Wall clock time and date at job start Tue Mar 31 2020 23:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.57308 * 2 1 4 4 C 1.53106 * 109.45305 * 120.20269 * 2 1 3 5 5 O 1.42900 * 109.49128 * 62.38184 * 4 2 1 6 6 C 1.42915 * 114.09271 * 61.11413 * 5 4 2 7 7 C 1.53096 * 109.41176 * 298.84164 * 6 5 4 8 8 C 1.53171 * 109.52353 * 239.83622 * 2 1 3 9 9 H 1.09001 * 109.54561 * 177.12145 * 8 2 1 10 10 C 1.52995 * 109.54495 * 56.94511 * 8 2 1 11 11 N 1.46501 * 109.47347 * 174.87837 * 10 8 2 12 12 S 1.65605 * 119.99789 * 163.88118 * 11 10 8 13 13 O 1.42090 * 106.40281 * 308.33747 * 12 11 10 14 14 O 1.42107 * 106.39869 * 175.41771 * 12 11 10 15 15 C 1.76197 * 107.21793 * 61.88264 * 12 11 10 16 16 C 1.37647 * 120.12388 * 244.29212 * 15 12 11 17 17 C 1.38612 * 120.25019 * 180.02562 * 16 15 12 18 18 C 1.38655 * 120.49769 * 359.97438 * 17 16 15 19 19 C 1.37599 * 120.25081 * 359.97438 * 18 17 16 20 20 C 1.40697 * 120.13219 * 64.31470 * 15 12 11 21 21 C 1.41394 * 120.24171 * 359.95272 * 20 15 12 22 22 H 1.07992 * 120.00180 * 333.98308 * 21 20 15 23 23 C 1.39948 * 119.99532 * 153.97710 * 21 20 15 24 24 N 1.30828 * 120.00186 * 342.56641 * 23 21 20 25 25 Si 1.86804 * 119.99769 * 162.55906 * 23 21 20 26 26 H 1.48499 * 109.47049 * 5.01311 * 25 23 21 27 27 H 1.48501 * 109.47150 * 125.01295 * 25 23 21 28 28 H 1.48499 * 109.46935 * 245.01286 * 25 23 21 29 29 H 1.09002 * 109.46940 * 178.59931 * 1 2 3 30 30 H 1.09000 * 109.47367 * 298.59447 * 1 2 3 31 31 H 1.08995 * 109.47035 * 58.59491 * 1 2 3 32 32 H 1.09005 * 109.48271 * 302.35557 * 4 2 1 33 33 H 1.09000 * 109.42313 * 182.37541 * 4 2 1 34 34 H 1.09000 * 109.47937 * 178.86265 * 6 5 4 35 35 H 1.08997 * 109.48238 * 58.82379 * 6 5 4 36 36 H 1.08994 * 109.52214 * 297.70150 * 7 6 5 37 37 H 1.09000 * 109.51936 * 177.51511 * 7 6 5 38 38 H 1.08995 * 109.47317 * 54.87521 * 10 8 2 39 39 H 1.09003 * 109.47243 * 294.87614 * 10 8 2 40 40 H 0.96999 * 120.00298 * 343.87732 * 11 10 8 41 41 H 1.07997 * 119.87219 * 0.02562 * 16 15 12 42 42 H 1.07992 * 119.75181 * 180.02562 * 17 16 15 43 43 H 1.08000 * 119.87460 * 180.28008 * 18 17 16 44 44 H 1.08004 * 120.12955 * 179.97438 * 19 18 17 45 45 H 0.97003 * 119.99213 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0399 -0.7262 1.2477 5 8 1.6098 -2.0886 1.2155 6 6 2.0989 -2.8285 0.0948 7 6 1.5895 -2.1880 -1.1991 8 6 2.0419 -0.7254 -1.2482 9 1 3.1307 -0.6812 -1.2748 10 6 1.4717 -0.0550 -2.4997 11 7 2.0570 -0.6709 -3.6932 12 16 1.3525 -0.4400 -5.1741 13 8 -0.0200 -0.7745 -5.0220 14 8 2.2040 -1.0645 -6.1251 15 6 1.4089 1.2878 -5.5148 16 6 0.2414 2.0081 -5.6275 17 6 0.2827 3.3674 -5.8960 18 6 1.4975 4.0169 -6.0536 19 6 2.6772 3.3170 -5.9442 20 6 2.6474 1.9363 -5.6733 21 6 3.8531 1.2067 -5.5592 22 1 3.8850 0.3060 -4.9642 23 6 5.0051 1.6517 -6.2176 24 7 4.9078 2.5189 -7.1923 25 14 6.6818 1.0075 -5.7044 26 1 6.5125 -0.0445 -4.6701 27 1 7.3743 0.4331 -6.8859 28 1 7.4915 2.1217 -5.1493 29 1 -0.3633 -1.0274 -0.0251 30 1 -0.3634 0.4918 0.9023 31 1 -0.3633 0.5355 -0.8771 32 1 1.6424 -0.2406 2.1389 33 1 3.1291 -0.6893 1.2689 34 1 1.7438 -3.8572 0.1555 35 1 3.1888 -2.8189 0.1006 36 1 0.5008 -2.2337 -1.2241 37 1 1.9972 -2.7244 -2.0560 38 1 1.7124 1.0079 -2.4842 39 1 0.3893 -0.1822 -2.5189 40 1 2.8571 -1.2138 -3.6161 41 1 -0.7103 1.5124 -5.5062 42 1 -0.6382 3.9248 -5.9823 43 1 1.5181 5.0772 -6.2581 44 1 3.6223 3.8249 -6.0677 45 1 5.7065 2.8275 -7.6482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601415325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:59 Heat of formation + Delta-G solvation = -121.671490 kcal Electronic energy + Delta-G solvation = -28681.659441 eV Core-core repulsion = 24789.933704 eV Total energy + Delta-G solvation = -3891.725737 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.93774 -37.60905 -36.30770 -35.99005 -34.83160 -33.95602 -33.30165 -31.55670 -30.24878 -29.58396 -27.26270 -26.61764 -25.56274 -23.20010 -22.52898 -21.67239 -21.16335 -19.17295 -18.47089 -17.73320 -16.93482 -16.49487 -16.07742 -15.87241 -15.60273 -15.45259 -15.11996 -14.73081 -14.35488 -14.24572 -13.74342 -13.31901 -13.18228 -13.03853 -12.80431 -12.74057 -12.60056 -11.94738 -11.88953 -11.63826 -11.59787 -11.32376 -11.29554 -11.20384 -11.16107 -11.10564 -11.02774 -10.85111 -10.70154 -10.53751 -10.43964 -10.20296 -9.91342 -9.49815 -9.46141 -9.42552 -8.75073 -8.05240 -7.66193 -7.11448 -4.78276 1.54085 2.32376 2.68610 2.92527 2.97773 3.07148 3.71903 3.79084 3.93125 4.34841 4.58457 4.65204 4.70889 4.76304 4.90734 5.06088 5.25543 5.26846 5.36580 5.46388 5.51837 5.55837 5.61107 5.66713 5.69529 5.81533 5.87759 6.01253 6.03834 6.08561 6.13921 6.17140 6.21629 6.36856 6.42173 6.46313 6.74059 6.91953 7.06349 7.10316 7.28072 7.46975 7.52494 7.64570 7.79196 7.86599 8.25798 8.45372 8.62495 9.82868 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.004519 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.122613 B = 6194.903560 C = 7113.359740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 H 0.084 0.916 4 C 0.067 3.933 5 O -0.382 6.382 6 C 0.061 3.939 7 C -0.154 4.154 8 C -0.091 4.091 9 H 0.079 0.921 10 C 0.130 3.870 11 N -1.121 6.121 12 S 2.701 3.299 13 O -0.998 6.998 14 O -0.967 6.967 15 C -0.778 4.778 16 C -0.001 4.001 17 C -0.253 4.253 18 C -0.075 4.075 19 C -0.162 4.162 20 C 0.187 3.813 21 C -0.445 4.445 22 H 0.089 0.911 23 C 0.081 3.919 24 N -0.768 5.768 25 Si 0.913 3.087 26 H -0.255 1.255 27 H -0.269 1.269 28 H -0.268 1.268 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.048 0.952 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.409 0.591 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.121 0.879 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 -3.503 12.874 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.141 4.141 3 H 0.102 0.898 4 C -0.010 4.010 5 O -0.301 6.301 6 C -0.016 4.016 7 C -0.192 4.192 8 C -0.110 4.110 9 H 0.097 0.903 10 C 0.004 3.996 11 N -0.878 5.878 12 S 2.798 3.202 13 O -0.989 6.989 14 O -0.957 6.957 15 C -0.873 4.873 16 C -0.021 4.021 17 C -0.274 4.274 18 C -0.094 4.094 19 C -0.182 4.182 20 C 0.182 3.818 21 C -0.473 4.473 22 H 0.107 0.893 23 C -0.141 4.141 24 N -0.391 5.391 25 Si 0.737 3.263 26 H -0.178 1.178 27 H -0.194 1.194 28 H -0.193 1.193 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.067 0.933 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.095 0.905 40 H 0.243 0.757 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.139 0.861 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.360 -4.059 12.289 13.014 hybrid contribution 1.499 0.651 -0.133 1.640 sum 0.139 -3.408 12.156 12.625 Atomic orbital electron populations 1.21879 0.94270 1.02689 1.01802 1.21761 0.97439 1.00116 0.94792 0.89771 1.22599 0.98234 0.82377 0.97805 1.87907 1.74239 1.22462 1.45507 1.22596 0.97891 0.95462 0.85669 1.22303 1.02779 0.95886 0.98217 1.21403 1.00742 0.94937 0.93965 0.90260 1.21220 0.97896 0.96894 0.83635 1.55657 1.42780 1.65913 1.23483 1.01050 0.72244 0.75034 0.71850 1.93443 1.34825 1.84304 1.86314 1.93544 1.67497 1.76213 1.58449 1.29803 0.99358 1.22758 1.35405 1.20251 0.95340 0.93932 0.92533 1.20468 0.96433 0.94806 1.15645 1.20878 0.93420 0.97745 0.97323 1.21432 0.96990 0.94326 1.05439 1.16974 0.89700 0.91680 0.83465 1.19896 0.93538 1.08435 1.25417 0.89322 1.25976 1.01985 0.93423 0.92703 1.69822 1.32398 1.23166 1.13694 0.86158 0.80144 0.79978 0.80069 1.17798 1.19403 1.19310 0.91746 0.92833 0.91998 0.88993 0.93307 0.89065 0.93326 0.90340 0.90493 0.91542 0.90548 0.75745 0.87479 0.88772 0.88869 0.86111 0.90092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.33 37.16 0.31 -1.26 16 2 C -0.12 -1.25 2.79 -90.48 -0.25 -1.50 16 3 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 4 C 0.07 0.64 6.25 37.21 0.23 0.87 16 5 O -0.38 -4.31 10.22 -35.23 -0.36 -4.67 16 6 C 0.06 0.60 6.84 37.21 0.25 0.86 16 7 C -0.15 -1.71 4.91 -26.59 -0.13 -1.85 16 8 C -0.09 -1.05 2.08 -90.44 -0.19 -1.24 16 9 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 10 C 0.13 1.89 4.98 -4.04 -0.02 1.87 16 11 N -1.12 -18.83 4.63 -10.62 -0.05 -18.88 16 12 S 2.70 58.20 4.94 -107.50 -0.53 57.67 16 13 O -1.00 -22.46 16.54 -57.17 -0.95 -23.40 16 14 O -0.97 -23.86 16.58 -57.17 -0.95 -24.81 16 15 C -0.78 -18.36 5.87 -38.87 -0.23 -18.59 16 16 C 0.00 -0.02 9.53 -39.66 -0.38 -0.39 16 17 C -0.25 -5.49 10.05 -39.29 -0.39 -5.89 16 18 C -0.07 -1.66 10.02 -39.66 -0.40 -2.06 16 19 C -0.16 -3.95 8.69 -38.87 -0.34 -4.29 16 20 C 0.19 4.67 5.55 -106.83 -0.59 4.08 16 21 C -0.45 -10.92 7.72 -37.74 -0.29 -11.21 16 22 H 0.09 2.03 5.69 -52.49 -0.30 1.73 16 23 C 0.08 1.92 5.13 -17.34 -0.09 1.83 16 24 N -0.77 -18.62 11.04 55.55 0.61 -18.01 16 25 Si 0.91 17.48 29.59 -169.99 -5.03 12.45 16 26 H -0.25 -4.73 7.11 56.52 0.40 -4.33 16 27 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 28 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 29 H 0.06 0.72 6.11 -51.93 -0.32 0.40 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.69 6.60 -51.93 -0.34 0.34 16 32 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.08 0.92 6.60 -51.93 -0.34 0.58 16 37 H 0.08 0.85 7.71 -51.93 -0.40 0.45 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.08 1.13 6.39 -51.93 -0.33 0.80 16 40 H 0.41 6.10 8.30 -34.47 -0.29 5.82 16 41 H 0.11 2.24 7.33 -52.49 -0.38 1.85 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 44 H 0.12 2.96 6.27 -52.48 -0.33 2.63 16 45 H 0.29 6.23 8.30 -40.82 -0.34 5.89 16 LS Contribution 364.16 15.07 5.49 5.49 Total: -1.00 -30.40 364.16 -10.66 -41.07 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -6.40 Total: 11.89 kcal Atomic # 6 Polarization: -36.28 SS G_CDS: -2.51 Total: -38.78 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: 0.56 Total: -36.89 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -2.25 Total: -52.89 kcal Atomic # 14 Polarization: 17.48 SS G_CDS: -5.03 Total: 12.45 kcal Atomic # 16 Polarization: 58.20 SS G_CDS: -0.53 Total: 57.67 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.40 -10.66 -41.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.604 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds