Wall clock time and date at job start Tue Mar 31 2020 23:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.56857 * 2 1 4 4 C 1.53102 * 109.45307 * 239.79335 * 2 1 3 5 5 O 1.42904 * 109.48292 * 297.61251 * 4 2 1 6 6 C 1.42899 * 114.09901 * 298.88574 * 5 4 2 7 7 C 1.53095 * 109.41030 * 61.16411 * 6 5 4 8 8 C 1.53166 * 109.52058 * 120.15491 * 2 1 3 9 9 H 1.09009 * 109.54724 * 182.88489 * 8 2 1 10 10 C 1.53005 * 109.54442 * 303.05763 * 8 2 1 11 11 N 1.46508 * 109.47077 * 184.82573 * 10 8 2 12 12 S 1.65602 * 119.99936 * 165.87190 * 11 10 8 13 13 O 1.42099 * 106.40074 * 309.20252 * 12 11 10 14 14 O 1.42103 * 106.39978 * 176.28078 * 12 11 10 15 15 C 1.76202 * 107.21604 * 62.74314 * 12 11 10 16 16 C 1.37643 * 120.12494 * 245.83744 * 15 12 11 17 17 C 1.38607 * 120.24950 * 180.02562 * 16 15 12 18 18 C 1.38661 * 120.49957 * 359.97438 * 17 16 15 19 19 C 1.37601 * 120.24894 * 0.02562 * 18 17 16 20 20 C 1.40696 * 120.13160 * 65.86089 * 15 12 11 21 21 C 1.41396 * 120.24192 * 359.97438 * 20 15 12 22 22 H 1.08005 * 120.00304 * 331.63463 * 21 20 15 23 23 C 1.39940 * 119.99807 * 151.63017 * 21 20 15 24 24 N 1.30826 * 120.00184 * 348.34544 * 23 21 20 25 25 Si 1.86801 * 119.99951 * 168.34576 * 23 21 20 26 26 H 1.48498 * 109.47267 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47402 * 119.99857 * 25 23 21 28 28 H 1.48506 * 109.47189 * 239.99926 * 25 23 21 29 29 H 1.08996 * 109.47147 * 299.84544 * 1 2 3 30 30 H 1.09002 * 109.46951 * 59.84764 * 1 2 3 31 31 H 1.09004 * 109.46964 * 179.84377 * 1 2 3 32 32 H 1.08998 * 109.40369 * 177.63185 * 4 2 1 33 33 H 1.08997 * 109.49268 * 57.64527 * 4 2 1 34 34 H 1.08993 * 109.48319 * 301.17840 * 6 5 4 35 35 H 1.08998 * 109.48067 * 181.14149 * 6 5 4 36 36 H 1.09002 * 109.52025 * 182.48117 * 7 6 5 37 37 H 1.08998 * 109.52754 * 62.29621 * 7 6 5 38 38 H 1.08993 * 109.46981 * 64.82982 * 10 8 2 39 39 H 1.08995 * 109.46889 * 304.82165 * 10 8 2 40 40 H 0.97003 * 120.00220 * 345.87023 * 11 10 8 41 41 H 1.08001 * 119.87355 * 0.03946 * 16 15 12 42 42 H 1.07997 * 119.75249 * 179.97438 * 17 16 15 43 43 H 1.08001 * 119.87402 * 180.28293 * 18 17 16 44 44 H 1.07998 * 120.12510 * 180.02562 * 19 18 17 45 45 H 0.97002 * 119.99855 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8951 1.0271 0.0000 4 6 2.0399 -0.7263 -1.2476 5 8 1.6099 -2.0887 -1.2151 6 6 2.0989 -2.8284 -0.0945 7 6 1.5895 -2.1878 1.1994 8 6 2.0418 -0.7252 1.2483 9 1 3.1307 -0.6810 1.2750 10 6 1.4715 -0.0546 2.4997 11 7 2.0515 -0.6751 3.6935 12 16 1.8960 0.0620 5.1683 13 8 2.3202 1.4066 4.9915 14 8 2.4783 -0.8181 6.1200 15 6 0.1748 0.1279 5.5395 16 6 -0.4692 1.3419 5.6171 17 6 -1.8229 1.3969 5.9094 18 6 -2.5439 0.2324 6.1263 19 6 -1.9208 -0.9923 6.0537 20 6 -0.5466 -1.0601 5.7581 21 6 0.1043 -2.3129 5.6809 22 1 0.9677 -2.4346 5.0436 23 6 -0.3702 -3.3953 6.4304 24 7 -1.2624 -3.2011 7.3673 25 14 0.2704 -5.1173 6.0932 26 1 1.2660 -5.0683 4.9924 27 1 0.9143 -5.6548 7.3187 28 1 -0.8593 -5.9977 5.7008 29 1 -0.3633 0.5114 0.8913 30 1 -0.3633 0.5162 -0.8886 31 1 -0.3633 -1.0277 -0.0028 32 1 3.1291 -0.6893 -1.2684 33 1 1.6425 -0.2409 -2.1389 34 1 3.1887 -2.8189 -0.1002 35 1 1.7438 -3.8571 -0.1550 36 1 1.9971 -2.7241 2.0563 37 1 0.5007 -2.2334 1.2244 38 1 0.3887 -0.1773 2.5162 39 1 1.7168 1.0073 2.4867 40 1 2.5265 -1.5177 3.6201 41 1 0.0825 2.2552 5.4494 42 1 -2.3200 2.3538 5.9688 43 1 -3.5993 0.2867 6.3489 44 1 -2.4843 -1.8980 6.2226 45 1 -1.5910 -3.9513 7.8871 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601415327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:06 Heat of formation + Delta-G solvation = -140.519147 kcal Electronic energy + Delta-G solvation = -28882.665573 eV Core-core repulsion = 24990.122540 eV Total energy + Delta-G solvation = -3892.543033 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.79773 -39.37763 -38.04547 -37.14355 -36.66168 -35.67508 -34.39082 -32.43778 -32.00932 -31.35324 -28.26328 -27.55102 -27.31541 -24.07378 -23.52775 -23.43782 -22.91975 -20.36448 -19.74349 -19.50447 -18.48596 -17.95282 -17.32635 -17.15507 -16.96754 -16.72910 -16.09959 -16.04038 -15.82736 -15.36160 -15.08462 -14.94082 -14.78093 -14.48169 -14.21475 -13.75164 -13.64548 -13.47901 -13.26120 -13.00463 -12.95861 -12.89695 -12.84485 -12.80546 -12.60644 -12.48562 -12.34605 -12.11436 -12.04895 -11.86293 -11.64793 -11.33626 -11.20421 -11.12230 -11.00409 -10.37417 -10.16568 -9.83686 -9.43119 -8.79574 -6.60885 -0.15733 0.53178 0.96927 1.35864 1.49215 1.51063 2.14773 2.35790 2.63520 2.98765 3.05620 3.47945 3.65784 3.74675 3.83068 3.93552 4.07893 4.29277 4.33030 4.37869 4.41580 4.49898 4.56483 4.65712 4.70872 4.76079 4.77913 4.84082 4.87990 4.90345 4.97818 5.06461 5.12846 5.15699 5.27339 5.30024 5.31549 5.34909 5.52221 5.57370 5.70860 5.82807 6.00728 6.08368 6.22895 6.35448 6.47924 6.67921 6.83903 8.16589 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010121 B = 0.005058 C = 0.004254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.826479 B = 5534.070173 C = 6580.844414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 H 0.097 0.903 4 C 0.065 3.935 5 O -0.399 6.399 6 C 0.063 3.937 7 C -0.157 4.157 8 C -0.084 4.084 9 H 0.091 0.909 10 C 0.124 3.876 11 N -1.109 6.109 12 S 2.720 3.280 13 O -1.010 7.010 14 O -1.000 7.000 15 C -0.791 4.791 16 C -0.017 4.017 17 C -0.250 4.250 18 C -0.076 4.076 19 C -0.186 4.186 20 C 0.163 3.837 21 C -0.471 4.471 22 H 0.095 0.905 23 C 0.038 3.962 24 N -0.809 5.809 25 Si 0.974 3.026 26 H -0.243 1.243 27 H -0.270 1.270 28 H -0.256 1.256 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.076 0.924 40 H 0.419 0.581 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.114 0.886 45 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.819 0.302 -14.658 15.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.138 4.138 3 H 0.115 0.885 4 C -0.011 4.011 5 O -0.318 6.318 6 C -0.014 4.014 7 C -0.195 4.195 8 C -0.104 4.104 9 H 0.109 0.891 10 C -0.001 4.001 11 N -0.870 5.870 12 S 2.816 3.184 13 O -1.000 7.000 14 O -0.990 6.990 15 C -0.885 4.885 16 C -0.036 4.036 17 C -0.270 4.270 18 C -0.095 4.095 19 C -0.206 4.206 20 C 0.158 3.842 21 C -0.499 4.499 22 H 0.112 0.888 23 C -0.180 4.180 24 N -0.433 5.433 25 Si 0.793 3.207 26 H -0.166 1.166 27 H -0.195 1.195 28 H -0.180 1.180 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.124 0.876 34 H 0.081 0.919 35 H 0.116 0.884 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.255 0.745 41 H 0.140 0.860 42 H 0.144 0.856 43 H 0.139 0.861 44 H 0.131 0.869 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.193 0.600 -14.089 14.712 hybrid contribution -0.551 -0.952 0.743 1.328 sum 3.642 -0.352 -13.346 13.838 Atomic orbital electron populations 1.21865 0.94893 1.02001 1.01873 1.21779 0.96884 1.00663 0.94441 0.88527 1.22724 0.99043 0.81566 0.97774 1.87897 1.74726 1.23365 1.45766 1.22622 0.98546 0.95652 0.84543 1.22308 1.02234 0.95861 0.99076 1.21381 1.01114 0.94974 0.92963 0.89113 1.21436 0.97709 0.97119 0.83875 1.55285 1.71165 1.37635 1.22895 1.00344 0.74003 0.71800 0.72262 1.93419 1.82060 1.37932 1.86608 1.93491 1.78069 1.66768 1.60673 1.30149 1.23964 0.99434 1.34968 1.20576 0.95076 0.95163 0.92809 1.20879 0.94604 0.97962 1.13602 1.21246 0.99206 0.92973 0.96071 1.21573 0.95109 0.97189 1.06719 1.17307 0.91828 0.90850 0.84188 1.20158 1.12172 0.94558 1.22979 0.88756 1.26819 0.93412 1.05409 0.92367 1.69830 1.23520 1.35574 1.14387 0.85265 0.79788 0.75550 0.80091 1.16606 1.19480 1.18042 0.93122 0.91547 0.92950 0.91980 0.87552 0.91941 0.88368 0.90693 0.91580 0.92189 0.90602 0.74519 0.86022 0.85574 0.86114 0.86857 0.89460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.09 8.36 71.98 0.60 -2.49 16 2 C -0.12 -2.17 2.79 -10.70 -0.03 -2.20 16 3 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 4 C 0.07 1.07 6.25 72.02 0.45 1.52 16 5 O -0.40 -8.42 10.19 -148.98 -1.52 -9.94 16 6 C 0.06 1.20 6.84 72.01 0.49 1.69 16 7 C -0.16 -3.50 4.89 30.68 0.15 -3.35 16 8 C -0.08 -1.82 2.15 -10.68 -0.02 -1.84 16 9 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 10 C 0.12 3.51 5.00 86.38 0.43 3.94 16 11 N -1.11 -36.82 5.04 -187.48 -0.94 -37.76 16 12 S 2.72 117.42 4.96 -56.49 -0.28 117.14 16 13 O -1.01 -45.02 16.53 -128.00 -2.12 -47.14 16 14 O -1.00 -49.83 16.49 -128.00 -2.11 -51.94 16 15 C -0.79 -37.58 5.90 22.73 0.13 -37.45 16 16 C -0.02 -0.74 9.53 22.22 0.21 -0.52 16 17 C -0.25 -10.51 10.05 22.46 0.23 -10.28 16 18 C -0.08 -3.35 10.02 22.22 0.22 -3.12 16 19 C -0.19 -9.26 8.66 22.73 0.20 -9.06 16 20 C 0.16 8.31 5.55 -21.29 -0.12 8.19 16 21 C -0.47 -23.54 7.63 23.46 0.18 -23.36 16 22 H 0.09 4.37 5.84 -2.91 -0.02 4.35 16 23 C 0.04 1.81 5.24 85.25 0.45 2.25 16 24 N -0.81 -40.29 10.87 21.83 0.24 -40.05 16 25 Si 0.97 36.09 29.57 68.60 2.03 38.12 16 26 H -0.24 -8.45 7.11 99.48 0.71 -7.74 16 27 H -0.27 -9.99 7.11 99.48 0.71 -9.28 16 28 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 29 H 0.05 1.15 6.50 -2.39 -0.02 1.14 16 30 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.05 1.22 6.15 -2.38 -0.01 1.20 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.69 7.02 -2.39 -0.02 1.67 16 37 H 0.07 1.68 6.64 -2.39 -0.02 1.66 16 38 H 0.06 1.83 6.67 -2.39 -0.02 1.81 16 39 H 0.08 2.10 7.82 -2.39 -0.02 2.08 16 40 H 0.42 12.31 7.33 -96.74 -0.71 11.60 16 41 H 0.12 4.94 7.32 -2.91 -0.02 4.92 16 42 H 0.13 4.41 8.06 -2.91 -0.02 4.39 16 43 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 44 H 0.11 5.79 6.23 -2.91 -0.02 5.77 16 45 H 0.29 13.12 8.30 -92.71 -0.77 12.36 16 Total: -1.00 -65.22 362.74 -0.82 -66.05 By element: Atomic # 1 Polarization: 41.29 SS G_CDS: 0.31 Total: 41.60 kcal Atomic # 6 Polarization: -79.65 SS G_CDS: 3.57 Total: -76.08 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -0.71 Total: -77.82 kcal Atomic # 8 Polarization: -103.27 SS G_CDS: -5.74 Total: -109.01 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Atomic # 16 Polarization: 117.42 SS G_CDS: -0.28 Total: 117.14 kcal Total: -65.22 -0.82 -66.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601415327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.470 kcal (2) G-P(sol) polarization free energy of solvation -65.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds