Wall clock time and date at job start Tue Mar 31 2020 23:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42899 * 114.00017 * 2 1 4 4 H 1.08992 * 109.46087 * 29.96688 * 3 2 1 5 5 C 1.53047 * 109.45526 * 269.99637 * 3 2 1 6 6 C 1.53189 * 109.31136 * 178.61587 * 5 3 2 7 7 N 1.46926 * 108.77733 * 54.63062 * 6 5 3 8 8 S 1.65603 * 120.63250 * 126.41073 * 7 6 5 9 9 O 1.42098 * 106.40673 * 218.00448 * 8 7 6 10 10 O 1.42105 * 106.40018 * 350.92328 * 8 7 6 11 11 C 1.76202 * 107.21653 * 104.46057 * 8 7 6 12 12 C 1.37631 * 120.12475 * 114.86702 * 11 8 7 13 13 C 1.38624 * 120.24792 * 179.97438 * 12 11 8 14 14 C 1.38659 * 120.49698 * 0.02562 * 13 12 11 15 15 C 1.37599 * 120.24904 * 0.02562 * 14 13 12 16 16 C 1.40691 * 120.12673 * 294.58859 * 11 8 7 17 17 C 1.41406 * 120.24817 * 359.97438 * 16 11 8 18 18 H 1.07998 * 119.99292 * 326.37224 * 17 16 11 19 19 C 1.39943 * 119.99823 * 146.36897 * 17 16 11 20 20 N 1.30825 * 119.99385 * 165.84480 * 19 17 16 21 21 Si 1.86794 * 120.00591 * 345.84569 * 19 17 16 22 22 H 1.48507 * 109.47055 * 92.13296 * 21 19 17 23 23 H 1.48493 * 109.47384 * 212.13342 * 21 19 17 24 24 H 1.48501 * 109.46917 * 332.13620 * 21 19 17 25 25 C 1.46923 * 118.74141 * 306.39717 * 7 6 5 26 26 H 1.09005 * 109.58428 * 293.81803 * 25 7 6 27 27 C 1.53003 * 109.59087 * 173.53464 * 25 7 6 28 28 C 1.53037 * 109.46033 * 149.93084 * 3 2 1 29 29 H 1.08995 * 109.46582 * 60.00441 * 1 2 3 30 30 H 1.09000 * 109.47002 * 300.00763 * 1 2 3 31 31 H 1.08997 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.49397 * 298.56549 * 5 3 2 33 33 H 1.08994 * 109.49676 * 58.66569 * 5 3 2 34 34 H 1.08992 * 109.59167 * 174.41893 * 6 5 3 35 35 H 1.08997 * 109.58749 * 294.70942 * 6 5 3 36 36 H 1.07997 * 119.87867 * 0.02562 * 12 11 8 37 37 H 1.07999 * 119.74786 * 179.97438 * 13 12 11 38 38 H 1.07993 * 119.87243 * 179.97438 * 14 13 12 39 39 H 1.07997 * 120.12051 * 179.97438 * 15 14 13 40 40 H 0.97002 * 119.99835 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.47292 * 52.53018 * 27 25 7 42 42 H 1.08998 * 109.47329 * 172.53147 * 27 25 7 43 43 H 1.08998 * 109.46855 * 292.53388 * 27 25 7 44 44 H 1.09002 * 109.49475 * 301.33594 * 28 3 2 45 45 H 1.09001 * 109.49792 * 61.42627 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3447 1.9993 0.5133 5 6 2.2177 1.7711 -1.4431 6 6 2.8087 3.1844 -1.4394 7 7 4.0309 3.1838 -0.6239 8 16 5.4585 3.7508 -1.2426 9 8 6.4797 2.9000 -0.7402 10 8 5.2377 3.9645 -2.6301 11 6 5.7401 5.3389 -0.5333 12 6 6.8142 5.5412 0.3032 13 6 7.0385 6.7898 0.8622 14 6 6.1855 7.8476 0.5868 15 6 5.1048 7.6680 -0.2459 16 6 4.8713 6.4065 -0.8245 17 6 3.7682 6.2122 -1.6876 18 1 3.8443 5.5206 -2.5136 19 6 2.5781 6.9158 -1.4713 20 7 1.6631 6.9560 -2.4055 21 14 2.2959 7.7977 0.1510 22 1 2.7622 9.2031 0.0381 23 1 0.8475 7.7815 0.4778 24 1 3.0538 7.1096 1.2268 25 6 3.9624 2.6709 0.7512 26 1 3.3341 3.3260 1.3547 27 6 5.3697 2.6164 1.3492 28 6 3.3585 1.2633 0.7230 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3633 0.5140 0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.9030 1.0915 -1.9496 33 1 1.2604 1.7785 -1.9641 34 1 3.0505 3.4821 -2.4596 35 1 2.0855 3.8818 -1.0168 36 1 7.4853 4.7244 0.5242 37 1 7.8836 6.9394 1.5178 38 1 6.3695 8.8159 1.0281 39 1 4.4415 8.4933 -0.4586 40 1 0.8383 7.4441 -2.2558 41 1 5.8502 3.5883 1.2365 42 1 5.3053 2.3635 2.4074 43 1 5.9562 1.8588 0.8295 44 1 3.2130 0.9092 1.7436 45 1 4.0330 0.5884 0.1960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601409720.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:36:12 Heat of formation + Delta-G solvation = -114.425851 kcal Electronic energy + Delta-G solvation = -29823.715113 eV Core-core repulsion = 25932.303570 eV Total energy + Delta-G solvation = -3891.411543 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.30703 -39.60264 -38.42220 -37.83992 -36.68820 -35.61239 -33.44274 -32.59961 -32.29687 -31.82397 -28.36682 -27.21995 -27.17361 -24.66309 -23.73931 -23.06449 -22.90165 -21.58015 -19.73409 -19.51898 -18.48248 -17.93758 -17.38949 -17.24245 -17.07010 -16.21147 -16.07017 -15.99728 -15.86962 -15.57407 -15.30618 -15.05600 -14.64599 -14.36889 -14.16133 -14.06734 -13.94798 -13.58877 -13.38576 -13.27348 -13.11921 -12.97188 -12.87073 -12.70684 -12.58624 -12.36329 -12.24640 -12.15204 -12.00623 -11.90855 -11.71503 -11.54253 -11.32912 -11.19918 -11.00377 -10.44991 -10.01112 -9.79498 -9.56337 -8.95655 -6.71272 -0.22953 0.34496 0.77700 1.24052 1.34647 1.44563 2.05859 2.18223 2.50663 2.77340 2.97219 3.31238 3.59746 3.69198 3.86393 4.02521 4.10768 4.21020 4.25775 4.31125 4.36785 4.40197 4.48910 4.57027 4.60125 4.61815 4.70605 4.77827 4.83785 4.88445 4.90359 4.91941 4.97838 5.02410 5.17827 5.21816 5.23934 5.36357 5.37992 5.51898 5.59164 5.71083 5.83224 5.88137 6.10101 6.28991 6.32112 6.54699 6.71270 8.07952 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011766 B = 0.006059 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.127490 B = 4620.172385 C = 5767.987000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.401 6.401 3 C 0.094 3.906 4 H 0.073 0.927 5 C -0.148 4.148 6 C 0.134 3.866 7 N -0.987 5.987 8 S 2.713 3.287 9 O -0.992 6.992 10 O -1.009 7.009 11 C -0.780 4.780 12 C 0.003 3.997 13 C -0.246 4.246 14 C -0.042 4.042 15 C -0.258 4.258 16 C 0.150 3.850 17 C -0.487 4.487 18 H 0.098 0.902 19 C 0.066 3.934 20 N -0.815 5.815 21 Si 0.948 3.052 22 H -0.259 1.259 23 H -0.272 1.272 24 H -0.248 1.248 25 C 0.155 3.845 26 H 0.082 0.918 27 C -0.191 4.191 28 C -0.115 4.115 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.132 0.868 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.107 0.893 40 H 0.299 0.701 41 H 0.053 0.947 42 H 0.100 0.900 43 H 0.087 0.913 44 H 0.103 0.897 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.023 -6.833 9.960 12.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.321 6.321 3 C 0.037 3.963 4 H 0.091 0.909 5 C -0.187 4.187 6 C 0.009 3.991 7 N -0.825 5.825 8 S 2.812 3.188 9 O -0.982 6.982 10 O -1.000 7.000 11 C -0.873 4.873 12 C -0.016 4.016 13 C -0.265 4.265 14 C -0.061 4.061 15 C -0.277 4.277 16 C 0.146 3.854 17 C -0.514 4.514 18 H 0.115 0.885 19 C -0.154 4.154 20 N -0.438 5.438 21 Si 0.771 3.229 22 H -0.184 1.184 23 H -0.198 1.198 24 H -0.171 1.171 25 C 0.049 3.951 26 H 0.100 0.900 27 C -0.249 4.249 28 C -0.154 4.154 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.118 0.882 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.150 0.850 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.125 0.875 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.121 0.879 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.658 -7.418 9.168 12.089 hybrid contribution -0.660 1.581 0.156 1.720 sum -3.318 -5.837 9.324 11.490 Atomic orbital electron populations 1.22974 0.79873 1.03747 1.00662 1.87874 1.21135 1.27912 1.95134 1.22043 0.95171 0.84501 0.94629 0.90913 1.22387 1.01870 0.95874 0.98589 1.21257 0.85834 0.96697 0.95317 1.57489 1.24908 1.77107 1.23019 1.00660 0.72217 0.73704 0.72238 1.93486 1.57822 1.65929 1.80979 1.93428 1.85601 1.87180 1.33778 1.30243 1.12591 1.20194 1.24273 1.20745 0.92729 0.97855 0.90318 1.21034 1.03878 0.93375 1.08249 1.21307 0.92526 0.99042 0.93196 1.21431 1.02328 0.96797 1.07189 1.17294 0.90147 0.90514 0.87481 1.20190 0.96385 1.23262 1.11605 0.88467 1.26677 0.94863 0.93471 1.00348 1.69684 1.07869 1.32480 1.33800 0.85762 0.77648 0.79841 0.79684 1.18444 1.19781 1.17135 1.21091 0.98523 0.94694 0.80756 0.89986 1.22744 0.94483 1.04090 1.03536 1.21964 0.95137 0.95959 1.02369 0.93844 0.93042 0.88237 0.91701 0.89622 0.90756 0.91570 0.84986 0.84265 0.84513 0.87531 0.88969 0.92779 0.88133 0.89411 0.87896 0.91338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 10.82 113.37 1.23 1.65 16 2 O -0.40 -10.03 10.35 -148.98 -1.54 -11.57 16 3 C 0.09 2.44 2.57 30.62 0.08 2.52 16 4 H 0.07 1.73 7.78 -2.39 -0.02 1.71 16 5 C -0.15 -4.40 5.70 30.67 0.17 -4.22 16 6 C 0.13 4.97 5.27 86.36 0.46 5.43 16 7 N -0.99 -36.93 3.22 -490.79 -1.58 -38.51 16 8 S 2.71 119.63 4.51 -56.49 -0.26 119.38 16 9 O -0.99 -42.30 12.71 -128.00 -1.63 -43.93 16 10 O -1.01 -52.25 14.04 -128.00 -1.80 -54.05 16 11 C -0.78 -35.31 5.44 22.73 0.12 -35.19 16 12 C 0.00 0.12 8.09 22.22 0.18 0.30 16 13 C -0.25 -8.87 10.05 22.46 0.23 -8.64 16 14 C -0.04 -1.60 10.02 22.22 0.22 -1.37 16 15 C -0.26 -11.45 7.14 22.73 0.16 -11.29 16 16 C 0.15 7.31 5.05 -21.29 -0.11 7.20 16 17 C -0.49 -25.15 7.66 23.46 0.18 -24.97 16 18 H 0.10 5.57 4.88 -2.91 -0.01 5.56 16 19 C 0.07 3.19 5.44 85.26 0.46 3.65 16 20 N -0.81 -40.10 13.93 21.83 0.30 -39.80 16 21 Si 0.95 38.22 24.52 68.60 1.68 39.90 16 22 H -0.26 -10.05 6.64 99.48 0.66 -9.39 16 23 H -0.27 -10.17 7.11 99.48 0.71 -9.46 16 24 H -0.25 -10.14 6.89 99.48 0.69 -9.46 16 25 C 0.15 4.64 3.51 44.98 0.16 4.80 16 26 H 0.08 2.30 8.14 -2.38 -0.02 2.28 16 27 C -0.19 -5.59 7.62 71.98 0.55 -5.04 16 28 C -0.12 -2.95 5.02 30.67 0.15 -2.79 16 29 H 0.04 0.77 7.85 -2.39 -0.02 0.75 16 30 H 0.05 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 33 H 0.09 2.28 7.85 -2.39 -0.02 2.26 16 34 H 0.07 3.19 6.05 -2.39 -0.01 3.18 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.13 4.72 6.95 -2.91 -0.02 4.70 16 37 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 38 H 0.14 4.07 8.06 -2.91 -0.02 4.05 16 39 H 0.11 4.64 4.83 -2.91 -0.01 4.63 16 40 H 0.30 13.11 8.30 -92.71 -0.77 12.34 16 41 H 0.05 1.77 4.10 -2.39 -0.01 1.76 16 42 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.09 2.78 6.36 -2.39 -0.02 2.76 16 44 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -62.52 349.44 0.37 -62.15 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.94 Total: 34.40 kcal Atomic # 6 Polarization: -72.21 SS G_CDS: 4.25 Total: -67.97 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -1.28 Total: -78.31 kcal Atomic # 8 Polarization: -104.58 SS G_CDS: -4.97 Total: -109.55 kcal Atomic # 14 Polarization: 38.22 SS G_CDS: 1.68 Total: 39.90 kcal Atomic # 16 Polarization: 119.63 SS G_CDS: -0.26 Total: 119.38 kcal Total: -62.52 0.37 -62.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601409720.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.272 kcal (2) G-P(sol) polarization free energy of solvation -62.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds