Wall clock time and date at job start Tue Mar 31 2020 23:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.57191 * 2 1 4 4 C 1.53092 * 109.52493 * 120.16052 * 2 1 3 5 5 O 1.42900 * 109.41998 * 177.51679 * 4 2 1 6 6 C 1.42907 * 114.09671 * 298.84610 * 5 4 2 7 7 C 1.53089 * 109.41798 * 61.15404 * 6 5 4 8 8 C 1.53180 * 109.52524 * 239.84941 * 2 1 3 9 9 H 1.09002 * 109.61216 * 303.02018 * 8 2 1 10 10 C 1.52999 * 109.54731 * 63.24425 * 8 2 1 11 11 N 1.46494 * 109.47206 * 184.56038 * 10 8 2 12 12 S 1.65599 * 120.00074 * 163.32802 * 11 10 8 13 13 O 1.42106 * 106.40130 * 309.00480 * 12 11 10 14 14 O 1.42093 * 106.40309 * 176.08557 * 12 11 10 15 15 C 1.76194 * 107.22032 * 62.54247 * 12 11 10 16 16 C 1.37643 * 120.12765 * 112.56885 * 15 12 11 17 17 C 1.38610 * 120.24981 * 180.02562 * 16 15 12 18 18 C 1.38662 * 120.50244 * 0.04348 * 17 16 15 19 19 C 1.37601 * 120.24623 * 359.67037 * 18 17 16 20 20 C 1.40702 * 120.13334 * 292.59334 * 15 12 11 21 21 C 1.41400 * 120.23912 * 359.97438 * 20 15 12 22 22 H 1.08002 * 119.99915 * 317.50918 * 21 20 15 23 23 C 1.39941 * 119.99664 * 137.50571 * 21 20 15 24 24 N 1.30833 * 119.99512 * 151.33729 * 23 21 20 25 25 Si 1.86791 * 120.00539 * 331.34452 * 23 21 20 26 26 H 1.48511 * 109.47015 * 269.06374 * 25 23 21 27 27 H 1.48496 * 109.47841 * 149.06325 * 25 23 21 28 28 H 1.48496 * 109.47373 * 29.06050 * 25 23 21 29 29 H 1.08998 * 109.46671 * 180.14840 * 1 2 3 30 30 H 1.08997 * 109.47043 * 300.15752 * 1 2 3 31 31 H 1.09003 * 109.46737 * 60.15715 * 1 2 3 32 32 H 1.08997 * 109.47745 * 57.52855 * 4 2 1 33 33 H 1.09007 * 109.48723 * 297.50503 * 4 2 1 34 34 H 1.08998 * 109.47691 * 301.17052 * 6 5 4 35 35 H 1.08994 * 109.48010 * 181.14264 * 6 5 4 36 36 H 1.08994 * 109.52279 * 182.48859 * 7 6 5 37 37 H 1.08996 * 109.52000 * 62.29794 * 7 6 5 38 38 H 1.08999 * 109.46715 * 64.55401 * 10 8 2 39 39 H 1.09003 * 109.46583 * 304.56248 * 10 8 2 40 40 H 0.96998 * 120.00386 * 343.31940 * 11 10 8 41 41 H 1.07999 * 119.87604 * 0.02562 * 16 15 12 42 42 H 1.08005 * 119.74896 * 180.02562 * 17 16 15 43 43 H 1.07998 * 119.87358 * 179.97438 * 18 17 16 44 44 H 1.08001 * 120.12801 * 180.30202 * 19 18 17 45 45 H 0.97004 * 119.99704 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0271 0.0000 4 6 2.0417 -0.7249 1.2476 5 8 3.4695 -0.7743 1.2163 6 6 4.0044 -1.4815 0.0956 7 6 3.5717 -0.7870 -1.1982 8 6 2.0420 -0.7251 -1.2484 9 1 1.6369 -1.7367 -1.2758 10 6 1.6013 0.0368 -2.4998 11 7 1.9973 -0.7142 -3.6936 12 16 1.3100 -0.3629 -5.1587 13 8 -0.0963 -0.3711 -4.9545 14 8 1.9612 -1.1874 -6.1154 15 6 1.7457 1.2978 -5.5544 16 6 2.5879 1.5579 -6.6116 17 6 2.9327 2.8634 -6.9248 18 6 2.4355 3.9211 -6.1785 19 6 1.5874 3.6849 -5.1210 20 6 1.2345 2.3632 -4.7908 21 6 0.3684 2.1081 -3.7025 22 1 -0.4163 1.3722 -3.7979 23 6 0.5282 2.8091 -2.5019 24 7 -0.5048 3.0270 -1.7293 25 14 2.2163 3.4339 -2.0026 26 1 2.9021 2.4042 -1.1811 27 1 2.0682 4.6812 -1.2105 28 1 3.0207 3.7128 -3.2193 29 1 -0.3632 -1.0277 0.0027 30 1 -0.3633 0.5163 0.8885 31 1 -0.3633 0.5114 -0.8914 32 1 1.6432 -1.7392 1.2676 33 1 1.7159 -0.1888 2.1390 34 1 3.6317 -2.5058 0.1006 35 1 5.0926 -1.4903 0.1571 36 1 3.9418 -1.3498 -2.0551 37 1 3.9781 0.2241 -1.2223 38 1 2.0759 1.0180 -2.5137 39 1 0.5180 0.1574 -2.4891 40 1 2.6622 -1.4173 -3.6260 41 1 2.9815 0.7418 -7.1993 42 1 3.5938 3.0583 -7.7563 43 1 2.7112 4.9342 -6.4313 44 1 1.1974 4.5104 -4.5440 45 1 -0.3940 3.5126 -0.8969 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601415324.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:54 Heat of formation + Delta-G solvation = -131.666332 kcal Electronic energy + Delta-G solvation = -29838.647394 eV Core-core repulsion = 25946.488248 eV Total energy + Delta-G solvation = -3892.159146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.71730 -39.57016 -38.14275 -37.24954 -36.68687 -35.53333 -34.59611 -32.68884 -32.37564 -31.73485 -28.27888 -27.55116 -27.03541 -23.85064 -23.44359 -23.16120 -22.84547 -21.00974 -20.17761 -19.54740 -18.70049 -18.00411 -17.48030 -17.09029 -16.86032 -16.69656 -16.19930 -15.90648 -15.70859 -15.41775 -15.21265 -15.06589 -14.87866 -14.62766 -14.36445 -13.98278 -13.83543 -13.49400 -13.17354 -13.01844 -12.97710 -12.96738 -12.92451 -12.83611 -12.68102 -12.64157 -12.37403 -12.13552 -11.96547 -11.77157 -11.72453 -11.33141 -11.17714 -11.15059 -10.93033 -10.35120 -10.16622 -9.90655 -9.39800 -8.94140 -6.58774 -0.18847 0.36836 0.80857 1.25290 1.34371 1.40557 2.10346 2.33750 2.49016 2.91479 2.99610 3.31174 3.63431 3.75817 3.78204 3.88083 3.99436 4.24975 4.31048 4.35673 4.42218 4.50693 4.55095 4.61194 4.63057 4.68180 4.76504 4.79661 4.80846 4.91227 4.96484 4.97505 5.04127 5.17962 5.19113 5.26427 5.29384 5.41697 5.49984 5.53908 5.57847 5.78335 5.88329 6.13299 6.28157 6.32467 6.39710 6.60643 6.76950 8.08087 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.006041 C = 0.005105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.905717 B = 4633.526504 C = 5483.526280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 H 0.058 0.942 4 C 0.071 3.929 5 O -0.403 6.403 6 C 0.061 3.939 7 C -0.156 4.156 8 C -0.095 4.095 9 H 0.092 0.908 10 C 0.130 3.870 11 N -1.105 6.105 12 S 2.722 3.278 13 O -1.001 7.001 14 O -1.007 7.007 15 C -0.778 4.778 16 C -0.009 4.009 17 C -0.241 4.241 18 C -0.057 4.057 19 C -0.222 4.222 20 C 0.148 3.852 21 C -0.512 4.512 22 H 0.101 0.899 23 C 0.097 3.903 24 N -0.787 5.787 25 Si 0.884 3.116 26 H -0.236 1.236 27 H -0.272 1.272 28 H -0.238 1.238 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.068 0.932 35 H 0.108 0.892 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.419 0.581 41 H 0.129 0.871 42 H 0.136 0.864 43 H 0.134 0.866 44 H 0.103 0.897 45 H 0.297 0.703 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.111 -5.020 6.021 11.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.141 4.141 3 H 0.076 0.924 4 C -0.005 4.005 5 O -0.322 6.322 6 C -0.015 4.015 7 C -0.194 4.194 8 C -0.115 4.115 9 H 0.110 0.890 10 C 0.005 3.995 11 N -0.866 5.866 12 S 2.818 3.182 13 O -0.991 6.991 14 O -0.998 6.998 15 C -0.871 4.871 16 C -0.028 4.028 17 C -0.260 4.260 18 C -0.075 4.075 19 C -0.242 4.242 20 C 0.144 3.856 21 C -0.539 4.539 22 H 0.119 0.881 23 C -0.126 4.126 24 N -0.409 5.409 25 Si 0.705 3.295 26 H -0.160 1.160 27 H -0.197 1.197 28 H -0.161 1.161 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.111 0.889 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.097 0.903 40 H 0.256 0.744 41 H 0.147 0.853 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.121 0.879 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.378 -5.324 5.900 10.844 hybrid contribution 0.501 1.063 0.007 1.175 sum 7.880 -4.261 5.907 10.730 Atomic orbital electron populations 1.21838 0.93999 1.02422 1.02640 1.21773 0.96826 0.99932 0.95540 0.92369 1.22694 0.80315 1.00360 0.97158 1.87881 1.21114 1.77061 1.46154 1.22717 0.99818 0.94837 0.84140 1.22336 0.94989 1.02058 1.00005 1.21571 0.96302 1.00259 0.93404 0.89005 1.21883 1.00931 0.93624 0.83082 1.55150 1.58960 1.49151 1.23374 1.00285 0.72859 0.73383 0.71703 1.93469 1.32330 1.87667 1.85613 1.93432 1.77107 1.68254 1.60972 1.30332 1.20476 1.21195 1.15134 1.20734 0.91411 0.97955 0.92719 1.21033 1.08117 0.92220 1.04654 1.21330 0.93286 0.99402 0.93506 1.21519 1.05491 0.96064 1.01129 1.17264 0.87154 0.90944 0.90228 1.19927 1.14545 1.22577 0.96874 0.88110 1.26261 0.99481 0.91180 0.95653 1.69798 1.32092 1.27442 1.11564 0.86696 0.82333 0.79584 0.80907 1.16041 1.19722 1.16094 0.91494 0.91844 0.92890 0.91393 0.88001 0.91383 0.87409 0.88940 0.92612 0.92592 0.90321 0.74419 0.85296 0.84567 0.84824 0.87933 0.89160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.47 8.93 71.98 0.64 -3.83 16 2 C -0.12 -3.47 2.41 -10.70 -0.03 -3.50 16 3 H 0.06 1.93 6.63 -2.38 -0.02 1.91 16 4 C 0.07 1.66 6.13 72.01 0.44 2.10 16 5 O -0.40 -10.27 10.77 -148.98 -1.60 -11.88 16 6 C 0.06 1.27 6.84 72.01 0.49 1.76 16 7 C -0.16 -3.85 5.25 30.69 0.16 -3.69 16 8 C -0.10 -2.73 1.88 -10.67 -0.02 -2.75 16 9 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 10 C 0.13 4.75 3.22 86.38 0.28 5.03 16 11 N -1.11 -38.51 5.88 -187.50 -1.10 -39.61 16 12 S 2.72 115.74 5.44 -56.49 -0.31 115.43 16 13 O -1.00 -49.65 15.15 -128.00 -1.94 -51.59 16 14 O -1.01 -43.29 16.97 -128.00 -2.17 -45.46 16 15 C -0.78 -34.98 5.92 22.73 0.13 -34.85 16 16 C -0.01 -0.35 9.53 22.22 0.21 -0.14 16 17 C -0.24 -8.94 10.05 22.46 0.23 -8.71 16 18 C -0.06 -2.18 10.02 22.22 0.22 -1.96 16 19 C -0.22 -9.87 7.02 22.73 0.16 -9.71 16 20 C 0.15 7.07 4.51 -21.29 -0.10 6.97 16 21 C -0.51 -25.30 5.12 23.46 0.12 -25.18 16 22 H 0.10 5.61 5.38 -2.91 -0.02 5.59 16 23 C 0.10 4.44 4.22 85.25 0.36 4.80 16 24 N -0.79 -36.31 13.53 21.83 0.30 -36.01 16 25 Si 0.88 35.46 23.96 68.60 1.64 37.10 16 26 H -0.24 -8.85 5.83 99.48 0.58 -8.27 16 27 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 28 H -0.24 -9.89 5.74 99.48 0.57 -9.32 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.05 1.95 6.03 -2.39 -0.01 1.94 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.09 1.91 6.97 -2.39 -0.02 1.89 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.06 2.21 3.10 -2.39 -0.01 2.20 16 39 H 0.08 3.32 4.04 -2.39 -0.01 3.31 16 40 H 0.42 11.50 7.43 -96.75 -0.72 10.78 16 41 H 0.13 4.75 7.32 -2.91 -0.02 4.73 16 42 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 43 H 0.13 4.12 8.06 -2.91 -0.02 4.10 16 44 H 0.10 4.46 7.13 -2.91 -0.02 4.44 16 45 H 0.30 12.38 8.30 -92.71 -0.77 11.61 16 Total: -1.00 -61.17 345.02 -1.83 -63.00 By element: Atomic # 1 Polarization: 42.62 SS G_CDS: 0.05 Total: 42.66 kcal Atomic # 6 Polarization: -76.95 SS G_CDS: 3.31 Total: -73.64 kcal Atomic # 7 Polarization: -74.82 SS G_CDS: -0.81 Total: -75.63 kcal Atomic # 8 Polarization: -103.21 SS G_CDS: -5.72 Total: -108.93 kcal Atomic # 14 Polarization: 35.46 SS G_CDS: 1.64 Total: 37.10 kcal Atomic # 16 Polarization: 115.74 SS G_CDS: -0.31 Total: 115.43 kcal Total: -61.17 -1.83 -63.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415324.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.666 kcal (2) G-P(sol) polarization free energy of solvation -61.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds