C -0.096 4.096 15 C -0.201 4.201 16 C 0.166 3.834 17 C -0.521 4.521 18 H 0.122 0.878 19 C -0.162 4.162 20 N -0.423 5.423 21 Si 0.770 3.230 22 H -0.178 1.178 23 H -0.190 1.190 24 H -0.172 1.172 25 C 0.043 3.957 26 H 0.113 0.887 27 C -0.215 4.215 28 C -0.154 4.154 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.137 0.863 37 H 0.144 0.856 38 H 0.139 0.861 39 H 0.129 0.871 40 H 0.105 0.895 41 H 0.059 0.941 42 H 0.107 0.893 43 H 0.082 0.918 44 H 0.119 0.881 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.651 -8.211 -3.904 11.265 hybrid contribution -0.658 1.364 0.305 1.544 sum -7.308 -6.848 -3.599 10.642 Atomic orbital electron populations 1.22967 0.79895 1.03696 1.00702 1.87873 1.21116 1.28037 1.95148 1.22071 0.94974 0.84473 0.94793 0.90542 1.22366 1.02124 0.96199 0.98447 1.21370 0.86062 0.96824 0.95505 1.57465 1.24968 1.77069 1.22579 1.00498 0.71881 0.73735 0.72537 1.93405 1.56357 1.72654 1.77370 1.93420 1.86120 1.88255 1.31314 1.30191 1.13497 1.21883 1.22846 1.20550 0.94112 0.96837 0.92281 1.20876 1.03757 0.93456 1.08766 1.21237 0.93994 0.98852 0.95511 1.21524 0.99142 0.96581 1.02887 1.17288 0.88394 0.90721 0.87007 1.20509 0.96674 1.17303 1.17599 0.87848 1.26524 1.00748 0.92243 0.96717 1.69816 1.25274 1.19462 1.27730 0.85608 0.78193 0.80080 0.79132 1.17837 1.18987 1.17173 1.21054 1.00959 0.93207 0.80471 0.88733 1.22122 1.00133 0.99013 1.00216 1.21888 0.95606 0.95481 1.02427 0.93133 0.88376 0.93631 0.89149 0.91629 0.89912 0.91044 0.86307 0.85624 0.86110 0.87070 0.89457 0.94075 0.89262 0.91846 0.88057 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 10.82 113.37 1.23 1.63 16 2 O -0.40 -9.75 10.35 -148.98 -1.54 -11.29 16 3 C 0.09 2.36 2.37 30.62 0.07 2.43 16 4 H 0.08 1.75 6.13 -2.38 -0.01 1.74 16 5 C -0.15 -4.23 5.68 30.53 0.17 -4.06 16 6 C 0.13 4.39 4.44 86.22 0.38 4.77 16 7 N -0.98 -36.36 2.96 -491.54 -1.45 -37.81 16 8 S 2.71 121.31 5.11 -56.49 -0.29 121.02 16 9 O -1.01 -46.16 15.75 -128.00 -2.02 -48.18 16 10 O -1.00 -49.51 14.37 -128.00 -1.84 -51.34 16 11 C -0.79 -37.85 5.96 22.73 0.14 -37.72 16 12 C -0.02 -0.81 9.53 22.22 0.21 -0.60 16 13 C -0.25 -10.45 10.05 22.46 0.23 -10.22 16 14 C -0.08 -3.36 10.02 22.22 0.22 -3.14 16 15 C -0.18 -8.90 8.64 22.73 0.20 -8.70 16 16 C 0.17 8.59 5.52 -21.29 -0.12 8.48 16 17 C -0.49 -24.01 6.69 23.46 0.16 -23.85 16 18 H 0.10 5.15 4.02 -2.91 -0.01 5.14 16 19 C 0.06 2.54 5.24 85.26 0.45 2.98 16 20 N -0.80 -36.34 10.99 21.83 0.24 -36.10 16 21 Si 0.95 34.04 29.57 68.60 2.03 36.07 16 22 H -0.26 -9.32 7.11 99.48 0.71 -8.61 16 23 H -0.27 -9.33 7.11 99.48 0.71 -8.63 16 24 H -0.25 -8.03 7.11 99.48 0.71 -7.33 16 25 C 0.15 4.58 3.23 44.97 0.15 4.73 16 26 H 0.09 3.00 7.08 -2.38 -0.02 2.98 16 27 C -0.16 -4.46 9.03 71.98 0.65 -3.81 16 28 C -0.11 -2.97 5.20 30.67 0.16 -2.81 16 29 H 0.05 0.76 8.08 -2.39 -0.02 0.74 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 0.74 7.84 -2.39 -0.02 0.72 16 32 H 0.09 2.14 7.84 -2.38 -0.02 2.12 16 33 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.08 3.17 5.45 -2.39 -0.01 3.15 16 35 H 0.07 2.44 7.48 -2.39 -0.02 2.42 16 36 H 0.12 4.92 7.33 -2.91 -0.02 4.90 16 37 H 0.13 4.42 8.06 -2.92 -0.02 4.39 16 38 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 39 H 0.11 5.56 6.40 -2.91 -0.02 5.54 16 40 H 0.29 11.99 8.30 -92.71 -0.77 11.22 16 41 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.06 1.74 5.74 -2.39 -0.01 1.72 16 44 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -60.76 359.49 0.42 -60.33 By element: Atomic # 1 Polarization: 36.18 SS G_CDS: 1.00 Total: 37.18 kcal Atomic # 6 Polarization: -74.17 SS G_CDS: 4.29 Total: -69.88 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -1.21 Total: -73.91 kcal Atomic # 8 Polarization: -105.42 SS G_CDS: -5.40 Total: -110.82 kcal Atomic # 14 Polarization: 34.04 SS G_CDS: 2.03 Total: 36.07 kcal Atomic # 16 Polarization: 121.31 SS G_CDS: -0.29 Total: 121.02 kcal Total: -60.76 0.42 -60.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601409719.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.009 kcal (2) G-P(sol) polarization free energy of solvation -60.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds