Wall clock time and date at job start Tue Mar 31 2020 23:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00704 * 2 1 4 4 C 1.52999 * 109.46732 * 304.62480 * 3 2 1 5 5 C 1.52998 * 109.46698 * 64.62074 * 3 2 1 6 6 N 1.46497 * 109.47281 * 65.00165 * 5 3 2 7 7 S 1.65601 * 120.00045 * 165.78092 * 6 5 3 8 8 O 1.42097 * 106.40322 * 308.54930 * 7 6 5 9 9 O 1.42102 * 106.40294 * 175.63340 * 7 6 5 10 10 C 1.76203 * 107.21770 * 62.09403 * 7 6 5 11 11 C 1.37637 * 120.12548 * 243.26682 * 10 7 6 12 12 C 1.38608 * 120.24975 * 179.74759 * 11 10 7 13 13 C 1.38657 * 120.49916 * 0.25378 * 12 11 10 14 14 C 1.37606 * 120.25169 * 0.02562 * 13 12 11 15 15 C 1.40693 * 120.12934 * 63.54002 * 10 7 6 16 16 C 1.41404 * 120.24410 * 359.97438 * 15 10 7 17 17 H 1.07996 * 119.99995 * 331.17071 * 16 15 10 18 18 C 1.39942 * 119.99459 * 151.16779 * 16 15 10 19 19 N 1.30820 * 120.00686 * 346.48453 * 18 16 15 20 20 Si 1.86809 * 119.99507 * 166.48904 * 18 16 15 21 21 H 1.48496 * 109.47078 * 59.99682 * 20 18 16 22 22 H 1.48500 * 109.47013 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46954 * 299.99696 * 20 18 16 24 24 C 1.52998 * 109.47358 * 184.62274 * 3 2 1 25 25 C 1.52992 * 117.49766 * 132.48231 * 24 3 2 26 26 C 1.52991 * 117.49819 * 63.85990 * 24 3 2 27 27 H 1.09001 * 109.47234 * 65.23494 * 1 2 3 28 28 H 1.08993 * 109.47646 * 185.23759 * 1 2 3 29 29 H 1.09005 * 109.46929 * 305.23778 * 1 2 3 30 30 H 1.09003 * 109.46862 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.47560 * 299.99478 * 4 3 2 32 32 H 1.09003 * 109.47737 * 59.99856 * 4 3 2 33 33 H 1.09001 * 109.47423 * 305.00027 * 5 3 2 34 34 H 1.09003 * 109.47270 * 185.00373 * 5 3 2 35 35 H 0.97003 * 119.99712 * 345.78757 * 6 5 3 36 36 H 1.08001 * 119.87445 * 0.02562 * 11 10 7 37 37 H 1.07997 * 119.75293 * 180.23374 * 12 11 10 38 38 H 1.07999 * 119.87823 * 179.97438 * 13 12 11 39 39 H 1.07990 * 120.12995 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00547 * 180.02562 * 19 18 16 41 41 H 1.09001 * 115.54617 * 278.18325 * 24 3 2 42 42 H 1.09003 * 117.49958 * 359.97438 * 25 24 3 43 43 H 1.09003 * 117.50452 * 145.01715 * 25 24 3 44 44 H 1.09007 * 117.49552 * 214.97553 * 26 24 3 45 45 H 1.08997 * 117.50179 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 1.4691 2.1046 -1.1870 5 6 1.6530 2.0227 1.3033 6 7 2.2720 1.3227 2.4316 7 16 2.3568 2.0550 3.9145 8 8 2.9339 3.3353 3.6974 9 8 2.9083 1.0949 4.8052 10 6 0.7027 2.3392 4.4511 11 6 0.2496 3.6248 4.6418 12 6 -1.0527 3.8515 5.0589 13 6 -1.9115 2.7886 5.2938 14 6 -1.4783 1.4947 5.1152 15 6 -0.1581 1.2527 4.6920 16 6 0.2980 -0.0725 4.5045 17 1 1.0694 -0.2804 3.7779 18 6 -0.2502 -1.1146 5.2607 19 7 -0.9808 -0.8459 6.3121 20 14 0.0615 -2.8896 4.7688 21 1 1.5214 -3.1602 4.7903 22 1 -0.6236 -3.7959 5.7252 23 1 -0.4653 -3.1238 3.4002 24 6 3.5313 1.1863 -0.1163 25 6 4.2331 2.0775 -1.1429 26 6 4.0959 0.5756 -1.4003 27 1 -0.3634 0.4305 -0.9332 28 1 -0.3634 -1.0233 0.0938 29 1 -0.3633 0.5930 0.8394 30 1 1.9122 3.1005 -1.1868 31 1 1.7236 1.5936 -2.1155 32 1 0.3855 2.1895 -1.1043 33 1 0.5703 2.0291 1.4295 34 1 2.0205 3.0483 1.2662 35 1 2.6324 0.4304 2.3100 36 1 0.9098 4.4602 4.4614 37 1 -1.4010 4.8636 5.2023 38 1 -2.9240 2.9767 5.6189 39 1 -2.1490 0.6684 5.2983 40 1 -1.3605 -1.5682 6.8364 41 1 4.0590 0.9784 0.8145 42 1 3.6113 2.7482 -1.7358 43 1 5.2229 2.4561 -0.8877 44 1 4.9955 -0.0340 -1.3144 45 1 3.3839 0.2582 -2.1621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601416267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:15 Heat of formation + Delta-G solvation = -74.824051 kcal Electronic energy + Delta-G solvation = -29192.036525 eV Core-core repulsion = 25302.342245 eV Total energy + Delta-G solvation = -3889.694280 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.72919 -37.59313 -36.34700 -36.18223 -34.80216 -34.30196 -33.84310 -30.58577 -30.20262 -29.56768 -27.13994 -25.72013 -25.45230 -23.00245 -22.34675 -21.64820 -21.14368 -19.24287 -18.57068 -17.69557 -16.93918 -16.67779 -16.60093 -15.78727 -15.43918 -15.13538 -14.98221 -14.59287 -14.33914 -13.95472 -13.52750 -13.28871 -13.19595 -13.01653 -12.74151 -12.55842 -12.49499 -11.99699 -11.87152 -11.54434 -11.43681 -11.28493 -11.23765 -11.14579 -11.10312 -10.99415 -10.94169 -10.80141 -10.68002 -10.52158 -10.36884 -10.00966 -9.90157 -9.50098 -9.41429 -9.34614 -8.69836 -8.03902 -7.61489 -7.03952 -4.75368 1.56653 2.34047 2.73777 2.97312 3.01562 3.13083 3.48117 3.78999 3.95718 4.19566 4.40708 4.59151 4.69138 4.77755 4.90209 5.03407 5.10314 5.28503 5.32051 5.46985 5.53135 5.55637 5.61873 5.67807 5.71876 5.74805 5.80171 5.96067 6.03473 6.05123 6.09998 6.13787 6.22794 6.25519 6.35873 6.43375 6.78740 6.94025 7.08210 7.30535 7.33752 7.48730 7.58758 7.69072 7.79795 7.89643 8.28669 8.50668 8.64284 9.90113 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.005447 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.423523 B = 5139.549618 C = 6119.709107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.369 6.369 3 C 0.141 3.859 4 C -0.183 4.183 5 C 0.105 3.895 6 N -1.114 6.114 7 S 2.700 3.300 8 O -0.999 6.999 9 O -0.965 6.965 10 C -0.777 4.777 11 C -0.002 4.002 12 C -0.252 4.252 13 C -0.076 4.076 14 C -0.158 4.158 15 C 0.188 3.812 16 C -0.446 4.446 17 H 0.090 0.910 18 C 0.082 3.918 19 N -0.775 5.775 20 Si 0.912 3.088 21 H -0.256 1.256 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.140 4.140 25 C -0.178 4.178 26 C -0.168 4.168 27 H 0.038 0.962 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.414 0.586 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.288 0.712 41 H 0.114 0.886 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.092 0.908 45 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.851 1.096 -13.346 13.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.288 6.288 3 C 0.100 3.900 4 C -0.240 4.240 5 C -0.022 4.022 6 N -0.872 5.872 7 S 2.798 3.202 8 O -0.989 6.989 9 O -0.955 6.955 10 C -0.872 4.872 11 C -0.022 4.022 12 C -0.272 4.272 13 C -0.095 4.095 14 C -0.178 4.178 15 C 0.184 3.816 16 C -0.474 4.474 17 H 0.107 0.893 18 C -0.139 4.139 19 N -0.398 5.398 20 Si 0.735 3.265 21 H -0.180 1.180 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.158 4.158 25 C -0.214 4.214 26 C -0.205 4.205 27 H 0.057 0.943 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.249 0.751 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.139 0.861 40 H 0.099 0.901 41 H 0.132 0.868 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.577 1.204 -12.685 13.000 hybrid contribution -0.949 -0.935 0.015 1.332 sum 1.628 0.269 -12.670 12.777 Atomic orbital electron populations 1.22852 0.81233 1.03124 1.00230 1.87972 1.19612 1.26349 1.94825 1.21022 0.91648 0.83950 0.93359 1.22528 1.02018 1.01064 0.98439 1.21650 0.98302 0.96247 0.86012 1.55533 1.75779 1.30009 1.25844 1.01074 0.74864 0.72374 0.71914 1.93442 1.77305 1.42383 1.85808 1.93546 1.78394 1.61737 1.61858 1.29864 1.23130 0.99944 1.34245 1.20252 0.94973 0.94149 0.92857 1.20472 0.95357 0.97073 1.14311 1.20889 0.97530 0.93718 0.97390 1.21440 0.96354 0.95234 1.04795 1.16979 0.90026 0.90626 0.84016 1.19854 1.17920 0.91313 1.18353 0.89259 1.25934 0.92462 1.02402 0.93128 1.69779 1.23327 1.36020 1.10670 0.86270 0.80598 0.79954 0.79713 1.18022 1.20001 1.18280 1.22100 0.92683 1.05841 0.95215 1.23153 1.01960 0.93838 1.02495 1.22852 1.02746 0.95431 0.99463 0.94326 0.89729 0.92566 0.90731 0.91361 0.91592 0.91190 0.89990 0.75101 0.87488 0.88790 0.88883 0.86103 0.90093 0.86778 0.88121 0.88597 0.88933 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.13 101.05 1.02 1.30 16 2 O -0.37 -5.25 10.12 -35.23 -0.36 -5.61 16 3 C 0.14 1.82 0.61 -90.62 -0.06 1.77 16 4 C -0.18 -1.87 6.74 37.16 0.25 -1.62 16 5 C 0.11 1.61 5.01 -4.04 -0.02 1.59 16 6 N -1.11 -19.79 4.21 -10.61 -0.04 -19.83 16 7 S 2.70 59.29 4.94 -107.50 -0.53 58.76 16 8 O -1.00 -22.66 16.56 -57.17 -0.95 -23.61 16 9 O -0.96 -24.32 16.71 -57.17 -0.96 -25.28 16 10 C -0.78 -18.45 5.88 -38.87 -0.23 -18.68 16 11 C 0.00 -0.05 9.53 -39.66 -0.38 -0.43 16 12 C -0.25 -5.46 10.05 -39.29 -0.39 -5.85 16 13 C -0.08 -1.69 10.02 -39.66 -0.40 -2.09 16 14 C -0.16 -3.86 8.66 -38.87 -0.34 -4.20 16 15 C 0.19 4.73 5.53 -106.82 -0.59 4.14 16 16 C -0.45 -11.08 7.66 -37.74 -0.29 -11.37 16 17 H 0.09 2.09 5.75 -52.49 -0.30 1.79 16 18 C 0.08 1.97 5.20 -17.34 -0.09 1.88 16 19 N -0.78 -19.04 11.02 55.55 0.61 -18.43 16 20 Si 0.91 18.06 29.58 -169.99 -5.03 13.04 16 21 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 22 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 24 C -0.14 -1.73 5.10 -90.63 -0.46 -2.20 16 25 C -0.18 -1.79 9.63 -26.74 -0.26 -2.04 16 26 C -0.17 -1.75 9.84 -26.74 -0.26 -2.01 16 27 H 0.04 0.41 6.65 -51.93 -0.35 0.06 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 0.79 6.21 -51.93 -0.32 0.47 16 30 H 0.07 0.69 6.80 -51.93 -0.35 0.33 16 31 H 0.07 0.64 6.99 -51.93 -0.36 0.28 16 32 H 0.07 0.64 6.61 -51.93 -0.34 0.30 16 33 H 0.07 1.08 6.31 -51.93 -0.33 0.75 16 34 H 0.08 1.21 7.84 -51.93 -0.41 0.80 16 35 H 0.41 6.98 7.64 -34.48 -0.26 6.72 16 36 H 0.11 2.24 7.33 -52.49 -0.38 1.86 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 39 H 0.12 2.97 6.36 -52.49 -0.33 2.64 16 40 H 0.29 6.39 8.30 -40.82 -0.34 6.06 16 41 H 0.11 1.53 7.01 -51.93 -0.36 1.16 16 42 H 0.10 0.89 5.88 -51.93 -0.31 0.59 16 43 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.09 0.90 8.14 -51.92 -0.42 0.47 16 45 H 0.09 0.96 7.36 -51.93 -0.38 0.58 16 LS Contribution 367.61 15.07 5.54 5.54 Total: -1.00 -30.45 367.61 -10.25 -40.70 By element: Atomic # 1 Polarization: 20.59 SS G_CDS: -6.04 Total: 14.55 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: -2.49 Total: -39.83 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.57 Total: -38.26 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -2.26 Total: -54.49 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.04 kcal Atomic # 16 Polarization: 59.29 SS G_CDS: -0.53 Total: 58.76 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.45 -10.25 -40.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.126 kcal (2) G-P(sol) polarization free energy of solvation -30.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds