Wall clock time and date at job start Tue Mar 31 2020 23:49:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.56857 * 2 1 4 4 C 1.53102 * 109.45307 * 239.79335 * 2 1 3 5 5 O 1.42904 * 109.48292 * 297.61251 * 4 2 1 6 6 C 1.42899 * 114.09901 * 298.88574 * 5 4 2 7 7 C 1.53095 * 109.41030 * 61.16411 * 6 5 4 8 8 C 1.53166 * 109.52058 * 120.15491 * 2 1 3 9 9 H 1.09009 * 109.54724 * 182.88489 * 8 2 1 10 10 C 1.53005 * 109.54442 * 303.05763 * 8 2 1 11 11 N 1.46508 * 109.47077 * 184.82573 * 10 8 2 12 12 S 1.65602 * 119.99936 * 165.87190 * 11 10 8 13 13 O 1.42099 * 106.40074 * 309.20252 * 12 11 10 14 14 O 1.42103 * 106.39978 * 176.28078 * 12 11 10 15 15 C 1.76202 * 107.21604 * 62.74314 * 12 11 10 16 16 C 1.37643 * 120.12494 * 245.83744 * 15 12 11 17 17 C 1.38607 * 120.24950 * 180.02562 * 16 15 12 18 18 C 1.38661 * 120.49957 * 359.97438 * 17 16 15 19 19 C 1.37601 * 120.24894 * 0.02562 * 18 17 16 20 20 C 1.40696 * 120.13160 * 65.86089 * 15 12 11 21 21 C 1.41396 * 120.24192 * 359.97438 * 20 15 12 22 22 H 1.08005 * 120.00304 * 331.63463 * 21 20 15 23 23 C 1.39940 * 119.99807 * 151.63017 * 21 20 15 24 24 N 1.30826 * 120.00184 * 348.34544 * 23 21 20 25 25 Si 1.86801 * 119.99951 * 168.34576 * 23 21 20 26 26 H 1.48498 * 109.47267 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47402 * 119.99857 * 25 23 21 28 28 H 1.48506 * 109.47189 * 239.99926 * 25 23 21 29 29 H 1.08996 * 109.47147 * 299.84544 * 1 2 3 30 30 H 1.09002 * 109.46951 * 59.84764 * 1 2 3 31 31 H 1.09004 * 109.46964 * 179.84377 * 1 2 3 32 32 H 1.08998 * 109.40369 * 177.63185 * 4 2 1 33 33 H 1.08997 * 109.49268 * 57.64527 * 4 2 1 34 34 H 1.08993 * 109.48319 * 301.17840 * 6 5 4 35 35 H 1.08998 * 109.48067 * 181.14149 * 6 5 4 36 36 H 1.09002 * 109.52025 * 182.48117 * 7 6 5 37 37 H 1.08998 * 109.52754 * 62.29621 * 7 6 5 38 38 H 1.08993 * 109.46981 * 64.82982 * 10 8 2 39 39 H 1.08995 * 109.46889 * 304.82165 * 10 8 2 40 40 H 0.97003 * 120.00220 * 345.87023 * 11 10 8 41 41 H 1.08001 * 119.87355 * 0.03946 * 16 15 12 42 42 H 1.07997 * 119.75249 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.87402 * 180.28293 * 18 17 16 44 44 H 1.07998 * 120.12510 * 180.02562 * 19 18 17 45 45 H 0.97002 * 119.99855 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0399 -0.7263 -1.2476 5 8 1.6099 -2.0887 -1.2151 6 6 2.0989 -2.8284 -0.0945 7 6 1.5895 -2.1878 1.1994 8 6 2.0418 -0.7252 1.2483 9 1 3.1307 -0.6810 1.2750 10 6 1.4715 -0.0546 2.4997 11 7 2.0515 -0.6751 3.6935 12 16 1.8960 0.0620 5.1683 13 8 2.3202 1.4066 4.9915 14 8 2.4783 -0.8181 6.1200 15 6 0.1748 0.1279 5.5395 16 6 -0.4692 1.3419 5.6171 17 6 -1.8229 1.3969 5.9094 18 6 -2.5439 0.2324 6.1263 19 6 -1.9208 -0.9923 6.0537 20 6 -0.5466 -1.0601 5.7581 21 6 0.1043 -2.3129 5.6809 22 1 0.9677 -2.4346 5.0436 23 6 -0.3702 -3.3953 6.4304 24 7 -1.2624 -3.2011 7.3673 25 14 0.2704 -5.1173 6.0932 26 1 1.2660 -5.0683 4.9924 27 1 0.9143 -5.6548 7.3187 28 1 -0.8593 -5.9977 5.7008 29 1 -0.3633 0.5114 0.8913 30 1 -0.3633 0.5162 -0.8886 31 1 -0.3633 -1.0277 -0.0028 32 1 3.1291 -0.6893 -1.2684 33 1 1.6425 -0.2409 -2.1389 34 1 3.1887 -2.8189 -0.1002 35 1 1.7438 -3.8571 -0.1550 36 1 1.9971 -2.7241 2.0563 37 1 0.5007 -2.2334 1.2244 38 1 0.3887 -0.1773 2.5162 39 1 1.7168 1.0073 2.4867 40 1 2.5265 -1.5177 3.6201 41 1 0.0825 2.2552 5.4494 42 1 -2.3200 2.3538 5.9688 43 1 -3.5993 0.2867 6.3489 44 1 -2.4843 -1.8980 6.2226 45 1 -1.5910 -3.9513 7.8871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601415327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:08 Heat of formation + Delta-G solvation = -120.987064 kcal Electronic energy + Delta-G solvation = -28881.818598 eV Core-core repulsion = 24990.122540 eV Total energy + Delta-G solvation = -3891.696059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.92830 -37.60621 -36.30943 -35.99974 -34.83535 -33.91907 -33.29987 -31.50887 -30.23566 -29.56712 -27.24698 -26.62194 -25.54915 -23.20057 -22.51250 -21.67039 -21.14430 -19.05186 -18.52887 -17.72144 -16.92399 -16.50217 -16.06573 -15.87594 -15.79697 -15.36748 -15.09572 -14.50517 -14.41917 -14.18190 -13.73244 -13.32617 -13.22826 -13.06666 -12.81722 -12.78400 -12.45213 -11.91440 -11.90140 -11.59414 -11.53202 -11.30370 -11.27259 -11.19588 -11.15477 -11.07098 -11.01466 -10.88204 -10.70296 -10.50427 -10.44529 -10.16954 -9.91327 -9.50527 -9.46995 -9.40770 -8.75554 -8.04729 -7.61808 -7.04765 -4.77542 1.53290 2.32269 2.70623 2.94826 3.00022 3.08598 3.74864 3.81246 3.93031 4.39225 4.62447 4.63967 4.69996 4.76212 4.93014 5.07020 5.26516 5.29522 5.37143 5.45931 5.52822 5.57619 5.60330 5.66601 5.76531 5.80208 5.88048 6.00695 6.04855 6.11696 6.17989 6.19529 6.22858 6.36999 6.44014 6.48934 6.76151 6.94065 7.07225 7.12728 7.29339 7.47243 7.53141 7.66370 7.79746 7.87958 8.27543 8.48651 8.63644 9.88211 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010121 B = 0.005058 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.826479 B = 5534.070173 C = 6580.844414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 H 0.082 0.918 4 C 0.067 3.933 5 O -0.382 6.382 6 C 0.061 3.939 7 C -0.156 4.156 8 C -0.090 4.090 9 H 0.077 0.923 10 C 0.129 3.871 11 N -1.122 6.122 12 S 2.700 3.300 13 O -0.999 6.999 14 O -0.965 6.965 15 C -0.775 4.775 16 C -0.004 4.004 17 C -0.250 4.250 18 C -0.077 4.077 19 C -0.158 4.158 20 C 0.187 3.813 21 C -0.443 4.443 22 H 0.087 0.913 23 C 0.080 3.920 24 N -0.776 5.776 25 Si 0.915 3.085 26 H -0.255 1.255 27 H -0.269 1.269 28 H -0.270 1.270 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.409 0.591 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.093 0.907 44 H 0.125 0.875 45 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.138 0.219 -12.966 13.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 H 0.100 0.900 4 C -0.010 4.010 5 O -0.301 6.301 6 C -0.016 4.016 7 C -0.193 4.193 8 C -0.110 4.110 9 H 0.095 0.905 10 C 0.003 3.997 11 N -0.879 5.879 12 S 2.798 3.202 13 O -0.990 6.990 14 O -0.956 6.956 15 C -0.870 4.870 16 C -0.023 4.023 17 C -0.270 4.270 18 C -0.096 4.096 19 C -0.178 4.178 20 C 0.182 3.818 21 C -0.472 4.472 22 H 0.105 0.895 23 C -0.141 4.141 24 N -0.400 5.400 25 Si 0.739 3.261 26 H -0.178 1.178 27 H -0.193 1.193 28 H -0.195 1.195 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.110 0.890 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.243 0.757 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.143 0.857 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.533 0.503 -12.398 12.901 hybrid contribution -0.291 -1.055 0.233 1.119 sum 3.243 -0.552 -12.164 12.601 Atomic orbital electron populations 1.21884 0.94109 1.02873 1.01813 1.21762 0.97585 0.99906 0.94827 0.89972 1.22586 0.98101 0.82515 0.97789 1.87913 1.74231 1.22370 1.45540 1.22592 0.97751 0.95574 0.85639 1.22315 1.03201 0.95607 0.98226 1.21390 1.00485 0.95179 0.93920 0.90482 1.21235 0.98129 0.96717 0.83662 1.55688 1.71288 1.37239 1.23731 1.01075 0.75048 0.72255 0.71870 1.93442 1.82174 1.37180 1.86177 1.93545 1.77617 1.65977 1.58419 1.29843 1.22900 0.99320 1.34930 1.20251 0.94291 0.94922 0.92878 1.20486 0.94753 0.96762 1.15029 1.20906 0.97739 0.93526 0.97382 1.21514 0.94900 0.96579 1.04782 1.16999 0.91249 0.89998 0.83540 1.19866 1.11356 0.93902 1.22045 0.89474 1.25951 0.93344 1.01911 0.92917 1.69788 1.22424 1.34168 1.13577 0.86125 0.79755 0.80169 0.80091 1.17814 1.19343 1.19466 0.91900 0.92910 0.91600 0.93423 0.89023 0.93432 0.88955 0.90370 0.89958 0.91177 0.90901 0.75730 0.87482 0.88775 0.88853 0.85742 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.36 37.16 0.31 -1.32 16 2 C -0.12 -1.24 2.79 -90.48 -0.25 -1.49 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.07 0.64 6.25 37.21 0.23 0.87 16 5 O -0.38 -4.43 10.19 -35.23 -0.36 -4.79 16 6 C 0.06 0.64 6.84 37.21 0.25 0.89 16 7 C -0.16 -1.82 4.89 -26.59 -0.13 -1.95 16 8 C -0.09 -1.04 2.15 -90.44 -0.19 -1.24 16 9 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 10 C 0.13 1.87 5.00 -4.03 -0.02 1.85 16 11 N -1.12 -18.88 5.04 -10.61 -0.05 -18.94 16 12 S 2.70 58.19 4.96 -107.50 -0.53 57.65 16 13 O -1.00 -22.54 16.53 -57.17 -0.94 -23.49 16 14 O -0.97 -23.77 16.49 -57.17 -0.94 -24.71 16 15 C -0.77 -18.23 5.90 -38.87 -0.23 -18.46 16 16 C 0.00 -0.08 9.53 -39.66 -0.38 -0.46 16 17 C -0.25 -5.41 10.05 -39.29 -0.39 -5.80 16 18 C -0.08 -1.70 10.02 -39.66 -0.40 -2.10 16 19 C -0.16 -3.85 8.66 -38.87 -0.34 -4.19 16 20 C 0.19 4.67 5.55 -106.83 -0.59 4.08 16 21 C -0.44 -10.87 7.63 -37.74 -0.29 -11.16 16 22 H 0.09 1.99 5.84 -52.48 -0.31 1.68 16 23 C 0.08 1.89 5.24 -17.34 -0.09 1.80 16 24 N -0.78 -18.90 10.87 55.55 0.60 -18.29 16 25 Si 0.92 17.72 29.57 -169.99 -5.03 12.69 16 26 H -0.25 -4.74 7.11 56.52 0.40 -4.34 16 27 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 28 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 29 H 0.06 0.72 6.50 -51.93 -0.34 0.39 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.78 6.15 -51.93 -0.32 0.46 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.08 0.92 7.02 -51.93 -0.36 0.55 16 37 H 0.08 1.05 6.64 -51.93 -0.34 0.70 16 38 H 0.07 1.06 6.67 -51.93 -0.35 0.71 16 39 H 0.07 1.05 7.82 -51.93 -0.41 0.64 16 40 H 0.41 6.14 7.33 -34.47 -0.25 5.89 16 41 H 0.11 2.23 7.32 -52.49 -0.38 1.84 16 42 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.09 1.81 8.06 -52.49 -0.42 1.38 16 44 H 0.12 3.07 6.23 -52.49 -0.33 2.74 16 45 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -30.31 362.74 -10.63 -40.93 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.33 Total: 12.15 kcal Atomic # 6 Polarization: -36.16 SS G_CDS: -2.51 Total: -38.67 kcal Atomic # 7 Polarization: -37.78 SS G_CDS: 0.55 Total: -37.23 kcal Atomic # 8 Polarization: -50.74 SS G_CDS: -2.25 Total: -52.99 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Atomic # 16 Polarization: 58.19 SS G_CDS: -0.53 Total: 57.65 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.31 -10.63 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.055 kcal (2) G-P(sol) polarization free energy of solvation -30.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds