Wall clock time and date at job start Tue Mar 31 2020 23:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00273 * 2 1 4 4 C 1.53000 * 109.47116 * 307.12651 * 3 2 1 5 5 C 1.53002 * 109.47446 * 187.12701 * 3 2 1 6 6 N 1.46504 * 109.47167 * 64.94980 * 5 3 2 7 7 S 1.65597 * 120.00029 * 162.71572 * 6 5 3 8 8 O 1.42098 * 106.40307 * 311.11159 * 7 6 5 9 9 O 1.42101 * 106.39907 * 178.19713 * 7 6 5 10 10 C 1.76193 * 107.21980 * 64.65583 * 7 6 5 11 11 C 1.37648 * 120.12875 * 111.03910 * 10 7 6 12 12 C 1.38609 * 120.24462 * 180.32195 * 11 10 7 13 13 C 1.38655 * 120.50330 * 359.67218 * 12 11 10 14 14 C 1.37594 * 120.25283 * 359.97438 * 13 12 11 15 15 C 1.40693 * 120.12906 * 290.73515 * 10 7 6 16 16 C 1.41401 * 120.24284 * 359.97438 * 15 10 7 17 17 H 1.08002 * 119.99961 * 325.06657 * 16 15 10 18 18 C 1.39941 * 119.99965 * 145.06416 * 16 15 10 19 19 N 1.30823 * 120.00211 * 341.85555 * 18 16 15 20 20 Si 1.86799 * 120.00090 * 161.85319 * 18 16 15 21 21 H 1.48496 * 109.47505 * 184.93766 * 20 18 16 22 22 H 1.48504 * 109.47057 * 304.94172 * 20 18 16 23 23 H 1.48508 * 109.47072 * 64.93858 * 20 18 16 24 24 C 1.52998 * 109.46971 * 67.12956 * 3 2 1 25 25 C 1.52990 * 117.50079 * 5.05175 * 24 3 2 26 26 C 1.53001 * 117.49839 * 296.38987 * 24 3 2 27 27 H 1.08999 * 109.46920 * 289.18278 * 1 2 3 28 28 H 1.09000 * 109.46666 * 49.17520 * 1 2 3 29 29 H 1.08992 * 109.47231 * 169.17880 * 1 2 3 30 30 H 1.08993 * 109.47433 * 300.00147 * 4 3 2 31 31 H 1.08997 * 109.47187 * 60.00236 * 4 3 2 32 32 H 1.09000 * 109.46950 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.47062 * 304.95637 * 5 3 2 34 34 H 1.08992 * 109.47374 * 184.95482 * 5 3 2 35 35 H 0.97000 * 119.99565 * 342.71684 * 6 5 3 36 36 H 1.07997 * 119.87281 * 0.02562 * 11 10 7 37 37 H 1.07997 * 119.74694 * 179.69268 * 12 11 10 38 38 H 1.08010 * 119.87548 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.13221 * 180.02562 * 14 13 12 40 40 H 0.96998 * 119.99710 * 0.04269 * 19 18 16 41 41 H 1.09007 * 115.55069 * 150.72605 * 24 3 2 42 42 H 1.09003 * 117.50274 * 0.02562 * 25 24 3 43 43 H 1.08999 * 117.49976 * 145.02456 * 25 24 3 44 44 H 1.09003 * 117.50337 * 214.98317 * 26 24 3 45 45 H 1.09000 * 117.49919 * 0.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4223 2.1255 -1.1501 5 6 3.5253 1.1892 -0.1790 6 7 3.8195 0.6328 -1.5019 7 16 5.3377 0.7854 -2.1454 8 8 5.6986 2.1523 -2.0026 9 8 5.3117 0.1152 -3.3982 10 6 6.4355 -0.1293 -1.1145 11 6 7.0217 -1.2836 -1.5821 12 6 7.8804 -2.0087 -0.7709 13 6 8.1644 -1.5779 0.5161 14 6 7.5955 -0.4231 1.0019 15 6 6.7213 0.3207 0.1875 16 6 6.1304 1.5087 0.6761 17 1 5.9512 2.3375 0.0071 18 6 5.7778 1.6107 2.0265 19 7 5.6558 0.5304 2.7542 20 14 5.4814 3.2895 2.7903 21 1 5.2413 3.1351 4.2475 22 1 6.6725 4.1494 2.5732 23 1 4.2946 3.9188 2.1571 24 6 1.7056 1.9993 1.3291 25 6 0.9871 1.1819 2.4044 26 6 0.2388 2.2876 1.6555 27 1 -0.3633 0.3377 0.9706 28 1 -0.3633 0.6719 -0.7777 29 1 -0.3633 -1.0093 -0.1929 30 1 1.6394 1.6311 -2.0969 31 1 0.3430 2.2084 -1.0226 32 1 1.8661 3.1211 -1.1504 33 1 3.9327 0.5327 0.5900 34 1 3.9784 2.1765 -0.0911 35 1 3.1250 0.1751 -2.0009 36 1 6.8080 -1.6282 -2.5831 37 1 8.3321 -2.9159 -1.1442 38 1 8.8353 -2.1505 1.1394 39 1 7.8183 -0.0891 2.0045 40 1 5.8103 -0.3413 2.3578 41 1 2.4472 2.7260 1.6610 42 1 0.7317 0.1496 2.1652 43 1 1.2557 1.3710 3.4437 44 1 0.0155 3.2037 2.2025 45 1 -0.5090 1.9825 0.9236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601416269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:19 Heat of formation + Delta-G solvation = -65.262692 kcal Electronic energy + Delta-G solvation = -29800.317429 eV Core-core repulsion = 25911.037760 eV Total energy + Delta-G solvation = -3889.279668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.01505 -37.91353 -36.36340 -35.38144 -34.92858 -34.75290 -33.94904 -30.51328 -30.19726 -29.46902 -27.63499 -25.65396 -24.95141 -22.38206 -22.15770 -21.87111 -21.21464 -19.92732 -18.66955 -18.14890 -17.16259 -16.43944 -16.26655 -15.74314 -15.57559 -14.94705 -14.80353 -14.40075 -14.15746 -14.08497 -13.68993 -13.32188 -13.17339 -13.13105 -12.71916 -12.46799 -12.16730 -11.92368 -11.89595 -11.64235 -11.45427 -11.29524 -11.27843 -11.18600 -11.12779 -11.03087 -10.92290 -10.59689 -10.51632 -10.49491 -10.10225 -9.84806 -9.77319 -9.33002 -9.29373 -9.26160 -8.61137 -8.23210 -7.75611 -7.42393 -4.85231 1.52461 2.20481 2.62557 3.02262 3.10988 3.24560 3.76328 3.81871 3.92341 4.14002 4.35829 4.65421 4.76065 4.91589 5.01623 5.13712 5.15641 5.27234 5.42280 5.44682 5.47173 5.56176 5.63414 5.73499 5.85290 5.90329 5.93487 6.04164 6.11069 6.15903 6.22378 6.26462 6.27976 6.35456 6.49265 6.60336 6.76699 6.87187 7.15322 7.29004 7.36936 7.42000 7.56119 7.67213 7.71194 7.83866 7.98338 8.38882 8.59540 9.83469 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.006358 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.159159 B = 4403.138255 C = 5600.592799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.002 4.002 2 O -0.367 6.367 3 C 0.135 3.865 4 C -0.177 4.177 5 C 0.149 3.851 6 N -1.116 6.116 7 S 2.708 3.292 8 O -0.974 6.974 9 O -0.999 6.999 10 C -0.774 4.774 11 C 0.011 3.989 12 C -0.256 4.256 13 C -0.057 4.057 14 C -0.206 4.206 15 C 0.172 3.828 16 C -0.539 4.539 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.782 5.782 20 Si 1.054 2.946 21 H -0.271 1.271 22 H -0.270 1.270 23 H -0.267 1.267 24 C -0.173 4.173 25 C -0.171 4.171 26 C -0.194 4.194 27 H 0.062 0.938 28 H 0.046 0.954 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.099 0.901 35 H 0.408 0.592 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.302 0.698 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.321 1.965 0.226 10.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 O -0.285 6.285 3 C 0.095 3.905 4 C -0.234 4.234 5 C 0.023 3.977 6 N -0.873 5.873 7 S 2.805 3.195 8 O -0.964 6.964 9 O -0.990 6.990 10 C -0.868 4.868 11 C -0.009 4.009 12 C -0.276 4.276 13 C -0.076 4.076 14 C -0.226 4.226 15 C 0.167 3.833 16 C -0.567 4.567 17 H 0.137 0.863 18 C -0.182 4.182 19 N -0.404 5.404 20 Si 0.877 3.123 21 H -0.195 1.195 22 H -0.195 1.195 23 H -0.192 1.192 24 C -0.192 4.192 25 C -0.208 4.208 26 C -0.230 4.230 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.117 0.883 35 H 0.241 0.759 36 H 0.128 0.872 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.312 3.107 1.018 10.817 hybrid contribution 0.335 -1.450 -0.877 1.728 sum -9.976 1.657 0.141 10.114 Atomic orbital electron populations 1.23373 0.82764 1.02299 1.01389 1.88046 1.18626 1.27196 1.94681 1.21324 0.94384 0.82678 0.92164 1.22409 1.00859 1.01399 0.98775 1.21644 0.90780 1.01011 0.84276 1.55429 1.29281 1.73361 1.29250 1.00780 0.72521 0.73936 0.72227 1.93465 1.82535 1.33740 1.86619 1.93452 1.87061 1.76821 1.41693 1.29910 1.27347 1.14966 1.14626 1.20338 0.92148 0.91294 0.97153 1.20499 1.08316 1.02783 0.96042 1.20868 0.96611 0.95256 0.94884 1.21365 1.01990 0.98309 1.00933 1.17074 0.87075 0.90458 0.88689 1.21534 1.35781 1.01087 0.98264 0.86250 1.26993 0.92445 1.05140 0.93597 1.70494 1.27800 1.01202 1.40910 0.83807 0.78626 0.72929 0.76979 1.19532 1.19461 1.19199 1.22967 0.95601 1.03695 0.96891 1.23146 1.03236 0.97254 0.97115 1.23312 0.94849 1.00692 1.04181 0.91970 0.93572 0.90456 0.91508 0.92170 0.90856 0.89264 0.88341 0.75859 0.87202 0.88411 0.88549 0.87256 0.88341 0.86518 0.87449 0.88746 0.88983 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.03 8.60 101.05 0.87 0.84 16 2 O -0.37 -5.64 9.34 -35.23 -0.33 -5.97 16 3 C 0.14 2.08 0.77 -90.62 -0.07 2.01 16 4 C -0.18 -2.34 7.63 37.16 0.28 -2.06 16 5 C 0.15 2.78 3.44 -4.04 -0.01 2.77 16 6 N -1.12 -20.77 5.35 -10.61 -0.06 -20.83 16 7 S 2.71 58.95 5.44 -107.50 -0.58 58.36 16 8 O -0.97 -23.13 14.88 -57.17 -0.85 -23.98 16 9 O -1.00 -22.81 16.97 -57.17 -0.97 -23.78 16 10 C -0.77 -18.27 5.95 -38.87 -0.23 -18.51 16 11 C 0.01 0.24 9.54 -39.66 -0.38 -0.14 16 12 C -0.26 -5.50 10.05 -39.29 -0.39 -5.90 16 13 C -0.06 -1.24 10.02 -39.66 -0.40 -1.64 16 14 C -0.21 -4.89 7.78 -38.87 -0.30 -5.19 16 15 C 0.17 4.21 5.14 -106.82 -0.55 3.66 16 16 C -0.54 -12.80 4.65 -37.74 -0.18 -12.98 16 17 H 0.12 2.90 4.63 -52.49 -0.24 2.66 16 18 C 0.04 0.95 4.12 -17.34 -0.07 0.88 16 19 N -0.78 -18.30 12.74 55.55 0.71 -17.60 16 20 Si 1.05 19.73 29.92 -169.99 -5.09 14.64 16 21 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 22 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 23 H -0.27 -4.51 6.56 56.52 0.37 -4.14 16 24 C -0.17 -2.51 5.21 -90.63 -0.47 -2.98 16 25 C -0.17 -2.27 9.28 -26.70 -0.25 -2.52 16 26 C -0.19 -2.21 8.88 -26.69 -0.24 -2.45 16 27 H 0.06 0.66 3.63 -51.93 -0.19 0.47 16 28 H 0.05 0.47 5.61 -51.93 -0.29 0.18 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.07 0.87 6.95 -51.93 -0.36 0.51 16 31 H 0.06 0.66 5.25 -51.93 -0.27 0.39 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.89 6.42 -51.93 -0.33 1.56 16 34 H 0.10 1.91 6.02 -51.93 -0.31 1.60 16 35 H 0.41 6.72 7.67 -34.47 -0.26 6.45 16 36 H 0.11 2.30 7.33 -52.49 -0.38 1.92 16 37 H 0.10 1.83 8.06 -52.49 -0.42 1.40 16 38 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 39 H 0.11 2.59 6.91 -52.49 -0.36 2.23 16 40 H 0.30 7.34 6.21 -40.82 -0.25 7.09 16 41 H 0.12 1.80 7.49 -51.92 -0.39 1.41 16 42 H 0.11 1.44 5.48 -51.93 -0.28 1.16 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 45 H 0.10 0.99 4.96 -51.93 -0.26 0.73 16 LS Contribution 349.67 15.07 5.27 5.27 Total: -1.00 -28.23 349.67 -9.85 -38.08 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: -5.56 Total: 19.99 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: -2.39 Total: -44.19 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.65 Total: -38.42 kcal Atomic # 8 Polarization: -51.58 SS G_CDS: -2.15 Total: -53.73 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.09 Total: 14.64 kcal Atomic # 16 Polarization: 58.95 SS G_CDS: -0.58 Total: 58.36 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -28.23 -9.85 -38.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.184 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds