Wall clock time and date at job start Tue Mar 31 2020 23:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.05757 * 2 1 4 4 C 1.54269 * 110.03345 * 238.57779 * 2 1 3 5 5 C 1.54883 * 104.19555 * 217.10517 * 4 2 1 6 6 C 1.54889 * 102.74913 * 37.94331 * 5 4 2 7 7 C 1.53871 * 110.03459 * 121.41193 * 2 1 3 8 8 O 1.42900 * 110.03793 * 238.57192 * 7 2 1 9 9 C 1.53008 * 110.07213 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47163 * 179.53160 * 9 7 2 11 11 S 1.65597 * 120.00185 * 162.03576 * 10 9 7 12 12 O 1.42097 * 106.40698 * 178.82083 * 11 10 9 13 13 O 1.42100 * 106.40026 * 311.74230 * 11 10 9 14 14 C 1.76203 * 107.21838 * 65.27825 * 11 10 9 15 15 C 1.37639 * 120.12911 * 245.87268 * 14 11 10 16 16 C 1.38613 * 120.24464 * 179.97438 * 15 14 11 17 17 C 1.38651 * 120.50676 * 0.02562 * 16 15 14 18 18 C 1.37599 * 120.24681 * 0.02562 * 17 16 15 19 19 C 1.40697 * 120.12324 * 65.60522 * 14 11 10 20 20 C 1.41395 * 120.24891 * 359.97438 * 19 14 11 21 21 H 1.08003 * 119.99736 * 328.47283 * 20 19 14 22 22 C 1.39942 * 119.99988 * 148.47220 * 20 19 14 23 23 N 1.30817 * 120.00148 * 345.58348 * 22 20 19 24 24 Si 1.86800 * 119.99802 * 165.58439 * 22 20 19 25 25 H 1.48508 * 109.47376 * 64.99806 * 24 22 20 26 26 H 1.48493 * 109.47299 * 184.99858 * 24 22 20 27 27 H 1.48498 * 109.47246 * 304.99935 * 24 22 20 28 28 H 1.09006 * 109.46996 * 296.69587 * 1 2 3 29 29 H 1.08993 * 109.47041 * 56.69895 * 1 2 3 30 30 H 1.08995 * 109.47087 * 176.70259 * 1 2 3 31 31 H 1.08999 * 110.48692 * 98.42575 * 4 2 1 32 32 H 1.09002 * 110.59431 * 335.84208 * 4 2 1 33 33 H 1.08997 * 110.76247 * 279.62566 * 5 4 2 34 34 H 1.09007 * 110.75655 * 156.25650 * 5 4 2 35 35 H 1.09005 * 110.48534 * 203.37409 * 6 5 4 36 36 H 1.08996 * 110.48700 * 80.73654 * 6 5 4 37 37 H 0.96700 * 114.00811 * 181.37787 * 8 7 2 38 38 H 1.09003 * 109.46994 * 299.53012 * 9 7 2 39 39 H 1.08996 * 109.47064 * 59.53025 * 9 7 2 40 40 H 0.97002 * 119.99812 * 342.02795 * 10 9 7 41 41 H 1.07998 * 119.87417 * 0.02562 * 15 14 11 42 42 H 1.08005 * 119.74452 * 180.02562 * 16 15 14 43 43 H 1.07998 * 119.87918 * 180.02562 * 17 16 15 44 44 H 1.08001 * 120.12710 * 179.97438 * 18 17 16 45 45 H 0.97007 * 119.99755 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7556 -1.2368 5 6 3.3136 -1.5008 -0.7190 6 6 2.8874 -1.9406 0.7037 7 6 2.0571 -0.7534 1.2337 8 8 2.8825 0.1095 2.0187 9 6 0.8869 -1.2666 2.0753 10 7 1.4031 -1.9908 3.2395 11 16 0.4208 -2.2709 4.5428 12 8 1.1958 -3.0079 5.4785 13 8 -0.1983 -1.0300 4.8527 14 6 -0.8657 -3.3479 4.0045 15 6 -2.1682 -2.9045 3.9685 16 6 -3.1820 -3.7495 3.5449 17 6 -2.8977 -5.0489 3.1536 18 6 -1.6030 -5.5140 3.1824 19 6 -0.5646 -4.6628 3.6044 20 6 0.7706 -5.1274 3.6313 21 1 1.5849 -4.4408 3.4530 22 6 1.0368 -6.4769 3.8888 23 7 0.0991 -7.2468 4.3780 24 14 2.7311 -7.1789 3.5342 25 1 3.7297 -6.5368 4.4265 26 1 2.7206 -8.6439 3.7764 27 1 3.0903 -6.9139 2.1179 28 1 -0.3633 0.4617 0.9182 29 1 -0.3633 0.5642 -0.8589 30 1 -0.3633 -1.0259 -0.0591 31 1 2.3297 -0.0538 -2.0255 32 1 1.3151 -1.4660 -1.5986 33 1 4.1710 -0.8292 -0.6750 34 1 3.5325 -2.3680 -1.3421 35 1 3.7637 -2.1037 1.3311 36 1 2.2772 -2.8425 0.6574 37 1 3.2628 -0.3139 2.8005 38 1 0.2830 -0.4233 2.4105 39 1 0.2729 -1.9366 1.4735 40 1 2.3204 -2.3063 3.2467 41 1 -2.4010 -1.8941 4.2706 42 1 -4.2012 -3.3930 3.5194 43 1 -3.6954 -5.6985 2.8249 44 1 -1.3838 -6.5266 2.8776 45 1 0.2837 -8.1822 4.5569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:39 Heat of formation + Delta-G solvation = -124.257552 kcal Electronic energy + Delta-G solvation = -29163.314604 eV Core-core repulsion = 25271.476727 eV Total energy + Delta-G solvation = -3891.837878 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -39.81357 -37.62679 -36.24208 -35.23580 -34.85187 -34.09628 -33.82599 -31.51664 -30.26053 -29.62570 -28.39756 -25.57555 -25.09818 -24.09376 -21.70305 -21.18908 -21.08302 -19.04103 -18.61337 -17.72507 -17.21094 -16.83910 -16.13293 -15.68247 -15.44316 -15.29787 -14.87583 -14.39170 -14.21102 -13.75895 -13.73222 -13.34200 -13.21789 -12.91378 -12.76335 -12.71580 -12.12965 -11.98618 -11.75099 -11.58632 -11.45982 -11.33519 -11.31154 -11.18614 -11.10790 -11.06124 -11.02920 -10.76352 -10.72051 -10.62556 -10.58540 -10.30442 -9.92265 -9.75250 -9.49929 -9.42517 -8.81840 -8.07289 -7.63441 -7.07276 -4.78641 1.49770 2.30338 2.70038 2.93621 2.95631 3.08099 3.74542 3.87730 4.13718 4.37504 4.45259 4.58978 4.69984 4.78181 5.11565 5.22314 5.28279 5.30768 5.44936 5.46325 5.52751 5.60152 5.72771 5.80337 5.82262 5.88106 5.97540 6.00330 6.01645 6.08097 6.19391 6.20648 6.25835 6.33358 6.37285 6.38988 6.74832 6.88139 7.03685 7.26692 7.40541 7.46781 7.60547 7.73412 7.75733 7.85271 8.23283 8.47195 8.60125 9.88558 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010209 B = 0.005420 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.972278 B = 5165.196355 C = 6086.735240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.080 4.080 3 H 0.085 0.915 4 C -0.120 4.120 5 C -0.121 4.121 6 C -0.155 4.155 7 C 0.129 3.871 8 O -0.555 6.555 9 C 0.099 3.901 10 N -1.124 6.124 11 S 2.701 3.299 12 O -0.962 6.962 13 O -0.996 6.996 14 C -0.774 4.774 15 C -0.003 4.003 16 C -0.249 4.249 17 C -0.075 4.075 18 C -0.157 4.157 19 C 0.191 3.809 20 C -0.451 4.451 21 H 0.086 0.914 22 C 0.084 3.916 23 N -0.775 5.775 24 Si 0.910 3.090 25 H -0.258 1.258 26 H -0.274 1.274 27 H -0.259 1.259 28 H 0.065 0.935 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.375 0.625 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.407 0.593 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.272 6.567 -9.864 12.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.099 4.099 3 H 0.104 0.896 4 C -0.157 4.157 5 C -0.158 4.158 6 C -0.193 4.193 7 C 0.087 3.913 8 O -0.361 6.361 9 C -0.028 4.028 10 N -0.881 5.881 11 S 2.799 3.201 12 O -0.953 6.953 13 O -0.987 6.987 14 C -0.869 4.869 15 C -0.023 4.023 16 C -0.269 4.269 17 C -0.094 4.094 18 C -0.177 4.177 19 C 0.186 3.814 20 C -0.480 4.480 21 H 0.104 0.896 22 C -0.138 4.138 23 N -0.398 5.398 24 Si 0.733 3.267 25 H -0.182 1.182 26 H -0.199 1.199 27 H -0.183 1.183 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.223 0.777 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.240 0.760 41 H 0.126 0.874 42 H 0.113 0.887 43 H 0.112 0.888 44 H 0.135 0.865 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.010 7.204 -9.382 12.490 hybrid contribution 0.691 -1.580 -0.080 1.726 sum 4.702 5.624 -9.461 11.969 Atomic orbital electron populations 1.22064 0.94259 1.02741 1.02360 1.21648 0.95872 1.00178 0.92197 0.89634 1.22463 0.97547 0.98967 0.96734 1.22423 0.97712 0.99782 0.95905 1.23127 1.00258 0.98711 0.97163 1.22060 0.89306 0.89426 0.90521 1.86505 1.67202 1.41097 1.41315 1.22118 0.96712 0.96386 0.87574 1.55754 1.25728 1.72075 1.34549 1.01089 0.73588 0.73015 0.72456 1.93552 1.70168 1.72822 1.58744 1.93453 1.77736 1.44447 1.83022 1.29908 1.11272 1.12652 1.33045 1.20273 0.91736 0.97474 0.92812 1.20489 0.97326 0.95639 1.13457 1.20888 0.96174 0.94899 0.97437 1.21373 0.92115 1.00161 1.04027 1.16972 0.93251 0.88261 0.82904 1.19739 0.92603 0.94597 1.41031 0.89582 1.25897 0.99654 0.96604 0.91659 1.69778 1.34886 1.07740 1.27371 0.86298 0.81683 0.78282 0.80408 1.18169 1.19897 1.18304 0.91636 0.92358 0.91614 0.91576 0.91063 0.91472 0.91515 0.91009 0.89629 0.77664 0.89619 0.90561 0.75977 0.87408 0.88690 0.88796 0.86462 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 7.91 37.16 0.29 -1.41 16 2 C -0.08 -0.90 3.31 -89.50 -0.30 -1.19 16 3 H 0.09 0.99 7.95 -51.93 -0.41 0.58 16 4 C -0.12 -1.17 6.36 -25.07 -0.16 -1.33 16 5 C -0.12 -1.23 6.91 -24.74 -0.17 -1.40 16 6 C -0.15 -1.81 5.30 -25.07 -0.13 -1.94 16 7 C 0.13 1.62 1.05 -89.50 -0.09 1.53 16 8 O -0.56 -7.32 12.90 -35.23 -0.45 -7.77 16 9 C 0.10 1.45 4.06 -4.04 -0.02 1.44 16 10 N -1.12 -18.53 4.59 -10.61 -0.05 -18.58 16 11 S 2.70 57.59 4.97 -107.50 -0.53 57.05 16 12 O -0.96 -23.52 16.58 -57.17 -0.95 -24.47 16 13 O -1.00 -22.40 16.39 -57.17 -0.94 -23.33 16 14 C -0.77 -18.05 5.94 -38.87 -0.23 -18.28 16 15 C 0.00 -0.07 9.54 -39.66 -0.38 -0.45 16 16 C -0.25 -5.32 10.05 -39.29 -0.39 -5.71 16 17 C -0.08 -1.64 10.02 -39.66 -0.40 -2.04 16 18 C -0.16 -3.78 8.65 -38.87 -0.34 -4.12 16 19 C 0.19 4.72 5.50 -106.82 -0.59 4.13 16 20 C -0.45 -10.96 7.51 -37.74 -0.28 -11.24 16 21 H 0.09 1.92 5.94 -52.48 -0.31 1.61 16 22 C 0.08 1.97 5.16 -17.35 -0.09 1.88 16 23 N -0.77 -18.89 11.23 55.55 0.62 -18.27 16 24 Si 0.91 17.51 29.58 -169.99 -5.03 12.48 16 25 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 26 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 27 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 28 H 0.06 0.75 6.64 -51.93 -0.34 0.41 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.72 6.79 -51.93 -0.35 0.37 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.68 7.82 -51.93 -0.41 0.28 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 35 H 0.07 0.79 8.05 -51.93 -0.42 0.37 16 36 H 0.09 1.08 7.84 -51.93 -0.41 0.67 16 37 H 0.38 4.18 8.23 45.56 0.37 4.55 16 38 H 0.09 1.32 6.27 -51.93 -0.33 0.99 16 39 H 0.08 1.12 6.75 -51.93 -0.35 0.77 16 40 H 0.41 5.87 7.45 -34.47 -0.26 5.61 16 41 H 0.11 2.23 7.32 -52.49 -0.38 1.84 16 42 H 0.09 1.77 8.06 -52.48 -0.42 1.34 16 43 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 44 H 0.12 2.84 6.56 -52.49 -0.34 2.50 16 45 H 0.29 6.35 8.30 -40.82 -0.34 6.01 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -30.51 365.41 -10.71 -41.21 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: -5.61 Total: 16.30 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: -3.27 Total: -40.13 kcal Atomic # 7 Polarization: -37.42 SS G_CDS: 0.57 Total: -36.85 kcal Atomic # 8 Polarization: -53.24 SS G_CDS: -2.34 Total: -55.58 kcal Atomic # 14 Polarization: 17.51 SS G_CDS: -5.03 Total: 12.48 kcal Atomic # 16 Polarization: 57.59 SS G_CDS: -0.53 Total: 57.05 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.51 -10.71 -41.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.047 kcal (2) G-P(sol) polarization free energy of solvation -30.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds