Wall clock time and date at job start Tue Mar 31 2020 23:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42899 * 114.00273 * 2 1 4 4 C 1.53000 * 109.47116 * 307.12651 * 3 2 1 5 5 C 1.53002 * 109.47446 * 187.12701 * 3 2 1 6 6 N 1.46504 * 109.47167 * 64.94980 * 5 3 2 7 7 S 1.65597 * 120.00029 * 162.71572 * 6 5 3 8 8 O 1.42098 * 106.40307 * 311.11159 * 7 6 5 9 9 O 1.42101 * 106.39907 * 178.19713 * 7 6 5 10 10 C 1.76193 * 107.21980 * 64.65583 * 7 6 5 11 11 C 1.37648 * 120.12875 * 111.03910 * 10 7 6 12 12 C 1.38609 * 120.24462 * 180.32195 * 11 10 7 13 13 C 1.38655 * 120.50330 * 359.67218 * 12 11 10 14 14 C 1.37594 * 120.25283 * 359.97438 * 13 12 11 15 15 C 1.40693 * 120.12906 * 290.73515 * 10 7 6 16 16 C 1.41401 * 120.24284 * 359.97438 * 15 10 7 17 17 H 1.08002 * 119.99961 * 325.06657 * 16 15 10 18 18 C 1.39941 * 119.99965 * 145.06416 * 16 15 10 19 19 N 1.30823 * 120.00211 * 341.85555 * 18 16 15 20 20 Si 1.86799 * 120.00090 * 161.85319 * 18 16 15 21 21 H 1.48496 * 109.47505 * 184.93766 * 20 18 16 22 22 H 1.48504 * 109.47057 * 304.94172 * 20 18 16 23 23 H 1.48508 * 109.47072 * 64.93858 * 20 18 16 24 24 C 1.52998 * 109.46971 * 67.12956 * 3 2 1 25 25 C 1.52990 * 117.50079 * 5.05175 * 24 3 2 26 26 C 1.53001 * 117.49839 * 296.38987 * 24 3 2 27 27 H 1.08999 * 109.46920 * 289.18278 * 1 2 3 28 28 H 1.09000 * 109.46666 * 49.17520 * 1 2 3 29 29 H 1.08992 * 109.47231 * 169.17880 * 1 2 3 30 30 H 1.08993 * 109.47433 * 300.00147 * 4 3 2 31 31 H 1.08997 * 109.47187 * 60.00236 * 4 3 2 32 32 H 1.09000 * 109.46950 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.47062 * 304.95637 * 5 3 2 34 34 H 1.08992 * 109.47374 * 184.95482 * 5 3 2 35 35 H 0.97000 * 119.99565 * 342.71684 * 6 5 3 36 36 H 1.07997 * 119.87281 * 0.02562 * 11 10 7 37 37 H 1.07997 * 119.74694 * 179.69268 * 12 11 10 38 38 H 1.08010 * 119.87548 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.13221 * 180.02562 * 14 13 12 40 40 H 0.96998 * 119.99710 * 0.04269 * 19 18 16 41 41 H 1.09007 * 115.55069 * 150.72605 * 24 3 2 42 42 H 1.09003 * 117.50274 * 0.02562 * 25 24 3 43 43 H 1.08999 * 117.49976 * 145.02456 * 25 24 3 44 44 H 1.09003 * 117.50337 * 214.98317 * 26 24 3 45 45 H 1.09000 * 117.49919 * 0.02562 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4223 2.1255 -1.1501 5 6 3.5253 1.1892 -0.1790 6 7 3.8195 0.6328 -1.5019 7 16 5.3377 0.7854 -2.1454 8 8 5.6986 2.1523 -2.0026 9 8 5.3117 0.1152 -3.3982 10 6 6.4355 -0.1293 -1.1145 11 6 7.0217 -1.2836 -1.5821 12 6 7.8804 -2.0087 -0.7709 13 6 8.1644 -1.5779 0.5161 14 6 7.5955 -0.4231 1.0019 15 6 6.7213 0.3207 0.1875 16 6 6.1304 1.5087 0.6761 17 1 5.9512 2.3375 0.0071 18 6 5.7778 1.6107 2.0265 19 7 5.6558 0.5304 2.7542 20 14 5.4814 3.2895 2.7903 21 1 5.2413 3.1351 4.2475 22 1 6.6725 4.1494 2.5732 23 1 4.2946 3.9188 2.1571 24 6 1.7056 1.9993 1.3291 25 6 0.9871 1.1819 2.4044 26 6 0.2388 2.2876 1.6555 27 1 -0.3633 0.3377 0.9706 28 1 -0.3633 0.6719 -0.7777 29 1 -0.3633 -1.0093 -0.1929 30 1 1.6394 1.6311 -2.0969 31 1 0.3430 2.2084 -1.0226 32 1 1.8661 3.1211 -1.1504 33 1 3.9327 0.5327 0.5900 34 1 3.9784 2.1765 -0.0911 35 1 3.1250 0.1751 -2.0009 36 1 6.8080 -1.6282 -2.5831 37 1 8.3321 -2.9159 -1.1442 38 1 8.8353 -2.1505 1.1394 39 1 7.8183 -0.0891 2.0045 40 1 5.8103 -0.3413 2.3578 41 1 2.4472 2.7260 1.6610 42 1 0.7317 0.1496 2.1652 43 1 1.2557 1.3710 3.4437 44 1 0.0155 3.2037 2.2025 45 1 -0.5090 1.9825 0.9236 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601416269.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:18:18 Heat of formation + Delta-G solvation = -83.268619 kcal Electronic energy + Delta-G solvation = -29801.098224 eV Core-core repulsion = 25911.037760 eV Total energy + Delta-G solvation = -3890.060464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.11501 -39.67320 -38.16569 -36.75192 -36.56948 -36.15851 -35.60129 -32.00555 -31.70218 -31.23802 -28.67168 -27.29987 -26.27871 -23.65213 -23.54274 -23.11060 -22.98341 -21.08716 -20.36380 -19.87823 -18.74423 -18.03318 -17.40214 -17.21797 -16.92084 -16.58234 -16.39705 -15.84539 -15.66571 -15.36221 -15.28195 -14.87012 -14.69066 -14.31092 -14.20409 -13.93902 -13.58900 -13.34959 -13.13249 -13.06640 -13.04021 -12.97773 -12.89233 -12.72757 -12.62853 -12.36340 -12.24728 -12.14245 -11.98661 -11.60268 -11.54959 -11.16859 -11.09226 -10.96469 -10.83242 -10.34915 -10.19910 -10.00108 -9.55467 -9.22598 -6.67299 -0.20673 0.41344 0.86283 1.48038 1.58320 1.76413 2.25113 2.31047 2.62039 2.71771 2.90840 3.06753 3.35708 3.59419 3.77871 3.80625 3.98636 4.12409 4.21045 4.26791 4.32219 4.43615 4.53480 4.57708 4.60705 4.62545 4.75007 4.79966 4.82692 4.86561 4.92286 4.95748 5.09897 5.14246 5.19088 5.25919 5.30104 5.34844 5.38146 5.51013 5.58579 5.78537 5.86096 6.02815 6.18199 6.25793 6.36743 6.59688 6.80580 8.01779 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010816 B = 0.006358 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2588.159159 B = 4403.138255 C = 5600.592799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.010 4.010 2 O -0.391 6.391 3 C 0.140 3.860 4 C -0.177 4.177 5 C 0.151 3.849 6 N -1.102 6.102 7 S 2.726 3.274 8 O -0.996 6.996 9 O -1.010 7.010 10 C -0.795 4.795 11 C -0.006 4.006 12 C -0.256 4.256 13 C -0.056 4.056 14 C -0.229 4.229 15 C 0.149 3.851 16 C -0.550 4.550 17 H 0.110 0.890 18 C 0.024 3.976 19 N -0.794 5.794 20 Si 1.079 2.921 21 H -0.266 1.266 22 H -0.268 1.268 23 H -0.240 1.240 24 C -0.199 4.199 25 C -0.180 4.180 26 C -0.161 4.161 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.419 0.581 36 H 0.123 0.877 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.289 0.711 41 H 0.103 0.897 42 H 0.104 0.896 43 H 0.092 0.908 44 H 0.109 0.891 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.106 2.152 0.133 12.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 O -0.311 6.311 3 C 0.099 3.901 4 C -0.234 4.234 5 C 0.025 3.975 6 N -0.862 5.862 7 S 2.822 3.178 8 O -0.986 6.986 9 O -1.001 7.001 10 C -0.888 4.888 11 C -0.026 4.026 12 C -0.275 4.275 13 C -0.075 4.075 14 C -0.249 4.249 15 C 0.144 3.856 16 C -0.577 4.577 17 H 0.127 0.873 18 C -0.196 4.196 19 N -0.416 5.416 20 Si 0.897 3.103 21 H -0.190 1.190 22 H -0.193 1.193 23 H -0.163 1.163 24 C -0.218 4.218 25 C -0.217 4.217 26 C -0.197 4.197 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.104 0.896 35 H 0.255 0.745 36 H 0.141 0.859 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.118 0.882 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.127 0.873 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -12.099 3.270 0.908 12.566 hybrid contribution 0.912 -1.625 -0.885 2.063 sum -11.187 1.645 0.023 11.307 Atomic orbital electron populations 1.23598 0.80643 1.03666 1.02562 1.88000 1.20988 1.27167 1.94932 1.21141 0.92010 0.83300 0.93615 1.22424 1.02500 1.00815 0.97673 1.21501 0.93689 0.99378 0.82955 1.55097 1.28335 1.73320 1.29455 1.00170 0.72790 0.73159 0.71703 1.93431 1.83255 1.34997 1.86882 1.93424 1.87438 1.76898 1.42356 1.30228 1.28309 1.15644 1.14644 1.20669 0.92498 0.91308 0.98102 1.20917 1.07408 1.03530 0.95688 1.21231 0.96245 0.94585 0.95424 1.21421 1.03005 0.99653 1.00780 1.17365 0.87648 0.91133 0.89417 1.21514 1.36564 1.00775 0.98865 0.87284 1.27948 0.91184 1.06960 0.93487 1.70578 1.29200 1.00986 1.40834 0.83540 0.79725 0.70187 0.76880 1.19009 1.19330 1.16339 1.22929 0.97596 1.04398 0.96917 1.23177 1.03973 0.97710 0.96856 1.23415 0.92817 1.00303 1.03174 0.90981 0.91885 0.89324 0.91661 0.89422 0.90939 0.92240 0.89578 0.74539 0.85872 0.85137 0.85454 0.88167 0.89746 0.87927 0.87792 0.88932 0.87304 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.19 8.60 113.37 0.97 0.78 16 2 O -0.39 -11.59 9.34 -148.98 -1.39 -12.98 16 3 C 0.14 4.19 0.77 -10.79 -0.01 4.18 16 4 C -0.18 -4.32 7.63 71.98 0.55 -3.77 16 5 C 0.15 5.73 3.44 86.38 0.30 6.02 16 6 N -1.10 -41.37 5.35 -187.48 -1.00 -42.38 16 7 S 2.73 120.25 5.44 -56.49 -0.31 119.94 16 8 O -1.00 -48.29 14.88 -128.00 -1.90 -50.19 16 9 O -1.01 -46.01 16.97 -128.00 -2.17 -48.18 16 10 C -0.79 -38.16 5.95 22.73 0.14 -38.02 16 11 C -0.01 -0.27 9.54 22.22 0.21 -0.06 16 12 C -0.26 -10.63 10.05 22.46 0.23 -10.40 16 13 C -0.06 -2.40 10.02 22.22 0.22 -2.18 16 14 C -0.23 -11.06 7.78 22.73 0.18 -10.88 16 15 C 0.15 7.50 5.14 -21.29 -0.11 7.40 16 16 C -0.55 -26.95 4.65 23.46 0.11 -26.84 16 17 H 0.11 5.50 4.63 -2.91 -0.01 5.49 16 18 C 0.02 1.12 4.12 85.26 0.35 1.48 16 19 N -0.79 -38.28 12.74 21.83 0.28 -38.00 16 20 Si 1.08 39.68 29.92 68.60 2.05 41.74 16 21 H -0.27 -9.52 7.11 99.48 0.71 -8.81 16 22 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.24 -7.72 6.56 99.48 0.65 -7.07 16 24 C -0.20 -5.54 5.21 -10.80 -0.06 -5.60 16 25 C -0.18 -4.54 9.28 30.62 0.28 -4.25 16 26 C -0.16 -3.17 8.88 30.62 0.27 -2.90 16 27 H 0.07 1.32 3.63 -2.39 -0.01 1.31 16 28 H 0.06 1.06 5.61 -2.39 -0.01 1.04 16 29 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.59 6.95 -2.39 -0.02 1.57 16 31 H 0.09 1.62 5.25 -2.39 -0.01 1.61 16 32 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.06 2.62 6.42 -2.38 -0.02 2.60 16 34 H 0.09 3.45 6.02 -2.39 -0.01 3.43 16 35 H 0.42 13.68 7.67 -96.74 -0.74 12.94 16 36 H 0.12 5.08 7.33 -2.91 -0.02 5.05 16 37 H 0.13 4.50 8.06 -2.91 -0.02 4.48 16 38 H 0.13 4.54 8.06 -2.91 -0.02 4.51 16 39 H 0.10 4.92 6.91 -2.91 -0.02 4.90 16 40 H 0.29 14.63 6.21 -92.71 -0.58 14.05 16 41 H 0.10 3.11 7.49 -2.38 -0.02 3.09 16 42 H 0.10 2.67 5.48 -2.39 -0.01 2.66 16 43 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.12 1.86 4.96 -2.39 -0.01 1.85 16 Total: -1.00 -61.65 349.67 -0.37 -62.01 By element: Atomic # 1 Polarization: 52.63 SS G_CDS: 0.45 Total: 53.07 kcal Atomic # 6 Polarization: -88.67 SS G_CDS: 3.64 Total: -85.04 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -0.73 Total: -80.37 kcal Atomic # 8 Polarization: -105.89 SS G_CDS: -5.47 Total: -111.35 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.05 Total: 41.74 kcal Atomic # 16 Polarization: 120.25 SS G_CDS: -0.31 Total: 119.94 kcal Total: -61.65 -0.37 -62.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601416269.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.256 kcal (2) G-P(sol) polarization free energy of solvation -61.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds