Wall clock time and date at job start Tue Mar 31 2020 23:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 114.00704 * 2 1 4 4 C 1.52999 * 109.46732 * 304.62480 * 3 2 1 5 5 C 1.52998 * 109.46698 * 64.62074 * 3 2 1 6 6 N 1.46497 * 109.47281 * 65.00165 * 5 3 2 7 7 S 1.65601 * 120.00045 * 165.78092 * 6 5 3 8 8 O 1.42097 * 106.40322 * 308.54930 * 7 6 5 9 9 O 1.42102 * 106.40294 * 175.63340 * 7 6 5 10 10 C 1.76203 * 107.21770 * 62.09403 * 7 6 5 11 11 C 1.37637 * 120.12548 * 243.26682 * 10 7 6 12 12 C 1.38608 * 120.24975 * 179.74759 * 11 10 7 13 13 C 1.38657 * 120.49916 * 0.25378 * 12 11 10 14 14 C 1.37606 * 120.25169 * 0.02562 * 13 12 11 15 15 C 1.40693 * 120.12934 * 63.54002 * 10 7 6 16 16 C 1.41404 * 120.24410 * 359.97438 * 15 10 7 17 17 H 1.07996 * 119.99995 * 331.17071 * 16 15 10 18 18 C 1.39942 * 119.99459 * 151.16779 * 16 15 10 19 19 N 1.30820 * 120.00686 * 346.48453 * 18 16 15 20 20 Si 1.86809 * 119.99507 * 166.48904 * 18 16 15 21 21 H 1.48496 * 109.47078 * 59.99682 * 20 18 16 22 22 H 1.48500 * 109.47013 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46954 * 299.99696 * 20 18 16 24 24 C 1.52998 * 109.47358 * 184.62274 * 3 2 1 25 25 C 1.52992 * 117.49766 * 132.48231 * 24 3 2 26 26 C 1.52991 * 117.49819 * 63.85990 * 24 3 2 27 27 H 1.09001 * 109.47234 * 65.23494 * 1 2 3 28 28 H 1.08993 * 109.47646 * 185.23759 * 1 2 3 29 29 H 1.09005 * 109.46929 * 305.23778 * 1 2 3 30 30 H 1.09003 * 109.46862 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.47560 * 299.99478 * 4 3 2 32 32 H 1.09003 * 109.47737 * 59.99856 * 4 3 2 33 33 H 1.09001 * 109.47423 * 305.00027 * 5 3 2 34 34 H 1.09003 * 109.47270 * 185.00373 * 5 3 2 35 35 H 0.97003 * 119.99712 * 345.78757 * 6 5 3 36 36 H 1.08001 * 119.87445 * 0.02562 * 11 10 7 37 37 H 1.07997 * 119.75293 * 180.23374 * 12 11 10 38 38 H 1.07999 * 119.87823 * 179.97438 * 13 12 11 39 39 H 1.07990 * 120.12995 * 180.02562 * 14 13 12 40 40 H 0.96996 * 120.00547 * 180.02562 * 19 18 16 41 41 H 1.09001 * 115.54617 * 278.18325 * 24 3 2 42 42 H 1.09003 * 117.49958 * 359.97438 * 25 24 3 43 43 H 1.09003 * 117.50452 * 145.01715 * 25 24 3 44 44 H 1.09007 * 117.49552 * 214.97553 * 26 24 3 45 45 H 1.08997 * 117.50179 * 359.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 6 1.4691 2.1046 -1.1870 5 6 1.6530 2.0227 1.3033 6 7 2.2720 1.3227 2.4316 7 16 2.3568 2.0550 3.9145 8 8 2.9339 3.3353 3.6974 9 8 2.9083 1.0949 4.8052 10 6 0.7027 2.3392 4.4511 11 6 0.2496 3.6248 4.6418 12 6 -1.0527 3.8515 5.0589 13 6 -1.9115 2.7886 5.2938 14 6 -1.4783 1.4947 5.1152 15 6 -0.1581 1.2527 4.6920 16 6 0.2980 -0.0725 4.5045 17 1 1.0694 -0.2804 3.7779 18 6 -0.2502 -1.1146 5.2607 19 7 -0.9808 -0.8459 6.3121 20 14 0.0615 -2.8896 4.7688 21 1 1.5214 -3.1602 4.7903 22 1 -0.6236 -3.7959 5.7252 23 1 -0.4653 -3.1238 3.4002 24 6 3.5313 1.1863 -0.1163 25 6 4.2331 2.0775 -1.1429 26 6 4.0959 0.5756 -1.4003 27 1 -0.3634 0.4305 -0.9332 28 1 -0.3634 -1.0233 0.0938 29 1 -0.3633 0.5930 0.8394 30 1 1.9122 3.1005 -1.1868 31 1 1.7236 1.5936 -2.1155 32 1 0.3855 2.1895 -1.1043 33 1 0.5703 2.0291 1.4295 34 1 2.0205 3.0483 1.2662 35 1 2.6324 0.4304 2.3100 36 1 0.9098 4.4602 4.4614 37 1 -1.4010 4.8636 5.2023 38 1 -2.9240 2.9767 5.6189 39 1 -2.1490 0.6684 5.2983 40 1 -1.3605 -1.5682 6.8364 41 1 4.0590 0.9784 0.8145 42 1 3.6113 2.7482 -1.7358 43 1 5.2229 2.4561 -0.8877 44 1 4.9955 -0.0340 -1.3144 45 1 3.3839 0.2582 -2.1621 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601416267.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:14 Heat of formation + Delta-G solvation = -94.287730 kcal Electronic energy + Delta-G solvation = -29192.880534 eV Core-core repulsion = 25302.342245 eV Total energy + Delta-G solvation = -3890.538289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.72406 -39.37983 -38.02555 -37.26970 -36.66920 -35.78188 -35.50163 -32.04347 -31.55889 -31.34823 -28.11800 -27.37347 -26.75880 -24.00924 -23.42838 -23.13610 -22.94165 -20.31288 -20.17372 -19.50002 -18.50192 -18.12878 -17.65672 -17.35176 -17.11336 -16.36440 -16.18048 -16.02258 -15.82199 -15.38175 -15.03111 -14.93334 -14.46461 -14.45409 -14.13987 -13.77361 -13.59249 -13.41583 -13.28122 -13.03027 -12.99547 -12.94330 -12.85183 -12.78971 -12.54944 -12.45123 -12.25265 -12.17240 -11.99116 -11.73632 -11.65909 -11.22021 -11.19312 -11.15252 -10.89845 -10.51862 -10.14017 -9.83983 -9.43866 -8.81568 -6.60919 -0.16182 0.53004 0.97184 1.35110 1.45983 1.50841 2.14987 2.31218 2.59814 2.64860 2.98107 3.26952 3.46660 3.62043 3.70406 3.90638 4.02536 4.16260 4.27028 4.32755 4.41094 4.45465 4.49732 4.52334 4.55573 4.68859 4.71646 4.73516 4.85819 4.94517 4.98061 5.02787 5.08766 5.10754 5.13988 5.24893 5.29753 5.34165 5.41005 5.51800 5.70591 5.81413 5.99950 6.08558 6.17399 6.35941 6.47324 6.67798 6.82845 8.15513 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.005447 C = 0.004574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.423523 B = 5139.549618 C = 6119.709107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.384 6.384 3 C 0.145 3.855 4 C -0.179 4.179 5 C 0.098 3.902 6 N -1.102 6.102 7 S 2.719 3.281 8 O -1.008 7.008 9 O -1.003 7.003 10 C -0.792 4.792 11 C -0.016 4.016 12 C -0.250 4.250 13 C -0.075 4.075 14 C -0.184 4.184 15 C 0.166 3.834 16 C -0.474 4.474 17 H 0.092 0.908 18 C 0.043 3.957 19 N -0.806 5.806 20 Si 0.969 3.031 21 H -0.264 1.264 22 H -0.262 1.262 23 H -0.244 1.244 24 C -0.170 4.170 25 C -0.164 4.164 26 C -0.159 4.159 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.037 0.963 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.418 0.582 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.295 0.705 41 H 0.096 0.904 42 H 0.117 0.883 43 H 0.101 0.899 44 H 0.097 0.903 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.616 1.553 -15.295 15.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.304 6.304 3 C 0.104 3.896 4 C -0.237 4.237 5 C -0.029 4.029 6 N -0.862 5.862 7 S 2.815 3.185 8 O -0.998 6.998 9 O -0.993 6.993 10 C -0.887 4.887 11 C -0.036 4.036 12 C -0.270 4.270 13 C -0.093 4.093 14 C -0.204 4.204 15 C 0.162 3.838 16 C -0.502 4.502 17 H 0.110 0.890 18 C -0.176 4.176 19 N -0.430 5.430 20 Si 0.789 3.211 21 H -0.189 1.189 22 H -0.186 1.186 23 H -0.168 1.168 24 C -0.188 4.188 25 C -0.201 4.201 26 C -0.196 4.196 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.056 0.944 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.254 0.746 36 H 0.140 0.860 37 H 0.146 0.854 38 H 0.141 0.859 39 H 0.129 0.871 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.135 0.865 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.322 1.678 -14.630 14.908 hybrid contribution -0.875 -0.952 0.614 1.431 sum 1.447 0.727 -14.016 14.109 Atomic orbital electron populations 1.22913 0.80801 1.03203 1.00765 1.87954 1.20220 1.27328 1.94877 1.21060 0.92144 0.83568 0.92846 1.22520 1.02307 1.01374 0.97504 1.21923 0.97860 0.96704 0.86398 1.55147 1.75767 1.30217 1.25094 1.00364 0.74054 0.71817 0.72217 1.93418 1.77323 1.42893 1.86158 1.93487 1.79072 1.62746 1.64034 1.30123 1.23685 1.00344 1.34504 1.20576 0.95940 0.94165 0.92905 1.20879 0.94809 0.98585 1.12684 1.21243 0.99047 0.92970 0.96062 1.21495 0.96287 0.96099 1.06541 1.17264 0.90681 0.91285 0.84612 1.20094 1.18867 0.91998 1.19246 0.89038 1.26730 0.92063 1.05961 0.92808 1.69813 1.24261 1.37434 1.11466 0.85428 0.79912 0.75447 0.80347 1.18897 1.18598 1.16762 1.22102 0.92360 1.08807 0.95544 1.23273 1.02081 0.93878 1.00833 1.22905 1.02755 0.95960 0.98000 0.91801 0.89538 0.94406 0.89436 0.89943 0.91145 0.91688 0.89471 0.74563 0.86025 0.85444 0.85941 0.87098 0.89372 0.88594 0.86515 0.88032 0.88440 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.48 10.13 113.37 1.15 1.63 16 2 O -0.38 -10.59 10.12 -148.98 -1.51 -12.10 16 3 C 0.14 3.56 0.61 -10.80 -0.01 3.55 16 4 C -0.18 -3.21 6.74 71.98 0.49 -2.73 16 5 C 0.10 2.95 5.01 86.38 0.43 3.38 16 6 N -1.10 -39.72 4.21 -187.49 -0.79 -40.51 16 7 S 2.72 121.43 4.94 -56.49 -0.28 121.15 16 8 O -1.01 -45.72 16.56 -128.00 -2.12 -47.84 16 9 O -1.00 -52.07 16.71 -128.00 -2.14 -54.21 16 10 C -0.79 -38.10 5.88 22.73 0.13 -37.97 16 11 C -0.02 -0.72 9.53 22.22 0.21 -0.51 16 12 C -0.25 -10.38 10.05 22.46 0.23 -10.16 16 13 C -0.07 -3.23 10.02 22.22 0.22 -3.01 16 14 C -0.18 -9.12 8.66 22.73 0.20 -8.92 16 15 C 0.17 8.53 5.53 -21.29 -0.12 8.41 16 16 C -0.47 -24.19 7.66 23.46 0.18 -24.01 16 17 H 0.09 4.44 5.75 -2.91 -0.02 4.42 16 18 C 0.04 2.09 5.20 85.26 0.44 2.53 16 19 N -0.81 -40.44 11.02 21.83 0.24 -40.20 16 20 Si 0.97 37.22 29.58 68.60 2.03 39.25 16 21 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 22 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 23 H -0.24 -8.72 7.11 99.48 0.71 -8.01 16 24 C -0.17 -4.00 5.10 -10.80 -0.06 -4.05 16 25 C -0.16 -2.90 9.63 30.59 0.29 -2.61 16 26 C -0.16 -2.99 9.84 30.59 0.30 -2.69 16 27 H 0.06 1.23 6.65 -2.39 -0.02 1.22 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.04 1.06 6.21 -2.38 -0.01 1.05 16 30 H 0.09 1.34 6.80 -2.39 -0.02 1.33 16 31 H 0.08 1.27 6.99 -2.39 -0.02 1.25 16 32 H 0.07 1.20 6.61 -2.39 -0.02 1.18 16 33 H 0.06 2.02 6.31 -2.39 -0.02 2.01 16 34 H 0.09 2.51 7.84 -2.39 -0.02 2.49 16 35 H 0.42 14.50 7.64 -96.74 -0.74 13.76 16 36 H 0.12 4.96 7.33 -2.91 -0.02 4.94 16 37 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 38 H 0.12 4.48 8.06 -2.91 -0.02 4.46 16 39 H 0.11 5.61 6.36 -2.92 -0.02 5.59 16 40 H 0.30 13.33 8.30 -92.71 -0.77 12.56 16 41 H 0.10 2.57 7.01 -2.39 -0.02 2.56 16 42 H 0.12 1.68 5.88 -2.39 -0.01 1.67 16 43 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 45 H 0.10 1.78 7.36 -2.39 -0.02 1.76 16 Total: -1.00 -65.84 367.61 -0.18 -66.02 By element: Atomic # 1 Polarization: 45.31 SS G_CDS: 0.29 Total: 45.60 kcal Atomic # 6 Polarization: -81.25 SS G_CDS: 4.10 Total: -77.15 kcal Atomic # 7 Polarization: -80.16 SS G_CDS: -0.55 Total: -80.71 kcal Atomic # 8 Polarization: -108.39 SS G_CDS: -5.76 Total: -114.16 kcal Atomic # 14 Polarization: 37.22 SS G_CDS: 2.03 Total: 39.25 kcal Atomic # 16 Polarization: 121.43 SS G_CDS: -0.28 Total: 121.15 kcal Total: -65.84 -0.18 -66.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416267.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.266 kcal (2) G-P(sol) polarization free energy of solvation -65.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds