Wall clock time and date at job start Tue Mar 31 2020 23:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.57308 * 2 1 4 4 C 1.53106 * 109.45305 * 120.20269 * 2 1 3 5 5 O 1.42900 * 109.49128 * 62.38184 * 4 2 1 6 6 C 1.42915 * 114.09271 * 61.11413 * 5 4 2 7 7 C 1.53096 * 109.41176 * 298.84164 * 6 5 4 8 8 C 1.53171 * 109.52353 * 239.83622 * 2 1 3 9 9 H 1.09001 * 109.54561 * 177.12145 * 8 2 1 10 10 C 1.52995 * 109.54495 * 56.94511 * 8 2 1 11 11 N 1.46501 * 109.47347 * 174.87837 * 10 8 2 12 12 S 1.65605 * 119.99789 * 163.88118 * 11 10 8 13 13 O 1.42090 * 106.40281 * 308.33747 * 12 11 10 14 14 O 1.42107 * 106.39869 * 175.41771 * 12 11 10 15 15 C 1.76197 * 107.21793 * 61.88264 * 12 11 10 16 16 C 1.37647 * 120.12388 * 244.29212 * 15 12 11 17 17 C 1.38612 * 120.25019 * 180.02562 * 16 15 12 18 18 C 1.38655 * 120.49769 * 359.97438 * 17 16 15 19 19 C 1.37599 * 120.25081 * 359.97438 * 18 17 16 20 20 C 1.40697 * 120.13219 * 64.31470 * 15 12 11 21 21 C 1.41394 * 120.24171 * 359.95272 * 20 15 12 22 22 H 1.07992 * 120.00180 * 333.98308 * 21 20 15 23 23 C 1.39948 * 119.99532 * 153.97710 * 21 20 15 24 24 N 1.30828 * 120.00186 * 342.56641 * 23 21 20 25 25 Si 1.86804 * 119.99769 * 162.55906 * 23 21 20 26 26 H 1.48499 * 109.47049 * 5.01311 * 25 23 21 27 27 H 1.48501 * 109.47150 * 125.01295 * 25 23 21 28 28 H 1.48499 * 109.46935 * 245.01286 * 25 23 21 29 29 H 1.09002 * 109.46940 * 178.59931 * 1 2 3 30 30 H 1.09000 * 109.47367 * 298.59447 * 1 2 3 31 31 H 1.08995 * 109.47035 * 58.59491 * 1 2 3 32 32 H 1.09005 * 109.48271 * 302.35557 * 4 2 1 33 33 H 1.09000 * 109.42313 * 182.37541 * 4 2 1 34 34 H 1.09000 * 109.47937 * 178.86265 * 6 5 4 35 35 H 1.08997 * 109.48238 * 58.82379 * 6 5 4 36 36 H 1.08994 * 109.52214 * 297.70150 * 7 6 5 37 37 H 1.09000 * 109.51936 * 177.51511 * 7 6 5 38 38 H 1.08995 * 109.47317 * 54.87521 * 10 8 2 39 39 H 1.09003 * 109.47243 * 294.87614 * 10 8 2 40 40 H 0.96999 * 120.00298 * 343.87732 * 11 10 8 41 41 H 1.07997 * 119.87219 * 0.02562 * 16 15 12 42 42 H 1.07992 * 119.75181 * 180.02562 * 17 16 15 43 43 H 1.08000 * 119.87460 * 180.28008 * 18 17 16 44 44 H 1.08004 * 120.12955 * 179.97438 * 19 18 17 45 45 H 0.97003 * 119.99213 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0399 -0.7262 1.2477 5 8 1.6098 -2.0886 1.2155 6 6 2.0989 -2.8285 0.0948 7 6 1.5895 -2.1880 -1.1991 8 6 2.0419 -0.7254 -1.2482 9 1 3.1307 -0.6812 -1.2748 10 6 1.4717 -0.0550 -2.4997 11 7 2.0570 -0.6709 -3.6932 12 16 1.3525 -0.4400 -5.1741 13 8 -0.0200 -0.7745 -5.0220 14 8 2.2040 -1.0645 -6.1251 15 6 1.4089 1.2878 -5.5148 16 6 0.2414 2.0081 -5.6275 17 6 0.2827 3.3674 -5.8960 18 6 1.4975 4.0169 -6.0536 19 6 2.6772 3.3170 -5.9442 20 6 2.6474 1.9363 -5.6733 21 6 3.8531 1.2067 -5.5592 22 1 3.8850 0.3060 -4.9642 23 6 5.0051 1.6517 -6.2176 24 7 4.9078 2.5189 -7.1923 25 14 6.6818 1.0075 -5.7044 26 1 6.5125 -0.0445 -4.6701 27 1 7.3743 0.4331 -6.8859 28 1 7.4915 2.1217 -5.1493 29 1 -0.3633 -1.0274 -0.0251 30 1 -0.3634 0.4918 0.9023 31 1 -0.3633 0.5355 -0.8771 32 1 1.6424 -0.2406 2.1389 33 1 3.1291 -0.6893 1.2689 34 1 1.7438 -3.8572 0.1555 35 1 3.1888 -2.8189 0.1006 36 1 0.5008 -2.2337 -1.2241 37 1 1.9972 -2.7244 -2.0560 38 1 1.7124 1.0079 -2.4842 39 1 0.3893 -0.1822 -2.5189 40 1 2.8571 -1.2138 -3.6161 41 1 -0.7103 1.5124 -5.5062 42 1 -0.6382 3.9248 -5.9823 43 1 1.5181 5.0772 -6.2581 44 1 3.6223 3.8249 -6.0677 45 1 5.7065 2.8275 -7.6482 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601415325.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:48:58 Heat of formation + Delta-G solvation = -141.256382 kcal Electronic energy + Delta-G solvation = -28682.508706 eV Core-core repulsion = 24789.933704 eV Total energy + Delta-G solvation = -3892.575002 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.79393 -39.37654 -38.04162 -37.13431 -36.66238 -35.70137 -34.39163 -32.46382 -32.01074 -31.36562 -28.25943 -27.54424 -27.31964 -24.04355 -23.54753 -23.43565 -22.93213 -20.45326 -19.73446 -19.49697 -18.47772 -17.95193 -17.31012 -17.09014 -16.89278 -16.76637 -16.17410 -16.00241 -15.84581 -15.49311 -15.10898 -14.97764 -14.73141 -14.48085 -14.07542 -13.69253 -13.62456 -13.60507 -13.32422 -13.01527 -12.95156 -12.91009 -12.85207 -12.80048 -12.62533 -12.47088 -12.39816 -12.12010 -12.08501 -11.78440 -11.64504 -11.35057 -11.17552 -11.11903 -11.01818 -10.34798 -10.18746 -9.83943 -9.47201 -8.84727 -6.60783 -0.15177 0.53783 0.96311 1.36165 1.49408 1.52037 2.14348 2.35940 2.60481 2.98741 3.04860 3.47229 3.66225 3.74205 3.83863 3.93914 4.07856 4.28731 4.32836 4.40745 4.43920 4.47608 4.50724 4.65898 4.71408 4.76731 4.81646 4.84027 4.88165 4.88936 4.96578 5.05981 5.11070 5.14072 5.27012 5.29428 5.30451 5.34691 5.51435 5.55882 5.70897 5.80554 6.00540 6.07776 6.24040 6.34373 6.46876 6.65625 6.83309 8.13021 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011192 B = 0.004519 C = 0.003935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2501.122613 B = 6194.903560 C = 7113.359740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.119 4.119 3 H 0.091 0.909 4 C 0.066 3.934 5 O -0.397 6.397 6 C 0.062 3.938 7 C -0.155 4.155 8 C -0.086 4.086 9 H 0.087 0.913 10 C 0.127 3.873 11 N -1.108 6.108 12 S 2.720 3.280 13 O -1.010 7.010 14 O -1.002 7.002 15 C -0.795 4.795 16 C -0.015 4.015 17 C -0.254 4.254 18 C -0.074 4.074 19 C -0.189 4.189 20 C 0.162 3.838 21 C -0.473 4.473 22 H 0.096 0.904 23 C 0.040 3.960 24 N -0.802 5.802 25 Si 0.976 3.024 26 H -0.245 1.245 27 H -0.269 1.269 28 H -0.255 1.255 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.050 0.950 32 H 0.107 0.893 33 H 0.059 0.941 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.072 0.928 40 H 0.420 0.580 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.111 0.889 45 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.299 -3.595 14.554 14.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.139 4.139 3 H 0.110 0.890 4 C -0.010 4.010 5 O -0.316 6.316 6 C -0.015 4.015 7 C -0.193 4.193 8 C -0.106 4.106 9 H 0.106 0.894 10 C 0.001 3.999 11 N -0.868 5.868 12 S 2.816 3.184 13 O -1.001 7.001 14 O -0.992 6.992 15 C -0.889 4.889 16 C -0.034 4.034 17 C -0.274 4.274 18 C -0.093 4.093 19 C -0.209 4.209 20 C 0.158 3.842 21 C -0.500 4.500 22 H 0.114 0.886 23 C -0.179 4.179 24 N -0.425 5.425 25 Si 0.795 3.205 26 H -0.168 1.168 27 H -0.194 1.194 28 H -0.179 1.179 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.125 0.875 33 H 0.077 0.923 34 H 0.120 0.880 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.090 0.910 40 H 0.255 0.745 41 H 0.138 0.862 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.129 0.871 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.821 -4.132 13.965 14.587 hybrid contribution 1.202 0.721 -0.656 1.548 sum 0.381 -3.411 13.309 13.745 Atomic orbital electron populations 1.21869 0.94620 1.02156 1.01971 1.21771 0.97132 1.00500 0.94483 0.89029 1.22706 0.98926 0.81652 0.97762 1.87894 1.74653 1.23228 1.45832 1.22651 0.98508 0.95758 0.84570 1.22308 1.02229 0.95640 0.99121 1.21389 1.01066 0.95180 0.92947 0.89449 1.21402 0.97795 0.96855 0.83876 1.55244 1.43125 1.65880 1.22591 1.00318 0.71762 0.74016 0.72265 1.93420 1.35649 1.84211 1.86770 1.93488 1.68264 1.76720 1.60730 1.30097 0.99432 1.23845 1.35565 1.20565 0.95628 0.94689 0.92539 1.20857 0.97539 0.94752 1.14270 1.21222 0.92928 0.99184 0.95971 1.21502 0.97510 0.94572 1.07316 1.17289 0.90522 0.92297 0.84107 1.20198 0.94285 1.09184 1.26380 0.88630 1.26864 1.05334 0.93479 0.92271 1.69855 1.33828 1.24266 1.14559 0.85243 0.75504 0.79950 0.79833 1.16770 1.19391 1.17871 0.92545 0.91527 0.93051 0.87546 0.92278 0.87985 0.92223 0.91315 0.90555 0.92057 0.90952 0.74468 0.86185 0.85635 0.86057 0.87078 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.33 71.98 0.60 -2.36 16 2 C -0.12 -2.24 2.79 -10.70 -0.03 -2.27 16 3 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 4 C 0.07 1.11 6.25 72.02 0.45 1.56 16 5 O -0.40 -8.10 10.22 -148.98 -1.52 -9.62 16 6 C 0.06 1.11 6.84 72.01 0.49 1.60 16 7 C -0.16 -3.25 4.91 30.69 0.15 -3.10 16 8 C -0.09 -1.87 2.08 -10.68 -0.02 -1.89 16 9 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 10 C 0.13 3.60 4.98 86.38 0.43 4.03 16 11 N -1.11 -36.85 4.63 -187.50 -0.87 -37.72 16 12 S 2.72 118.05 4.94 -56.49 -0.28 117.77 16 13 O -1.01 -45.47 16.54 -128.00 -2.12 -47.59 16 14 O -1.00 -50.19 16.58 -128.00 -2.12 -52.31 16 15 C -0.80 -37.88 5.87 22.73 0.13 -37.75 16 16 C -0.01 -0.65 9.53 22.22 0.21 -0.44 16 17 C -0.25 -10.69 10.05 22.46 0.23 -10.46 16 18 C -0.07 -3.25 10.02 22.22 0.22 -3.03 16 19 C -0.19 -9.34 8.69 22.73 0.20 -9.15 16 20 C 0.16 8.26 5.55 -21.29 -0.12 8.14 16 21 C -0.47 -23.50 7.72 23.46 0.18 -23.31 16 22 H 0.10 4.41 5.69 -2.91 -0.02 4.39 16 23 C 0.04 1.87 5.13 85.26 0.44 2.31 16 24 N -0.80 -39.47 11.04 21.83 0.24 -39.22 16 25 Si 0.98 35.25 29.59 68.60 2.03 37.28 16 26 H -0.24 -8.35 7.11 99.48 0.71 -7.64 16 27 H -0.27 -9.64 7.11 99.48 0.71 -8.93 16 28 H -0.25 -8.56 7.11 99.48 0.71 -7.86 16 29 H 0.06 1.21 6.11 -2.39 -0.01 1.19 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.11 6.60 -2.39 -0.02 1.09 16 32 H 0.11 1.47 8.14 -2.38 -0.02 1.45 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.07 1.57 6.60 -2.39 -0.02 1.55 16 37 H 0.08 1.58 7.71 -2.39 -0.02 1.57 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 2.13 6.39 -2.39 -0.02 2.11 16 40 H 0.42 12.24 8.30 -96.74 -0.80 11.44 16 41 H 0.12 4.94 7.33 -2.91 -0.02 4.92 16 42 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 43 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 44 H 0.11 5.59 6.27 -2.91 -0.02 5.58 16 45 H 0.30 12.97 8.30 -92.71 -0.77 12.21 16 Total: -1.00 -65.15 364.16 -0.86 -66.01 By element: Atomic # 1 Polarization: 41.31 SS G_CDS: 0.21 Total: 41.52 kcal Atomic # 6 Polarization: -79.69 SS G_CDS: 3.56 Total: -76.13 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -0.63 Total: -76.94 kcal Atomic # 8 Polarization: -103.76 SS G_CDS: -5.76 Total: -109.52 kcal Atomic # 14 Polarization: 35.25 SS G_CDS: 2.03 Total: 37.28 kcal Atomic # 16 Polarization: 118.05 SS G_CDS: -0.28 Total: 117.77 kcal Total: -65.15 -0.86 -66.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415325.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.242 kcal (2) G-P(sol) polarization free energy of solvation -65.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds