Wall clock time and date at job start Tue Mar 31 2020 23:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 114.00017 * 2 1 4 4 H 1.08992 * 109.46087 * 29.96688 * 3 2 1 5 5 C 1.53047 * 109.45526 * 269.99637 * 3 2 1 6 6 C 1.53189 * 109.31136 * 178.61587 * 5 3 2 7 7 N 1.46926 * 108.77733 * 54.63062 * 6 5 3 8 8 S 1.65603 * 120.63250 * 126.41073 * 7 6 5 9 9 O 1.42098 * 106.40673 * 218.00448 * 8 7 6 10 10 O 1.42105 * 106.40018 * 350.92328 * 8 7 6 11 11 C 1.76202 * 107.21653 * 104.46057 * 8 7 6 12 12 C 1.37631 * 120.12475 * 114.86702 * 11 8 7 13 13 C 1.38624 * 120.24792 * 179.97438 * 12 11 8 14 14 C 1.38659 * 120.49698 * 0.02562 * 13 12 11 15 15 C 1.37599 * 120.24904 * 0.02562 * 14 13 12 16 16 C 1.40691 * 120.12673 * 294.58859 * 11 8 7 17 17 C 1.41406 * 120.24817 * 359.97438 * 16 11 8 18 18 H 1.07998 * 119.99292 * 326.37224 * 17 16 11 19 19 C 1.39943 * 119.99823 * 146.36897 * 17 16 11 20 20 N 1.30825 * 119.99385 * 165.84480 * 19 17 16 21 21 Si 1.86794 * 120.00591 * 345.84569 * 19 17 16 22 22 H 1.48507 * 109.47055 * 92.13296 * 21 19 17 23 23 H 1.48493 * 109.47384 * 212.13342 * 21 19 17 24 24 H 1.48501 * 109.46917 * 332.13620 * 21 19 17 25 25 C 1.46923 * 118.74141 * 306.39717 * 7 6 5 26 26 H 1.09005 * 109.58428 * 293.81803 * 25 7 6 27 27 C 1.53003 * 109.59087 * 173.53464 * 25 7 6 28 28 C 1.53037 * 109.46033 * 149.93084 * 3 2 1 29 29 H 1.08995 * 109.46582 * 60.00441 * 1 2 3 30 30 H 1.09000 * 109.47002 * 300.00763 * 1 2 3 31 31 H 1.08997 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.49397 * 298.56549 * 5 3 2 33 33 H 1.08994 * 109.49676 * 58.66569 * 5 3 2 34 34 H 1.08992 * 109.59167 * 174.41893 * 6 5 3 35 35 H 1.08997 * 109.58749 * 294.70942 * 6 5 3 36 36 H 1.07997 * 119.87867 * 0.02562 * 12 11 8 37 37 H 1.07999 * 119.74786 * 179.97438 * 13 12 11 38 38 H 1.07993 * 119.87243 * 179.97438 * 14 13 12 39 39 H 1.07997 * 120.12051 * 179.97438 * 15 14 13 40 40 H 0.97002 * 119.99835 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.47292 * 52.53018 * 27 25 7 42 42 H 1.08998 * 109.47329 * 172.53147 * 27 25 7 43 43 H 1.08998 * 109.46855 * 292.53388 * 27 25 7 44 44 H 1.09002 * 109.49475 * 301.33594 * 28 3 2 45 45 H 1.09001 * 109.49792 * 61.42627 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3447 1.9993 0.5133 5 6 2.2177 1.7711 -1.4431 6 6 2.8087 3.1844 -1.4394 7 7 4.0309 3.1838 -0.6239 8 16 5.4585 3.7508 -1.2426 9 8 6.4797 2.9000 -0.7402 10 8 5.2377 3.9645 -2.6301 11 6 5.7401 5.3389 -0.5333 12 6 6.8142 5.5412 0.3032 13 6 7.0385 6.7898 0.8622 14 6 6.1855 7.8476 0.5868 15 6 5.1048 7.6680 -0.2459 16 6 4.8713 6.4065 -0.8245 17 6 3.7682 6.2122 -1.6876 18 1 3.8443 5.5206 -2.5136 19 6 2.5781 6.9158 -1.4713 20 7 1.6631 6.9560 -2.4055 21 14 2.2959 7.7977 0.1510 22 1 2.7622 9.2031 0.0381 23 1 0.8475 7.7815 0.4778 24 1 3.0538 7.1096 1.2268 25 6 3.9624 2.6709 0.7512 26 1 3.3341 3.3260 1.3547 27 6 5.3697 2.6164 1.3492 28 6 3.3585 1.2633 0.7230 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.9030 1.0915 -1.9496 33 1 1.2604 1.7785 -1.9641 34 1 3.0505 3.4821 -2.4596 35 1 2.0855 3.8818 -1.0168 36 1 7.4853 4.7244 0.5242 37 1 7.8836 6.9394 1.5178 38 1 6.3695 8.8159 1.0281 39 1 4.4415 8.4933 -0.4586 40 1 0.8383 7.4441 -2.2558 41 1 5.8502 3.5883 1.2365 42 1 5.3053 2.3635 2.4074 43 1 5.9562 1.8588 0.8295 44 1 3.2130 0.9092 1.7436 45 1 4.0330 0.5884 0.1960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601409720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:13 Heat of formation + Delta-G solvation = -96.217119 kcal Electronic energy + Delta-G solvation = -29822.925523 eV Core-core repulsion = 25932.303570 eV Total energy + Delta-G solvation = -3890.621953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.13262 -37.92949 -36.94220 -36.45847 -34.92702 -33.87621 -32.14624 -31.24305 -30.71327 -30.17237 -27.21030 -26.26207 -25.45296 -23.37040 -22.09555 -21.77448 -21.21863 -20.33909 -18.12324 -17.78004 -16.93353 -16.43666 -16.27517 -15.73152 -15.42409 -15.15098 -14.96850 -14.53846 -14.28955 -14.06798 -13.64861 -13.55435 -13.13978 -13.02977 -12.91992 -12.66808 -12.31243 -12.15859 -12.07845 -11.86435 -11.61460 -11.39698 -11.26652 -11.23436 -11.05665 -11.01889 -10.91682 -10.71199 -10.66503 -10.40450 -10.34871 -10.05538 -9.92196 -9.51275 -9.40225 -9.31510 -8.48661 -8.23017 -7.85502 -7.21180 -4.90733 1.41118 2.03367 2.47027 2.90761 2.98889 3.09784 3.67550 3.73398 3.81536 4.20988 4.64988 4.84149 4.96066 5.05309 5.13590 5.24020 5.32722 5.36797 5.43866 5.45989 5.55752 5.63990 5.64919 5.77285 5.79875 5.87575 5.93527 6.00515 6.12207 6.17774 6.19248 6.25000 6.36758 6.42011 6.56048 6.60107 6.65497 6.82785 6.91437 7.04317 7.13901 7.25594 7.29512 7.40646 7.52290 7.79843 8.14432 8.28500 8.50722 9.76634 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011766 B = 0.006059 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.127490 B = 4620.172385 C = 5767.987000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.388 6.388 3 C 0.090 3.910 4 H 0.062 0.938 5 C -0.153 4.153 6 C 0.130 3.870 7 N -0.989 5.989 8 S 2.707 3.293 9 O -0.990 6.990 10 O -0.970 6.970 11 C -0.768 4.768 12 C 0.014 3.986 13 C -0.256 4.256 14 C -0.046 4.046 15 C -0.233 4.233 16 C 0.167 3.833 17 C -0.461 4.461 18 H 0.130 0.870 19 C 0.092 3.908 20 N -0.781 5.781 21 Si 0.902 3.098 22 H -0.266 1.266 23 H -0.286 1.286 24 H -0.242 1.242 25 C 0.162 3.838 26 H 0.071 0.929 27 C -0.190 4.190 28 C -0.120 4.120 29 H 0.041 0.959 30 H 0.039 0.961 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.290 0.710 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.099 0.901 44 H 0.075 0.925 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 -6.788 6.837 10.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.307 6.307 3 C 0.033 3.967 4 H 0.080 0.920 5 C -0.193 4.193 6 C 0.005 3.995 7 N -0.826 5.826 8 S 2.806 3.194 9 O -0.981 6.981 10 O -0.961 6.961 11 C -0.862 4.862 12 C -0.006 4.006 13 C -0.276 4.276 14 C -0.064 4.064 15 C -0.253 4.253 16 C 0.162 3.838 17 C -0.488 4.488 18 H 0.147 0.853 19 C -0.131 4.131 20 N -0.402 5.402 21 Si 0.728 3.272 22 H -0.192 1.192 23 H -0.213 1.213 24 H -0.165 1.165 25 C 0.056 3.944 26 H 0.089 0.911 27 C -0.248 4.248 28 C -0.160 4.160 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.117 0.883 39 H 0.125 0.875 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.094 0.906 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.750 -7.372 6.050 9.926 hybrid contribution -0.761 1.628 1.088 2.100 sum -3.511 -5.745 7.138 9.812 Atomic orbital electron populations 1.22745 0.81581 1.02243 0.99959 1.87895 1.19243 1.28445 1.95129 1.22138 0.94767 0.83897 0.95900 0.92026 1.22438 1.01719 0.98173 0.96950 1.21360 0.86209 0.94908 0.97013 1.57662 1.25864 1.77427 1.21614 1.01017 0.71599 0.73808 0.73020 1.93488 1.57185 1.66161 1.81223 1.93477 1.84839 1.86701 1.31038 1.30012 1.12092 1.19951 1.24105 1.20406 0.93057 0.96479 0.90638 1.20527 1.03520 0.94336 1.09223 1.20855 0.93923 0.97131 0.94520 1.21288 1.00853 0.97344 1.05792 1.17101 0.90068 0.89439 0.87210 1.20353 0.94870 1.22315 1.11224 0.85260 1.26165 0.95530 0.93236 0.98153 1.69666 1.07072 1.31095 1.32389 0.86460 0.77145 0.80607 0.83010 1.19197 1.21296 1.16467 1.20796 0.97846 0.93367 0.82436 0.91051 1.22753 0.95099 1.05479 1.01436 1.22010 0.95495 0.97618 1.00851 0.94028 0.94270 0.90046 0.90917 0.90979 0.87732 0.91040 0.86714 0.88076 0.88284 0.87527 0.89873 0.91089 0.91632 0.88245 0.90629 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 10.82 101.05 1.09 1.42 16 2 O -0.39 -5.25 10.35 -35.23 -0.36 -5.62 16 3 C 0.09 1.24 2.57 -26.69 -0.07 1.17 16 4 H 0.06 0.80 7.78 -51.93 -0.40 0.40 16 5 C -0.15 -2.27 5.70 -26.61 -0.15 -2.42 16 6 C 0.13 2.31 5.27 -3.71 -0.02 2.29 16 7 N -0.99 -18.17 3.22 -106.48 -0.34 -18.51 16 8 S 2.71 57.94 4.51 -107.50 -0.49 57.45 16 9 O -0.99 -20.95 12.71 -57.17 -0.73 -21.67 16 10 O -0.97 -23.60 14.04 -57.17 -0.80 -24.40 16 11 C -0.77 -17.32 5.44 -38.88 -0.21 -17.53 16 12 C 0.01 0.29 8.09 -39.66 -0.32 -0.03 16 13 C -0.26 -5.07 10.05 -39.28 -0.39 -5.46 16 14 C -0.05 -0.93 10.02 -39.66 -0.40 -1.33 16 15 C -0.23 -5.30 7.14 -38.87 -0.28 -5.58 16 16 C 0.17 4.01 5.05 -106.82 -0.54 3.47 16 17 C -0.46 -11.40 7.66 -37.74 -0.29 -11.69 16 18 H 0.13 3.43 4.88 -52.49 -0.26 3.18 16 19 C 0.09 2.17 5.44 -17.34 -0.09 2.07 16 20 N -0.78 -18.54 13.93 55.55 0.77 -17.76 16 21 Si 0.90 18.77 24.52 -169.99 -4.17 14.60 16 22 H -0.27 -5.44 6.64 56.52 0.38 -5.06 16 23 H -0.29 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.24 -5.14 6.89 56.52 0.39 -4.75 16 25 C 0.16 2.53 3.51 -67.60 -0.24 2.29 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 C -0.19 -2.95 7.62 37.16 0.28 -2.67 16 28 C -0.12 -1.66 5.02 -26.61 -0.13 -1.79 16 29 H 0.04 0.41 7.85 -51.93 -0.41 0.00 16 30 H 0.04 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.07 0.96 7.85 -51.93 -0.41 0.55 16 34 H 0.10 2.05 6.05 -51.93 -0.31 1.74 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.11 2.16 6.95 -52.49 -0.36 1.80 16 37 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 39 H 0.11 2.37 4.83 -52.49 -0.25 2.12 16 40 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 41 H 0.07 1.22 4.10 -51.93 -0.21 1.00 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.10 1.63 6.36 -51.93 -0.33 1.30 16 44 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 349.44 15.07 5.27 5.27 Total: -1.00 -28.11 349.44 -8.96 -37.07 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -6.35 Total: 9.37 kcal Atomic # 6 Polarization: -34.03 SS G_CDS: -1.76 Total: -35.79 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.43 Total: -36.28 kcal Atomic # 8 Polarization: -49.80 SS G_CDS: -1.89 Total: -51.69 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -4.17 Total: 14.60 kcal Atomic # 16 Polarization: 57.94 SS G_CDS: -0.49 Total: 57.45 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.11 -8.96 -37.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601409720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.147 kcal (2) G-P(sol) polarization free energy of solvation -28.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds