Wall clock time and date at job start Tue Mar 31 2020 23:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.57128 * 2 1 4 4 C 1.53096 * 109.52026 * 239.84598 * 2 1 3 5 5 O 1.42901 * 109.41188 * 182.48848 * 4 2 1 6 6 C 1.42896 * 114.10339 * 61.15458 * 5 4 2 7 7 C 1.53087 * 109.41781 * 298.84686 * 6 5 4 8 8 C 1.53175 * 109.52249 * 120.16048 * 2 1 3 9 9 H 1.09008 * 109.54294 * 56.92758 * 8 2 1 10 10 C 1.52998 * 109.54387 * 296.75464 * 8 2 1 11 11 N 1.46500 * 109.46959 * 175.00009 * 10 8 2 12 12 S 1.65612 * 119.99565 * 162.95810 * 11 10 8 13 13 O 1.42094 * 106.40059 * 311.83762 * 12 11 10 14 14 O 1.42105 * 106.39732 * 178.92172 * 12 11 10 15 15 C 1.76200 * 107.22080 * 65.38048 * 12 11 10 16 16 C 1.37629 * 120.12727 * 245.29349 * 15 12 11 17 17 C 1.38616 * 120.25086 * 179.97438 * 16 15 12 18 18 C 1.38664 * 120.49868 * 0.02562 * 17 16 15 19 19 C 1.37603 * 120.24568 * 359.97438 * 18 17 16 20 20 C 1.40698 * 120.12262 * 65.26627 * 15 12 11 21 21 C 1.41392 * 120.24981 * 0.02562 * 20 15 12 22 22 H 1.07996 * 119.99965 * 329.09915 * 21 20 15 23 23 C 1.39948 * 119.99920 * 149.10015 * 21 20 15 24 24 N 1.30816 * 120.00258 * 346.01863 * 23 21 20 25 25 Si 1.86804 * 119.99558 * 166.02071 * 23 21 20 26 26 H 1.48496 * 109.47582 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.46755 * 120.00053 * 25 23 21 28 28 H 1.48505 * 109.46965 * 239.99628 * 25 23 21 29 29 H 1.09001 * 109.46953 * 299.84135 * 1 2 3 30 30 H 1.08997 * 109.47473 * 59.84352 * 1 2 3 31 31 H 1.09008 * 109.47083 * 179.84105 * 1 2 3 32 32 H 1.08998 * 109.47778 * 302.46871 * 4 2 1 33 33 H 1.08994 * 109.48033 * 62.48984 * 4 2 1 34 34 H 1.09008 * 109.47674 * 58.82268 * 6 5 4 35 35 H 1.08998 * 109.48706 * 178.84782 * 6 5 4 36 36 H 1.09005 * 109.52233 * 297.69872 * 7 6 5 37 37 H 1.08998 * 109.52662 * 177.51361 * 7 6 5 38 38 H 1.08999 * 109.47518 * 54.99742 * 10 8 2 39 39 H 1.09002 * 109.47315 * 294.99932 * 10 8 2 40 40 H 0.96995 * 120.00531 * 342.95215 * 11 10 8 41 41 H 1.07999 * 119.87841 * 359.97438 * 16 15 12 42 42 H 1.07993 * 119.75543 * 179.97438 * 17 16 15 43 43 H 1.07995 * 119.87326 * 179.70113 * 18 17 16 44 44 H 1.07999 * 120.12234 * 179.97438 * 19 18 17 45 45 H 0.97001 * 120.00408 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0416 -0.7248 -1.2477 5 8 3.4694 -0.7743 -1.2163 6 6 4.0043 -1.4816 -0.0958 7 6 3.5716 -0.7873 1.1981 8 6 2.0419 -0.7253 1.2482 9 1 1.6354 -1.7364 1.2749 10 6 1.6012 0.0365 2.4997 11 7 1.9879 -0.7199 3.6933 12 16 2.0286 0.0281 5.1703 13 8 2.7458 1.2408 4.9862 14 8 2.4100 -0.9651 6.1125 15 6 0.3742 0.4840 5.5700 16 6 0.0285 1.8125 5.6690 17 6 -1.2723 2.1740 5.9827 18 6 -2.2392 1.2043 6.2008 19 6 -1.9161 -0.1300 6.1071 20 6 -0.5986 -0.5087 5.7886 21 6 -0.2550 -1.8767 5.6896 22 1 0.5212 -2.1905 5.0074 23 6 -0.9208 -2.8240 6.4756 24 7 -1.6557 -2.4357 7.4858 25 14 -0.7601 -4.6431 6.0822 26 1 0.1216 -4.8180 4.9002 27 1 -0.1716 -5.3513 7.2473 28 1 -2.1022 -5.2061 5.7870 29 1 -0.3633 0.5114 0.8914 30 1 -0.3634 0.5162 -0.8885 31 1 -0.3634 -1.0277 -0.0029 32 1 1.6431 -1.7392 -1.2678 33 1 1.7157 -0.1886 -2.1389 34 1 3.6315 -2.5059 -0.1009 35 1 5.0926 -1.4906 -0.1573 36 1 3.9780 0.2239 1.2224 37 1 3.9417 -1.3502 2.0549 38 1 0.5188 0.1640 2.4852 39 1 2.0820 1.0146 2.5179 40 1 2.2199 -1.6587 3.6185 41 1 0.7736 2.5762 5.5016 42 1 -1.5347 3.2189 6.0587 43 1 -3.2485 1.4973 6.4494 44 1 -2.6706 -0.8836 6.2778 45 1 -2.1175 -3.0922 8.0304 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601415326.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:02 Heat of formation + Delta-G solvation = -143.984619 kcal Electronic energy + Delta-G solvation = -28611.868203 eV Core-core repulsion = 24719.174896 eV Total energy + Delta-G solvation = -3892.693307 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.64981 -39.38075 -38.04855 -37.18219 -36.66072 -35.65809 -34.57169 -32.69042 -32.00507 -31.38539 -28.21408 -27.45934 -27.29768 -23.68540 -23.45486 -23.11601 -22.93502 -21.09382 -20.12355 -19.49133 -18.45829 -17.94928 -17.37777 -17.08708 -16.88637 -16.61122 -16.14981 -15.96346 -15.80346 -15.34033 -15.10168 -14.94393 -14.72013 -14.46454 -14.38646 -13.73039 -13.66809 -13.32234 -13.18391 -12.99744 -12.94854 -12.89502 -12.84761 -12.82917 -12.80833 -12.64978 -12.45652 -12.12153 -12.00455 -11.80355 -11.63086 -11.42021 -11.18990 -11.13867 -11.10401 -10.45973 -10.11102 -9.83942 -9.42861 -8.80849 -6.60320 -0.15847 0.52683 0.96089 1.36565 1.48836 1.51809 2.15579 2.35830 2.63448 2.99479 3.02013 3.45683 3.64252 3.75339 3.76738 3.91846 4.00061 4.32130 4.33755 4.42024 4.42999 4.48577 4.53424 4.57156 4.68675 4.70567 4.77577 4.83135 4.84618 4.90917 4.97699 5.04254 5.12505 5.14209 5.21704 5.25459 5.30015 5.38700 5.51918 5.52449 5.70235 5.80214 5.98946 6.08204 6.23705 6.30937 6.46624 6.68494 6.82610 8.18017 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010984 B = 0.004474 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2548.606781 B = 6257.053427 C = 6977.750918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 H 0.077 0.923 4 C 0.067 3.933 5 O -0.402 6.402 6 C 0.061 3.939 7 C -0.155 4.155 8 C -0.086 4.086 9 H 0.087 0.913 10 C 0.124 3.876 11 N -1.107 6.107 12 S 2.720 3.280 13 O -1.010 7.010 14 O -0.999 6.999 15 C -0.791 4.791 16 C -0.017 4.017 17 C -0.249 4.249 18 C -0.075 4.075 19 C -0.184 4.184 20 C 0.166 3.834 21 C -0.478 4.478 22 H 0.095 0.905 23 C 0.040 3.960 24 N -0.810 5.810 25 Si 0.974 3.026 26 H -0.244 1.244 27 H -0.271 1.271 28 H -0.256 1.256 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.420 0.580 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.108 0.892 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.610 -0.964 -14.755 15.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.136 4.136 3 H 0.095 0.905 4 C -0.010 4.010 5 O -0.321 6.321 6 C -0.015 4.015 7 C -0.192 4.192 8 C -0.106 4.106 9 H 0.105 0.895 10 C -0.002 4.002 11 N -0.868 5.868 12 S 2.816 3.184 13 O -1.000 7.000 14 O -0.990 6.990 15 C -0.884 4.884 16 C -0.037 4.037 17 C -0.269 4.269 18 C -0.093 4.093 19 C -0.204 4.204 20 C 0.162 3.838 21 C -0.506 4.506 22 H 0.113 0.887 23 C -0.178 4.178 24 N -0.434 5.434 25 Si 0.794 3.206 26 H -0.167 1.167 27 H -0.196 1.196 28 H -0.180 1.180 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.079 0.921 35 H 0.121 0.879 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.256 0.744 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.140 0.860 44 H 0.126 0.874 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.323 -0.620 -14.184 14.581 hybrid contribution -1.000 -0.937 0.745 1.559 sum 2.323 -1.556 -13.440 13.727 Atomic orbital electron populations 1.21836 0.93649 1.02661 1.02605 1.21742 0.96935 1.00469 0.94460 0.90472 1.22746 0.80170 1.00279 0.97798 1.87893 1.21374 1.76814 1.46002 1.22668 0.99693 0.94695 0.84482 1.22290 0.95391 1.02369 0.99182 1.21431 0.95923 1.00248 0.93003 0.89466 1.21422 1.00047 0.94854 0.83833 1.55252 1.85778 1.23099 1.22667 1.00335 0.73845 0.71935 0.72262 1.93420 1.72031 1.48034 1.86537 1.93492 1.83557 1.60717 1.61184 1.30210 1.22431 1.01117 1.34676 1.20585 0.96665 0.93610 0.92805 1.20890 0.93758 0.98927 1.13344 1.21239 0.98931 0.93214 0.95934 1.21451 0.96671 0.95328 1.06917 1.17294 0.90582 0.91966 0.83980 1.20130 1.18083 0.91660 1.20734 0.88671 1.26795 0.91925 1.06542 0.92549 1.69831 1.22402 1.39312 1.11862 0.85260 0.79927 0.75285 0.80141 1.16702 1.19571 1.18036 0.92769 0.90927 0.92027 0.92257 0.87500 0.92135 0.87857 0.91596 0.90356 0.91535 0.91177 0.74437 0.86089 0.85494 0.85956 0.87436 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 8.93 71.98 0.64 -2.04 16 2 C -0.12 -2.20 2.42 -10.70 -0.03 -2.23 16 3 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 4 C 0.07 1.13 6.13 72.01 0.44 1.57 16 5 O -0.40 -8.44 10.76 -148.98 -1.60 -10.04 16 6 C 0.06 1.11 6.84 72.01 0.49 1.60 16 7 C -0.15 -3.26 5.27 30.68 0.16 -3.09 16 8 C -0.09 -1.88 1.80 -10.68 -0.02 -1.90 16 9 H 0.09 1.80 8.14 -2.38 -0.02 1.78 16 10 C 0.12 3.51 5.48 86.38 0.47 3.98 16 11 N -1.11 -36.67 4.70 -187.49 -0.88 -37.55 16 12 S 2.72 117.61 4.97 -56.49 -0.28 117.33 16 13 O -1.01 -45.29 16.40 -128.00 -2.10 -47.39 16 14 O -1.00 -49.96 16.59 -128.00 -2.12 -52.08 16 15 C -0.79 -37.46 5.94 22.73 0.14 -37.33 16 16 C -0.02 -0.75 9.53 22.22 0.21 -0.54 16 17 C -0.25 -10.36 10.05 22.46 0.23 -10.14 16 18 C -0.07 -3.23 10.02 22.22 0.22 -3.00 16 19 C -0.18 -9.04 8.65 22.73 0.20 -8.84 16 20 C 0.17 8.43 5.51 -21.29 -0.12 8.31 16 21 C -0.48 -23.77 7.55 23.46 0.18 -23.59 16 22 H 0.10 4.37 5.88 -2.91 -0.02 4.35 16 23 C 0.04 1.90 5.17 85.26 0.44 2.34 16 24 N -0.81 -40.40 11.17 21.83 0.24 -40.15 16 25 Si 0.97 35.86 29.58 68.60 2.03 37.89 16 26 H -0.24 -8.43 7.11 99.48 0.71 -7.72 16 27 H -0.27 -9.97 7.11 99.48 0.71 -9.27 16 28 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 29 H 0.05 1.13 6.42 -2.39 -0.02 1.11 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.05 8.14 -2.38 -0.02 1.04 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 35 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 37 H 0.08 1.63 7.73 -2.39 -0.02 1.61 16 38 H 0.07 1.93 6.30 -2.39 -0.02 1.91 16 39 H 0.07 2.05 7.70 -2.39 -0.02 2.03 16 40 H 0.42 12.27 8.25 -96.75 -0.80 11.47 16 41 H 0.12 4.93 7.32 -2.91 -0.02 4.91 16 42 H 0.13 4.39 8.06 -2.91 -0.02 4.37 16 43 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 44 H 0.11 5.41 6.51 -2.91 -0.02 5.39 16 45 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 Total: -1.00 -65.33 368.60 -0.85 -66.18 By element: Atomic # 1 Polarization: 40.50 SS G_CDS: 0.21 Total: 40.71 kcal Atomic # 6 Polarization: -78.55 SS G_CDS: 3.66 Total: -74.89 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -0.64 Total: -77.70 kcal Atomic # 8 Polarization: -103.69 SS G_CDS: -5.83 Total: -109.51 kcal Atomic # 14 Polarization: 35.86 SS G_CDS: 2.03 Total: 37.89 kcal Atomic # 16 Polarization: 117.61 SS G_CDS: -0.28 Total: 117.33 kcal Total: -65.33 -0.85 -66.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415326.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.806 kcal (2) G-P(sol) polarization free energy of solvation -65.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds