Wall clock time and date at job start Tue Mar 31 2020 23:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 110.05757 * 2 1 4 4 C 1.54269 * 110.03345 * 238.57779 * 2 1 3 5 5 C 1.54883 * 104.19555 * 217.10517 * 4 2 1 6 6 C 1.54889 * 102.74913 * 37.94331 * 5 4 2 7 7 C 1.53871 * 110.03459 * 121.41193 * 2 1 3 8 8 O 1.42900 * 110.03793 * 238.57192 * 7 2 1 9 9 C 1.53008 * 110.07213 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47163 * 179.53160 * 9 7 2 11 11 S 1.65597 * 120.00185 * 162.03576 * 10 9 7 12 12 O 1.42097 * 106.40698 * 178.82083 * 11 10 9 13 13 O 1.42100 * 106.40026 * 311.74230 * 11 10 9 14 14 C 1.76203 * 107.21838 * 65.27825 * 11 10 9 15 15 C 1.37639 * 120.12911 * 245.87268 * 14 11 10 16 16 C 1.38613 * 120.24464 * 179.97438 * 15 14 11 17 17 C 1.38651 * 120.50676 * 0.02562 * 16 15 14 18 18 C 1.37599 * 120.24681 * 0.02562 * 17 16 15 19 19 C 1.40697 * 120.12324 * 65.60522 * 14 11 10 20 20 C 1.41395 * 120.24891 * 359.97438 * 19 14 11 21 21 H 1.08003 * 119.99736 * 328.47283 * 20 19 14 22 22 C 1.39942 * 119.99988 * 148.47220 * 20 19 14 23 23 N 1.30817 * 120.00148 * 345.58348 * 22 20 19 24 24 Si 1.86800 * 119.99802 * 165.58439 * 22 20 19 25 25 H 1.48508 * 109.47376 * 64.99806 * 24 22 20 26 26 H 1.48493 * 109.47299 * 184.99858 * 24 22 20 27 27 H 1.48498 * 109.47246 * 304.99935 * 24 22 20 28 28 H 1.09006 * 109.46996 * 296.69587 * 1 2 3 29 29 H 1.08993 * 109.47041 * 56.69895 * 1 2 3 30 30 H 1.08995 * 109.47087 * 176.70259 * 1 2 3 31 31 H 1.08999 * 110.48692 * 98.42575 * 4 2 1 32 32 H 1.09002 * 110.59431 * 335.84208 * 4 2 1 33 33 H 1.08997 * 110.76247 * 279.62566 * 5 4 2 34 34 H 1.09007 * 110.75655 * 156.25650 * 5 4 2 35 35 H 1.09005 * 110.48534 * 203.37409 * 6 5 4 36 36 H 1.08996 * 110.48700 * 80.73654 * 6 5 4 37 37 H 0.96700 * 114.00811 * 181.37787 * 8 7 2 38 38 H 1.09003 * 109.46994 * 299.53012 * 9 7 2 39 39 H 1.08996 * 109.47064 * 59.53025 * 9 7 2 40 40 H 0.97002 * 119.99812 * 342.02795 * 10 9 7 41 41 H 1.07998 * 119.87417 * 0.02562 * 15 14 11 42 42 H 1.08005 * 119.74452 * 180.02562 * 16 15 14 43 43 H 1.07998 * 119.87918 * 180.02562 * 17 16 15 44 44 H 1.08001 * 120.12710 * 179.97438 * 18 17 16 45 45 H 0.97007 * 119.99755 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0585 -0.7556 -1.2368 5 6 3.3136 -1.5008 -0.7190 6 6 2.8874 -1.9406 0.7037 7 6 2.0571 -0.7534 1.2337 8 8 2.8825 0.1095 2.0187 9 6 0.8869 -1.2666 2.0753 10 7 1.4031 -1.9908 3.2395 11 16 0.4208 -2.2709 4.5428 12 8 1.1958 -3.0079 5.4785 13 8 -0.1983 -1.0300 4.8527 14 6 -0.8657 -3.3479 4.0045 15 6 -2.1682 -2.9045 3.9685 16 6 -3.1820 -3.7495 3.5449 17 6 -2.8977 -5.0489 3.1536 18 6 -1.6030 -5.5140 3.1824 19 6 -0.5646 -4.6628 3.6044 20 6 0.7706 -5.1274 3.6313 21 1 1.5849 -4.4408 3.4530 22 6 1.0368 -6.4769 3.8888 23 7 0.0991 -7.2468 4.3780 24 14 2.7311 -7.1789 3.5342 25 1 3.7297 -6.5368 4.4265 26 1 2.7206 -8.6439 3.7764 27 1 3.0903 -6.9139 2.1179 28 1 -0.3633 0.4617 0.9182 29 1 -0.3633 0.5642 -0.8589 30 1 -0.3633 -1.0259 -0.0591 31 1 2.3297 -0.0538 -2.0255 32 1 1.3151 -1.4660 -1.5986 33 1 4.1710 -0.8292 -0.6750 34 1 3.5325 -2.3680 -1.3421 35 1 3.7637 -2.1037 1.3311 36 1 2.2772 -2.8425 0.6574 37 1 3.2628 -0.3139 2.8005 38 1 0.2830 -0.4233 2.4105 39 1 0.2729 -1.9366 1.4735 40 1 2.3204 -2.3063 3.2467 41 1 -2.4010 -1.8941 4.2706 42 1 -4.2012 -3.3930 3.5194 43 1 -3.6954 -5.6985 2.8249 44 1 -1.3838 -6.5266 2.8776 45 1 0.2837 -8.1822 4.5569 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601421100.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:38 Heat of formation + Delta-G solvation = -145.341298 kcal Electronic energy + Delta-G solvation = -29164.228864 eV Core-core repulsion = 25271.476727 eV Total energy + Delta-G solvation = -3892.752137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.79639 -39.37897 -38.04278 -36.67817 -36.23023 -35.67856 -35.26932 -32.40157 -32.02231 -31.38987 -29.44788 -27.34162 -26.03874 -25.15258 -23.45130 -22.95312 -21.97135 -20.32967 -19.91031 -19.48850 -18.59197 -18.29050 -17.66547 -17.13964 -16.76834 -16.50233 -16.21057 -15.99482 -15.57722 -15.09378 -14.96645 -14.87174 -14.61816 -14.44640 -13.87855 -13.79192 -13.64427 -13.29296 -13.12375 -13.00804 -12.96705 -12.87724 -12.85468 -12.78271 -12.73221 -12.47605 -12.28986 -12.18224 -11.88990 -11.64815 -11.56617 -11.43850 -11.32997 -11.17006 -11.11573 -10.79899 -10.25817 -9.84152 -9.42615 -8.80639 -6.60132 -0.18540 0.52747 0.97115 1.36723 1.47687 1.51969 2.15807 2.31756 2.63689 2.97484 3.21064 3.45151 3.51607 3.67847 3.72450 3.90690 4.26749 4.29614 4.33267 4.42462 4.46412 4.48852 4.55421 4.60818 4.66262 4.71709 4.83229 4.90489 4.97808 5.02015 5.05672 5.07938 5.12107 5.23071 5.29077 5.30445 5.33847 5.39750 5.51890 5.55157 5.70128 5.79549 5.98969 6.07986 6.14539 6.46192 6.68469 6.78218 6.82530 8.18118 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010209 B = 0.005420 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.972278 B = 5165.196355 C = 6086.735240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.080 4.080 3 H 0.084 0.916 4 C -0.116 4.116 5 C -0.117 4.117 6 C -0.158 4.158 7 C 0.132 3.868 8 O -0.564 6.564 9 C 0.096 3.904 10 N -1.109 6.109 11 S 2.722 3.278 12 O -0.997 6.997 13 O -1.009 7.009 14 C -0.790 4.790 15 C -0.017 4.017 16 C -0.248 4.248 17 C -0.074 4.074 18 C -0.183 4.183 19 C 0.167 3.833 20 C -0.479 4.479 21 H 0.095 0.905 22 C 0.042 3.958 23 N -0.810 5.810 24 Si 0.971 3.029 25 H -0.261 1.261 26 H -0.266 1.266 27 H -0.242 1.242 28 H 0.054 0.946 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.382 0.618 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.418 0.582 41 H 0.121 0.879 42 H 0.127 0.873 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 7.020 -11.475 14.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.099 4.099 3 H 0.102 0.898 4 C -0.153 4.153 5 C -0.155 4.155 6 C -0.196 4.196 7 C 0.089 3.911 8 O -0.371 6.371 9 C -0.030 4.030 10 N -0.870 5.870 11 S 2.818 3.182 12 O -0.987 6.987 13 O -1.000 7.000 14 C -0.884 4.884 15 C -0.037 4.037 16 C -0.268 4.268 17 C -0.093 4.093 18 C -0.203 4.203 19 C 0.163 3.837 20 C -0.507 4.507 21 H 0.113 0.887 22 C -0.177 4.177 23 N -0.434 5.434 24 Si 0.790 3.210 25 H -0.186 1.186 26 H -0.190 1.190 27 H -0.165 1.165 28 H 0.073 0.927 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.231 0.769 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.254 0.746 41 H 0.139 0.861 42 H 0.145 0.855 43 H 0.141 0.859 44 H 0.125 0.875 45 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.585 7.652 -10.996 14.159 hybrid contribution 0.402 -1.629 0.432 1.732 sum 4.986 6.023 -10.564 13.143 Atomic orbital electron populations 1.22067 0.94144 1.02636 1.02647 1.21695 0.96014 1.00081 0.92157 0.89770 1.22467 0.97348 0.99158 0.96368 1.22425 0.97953 1.00269 0.94833 1.23143 1.00167 0.97782 0.98515 1.22119 0.88486 0.89995 0.90463 1.86497 1.67187 1.41631 1.41824 1.22304 0.97851 0.95887 0.86955 1.55294 1.25599 1.71967 1.34130 1.00314 0.73124 0.72167 0.72600 1.93498 1.70814 1.73588 1.60847 1.93427 1.78223 1.44641 1.83679 1.30192 1.12570 1.12873 1.32800 1.20586 0.91747 0.98392 0.92943 1.20885 0.98702 0.95191 1.12033 1.21233 0.96126 0.95592 0.96305 1.21437 0.93265 1.00012 1.05605 1.17277 0.93954 0.89007 0.83468 1.20056 0.92908 0.95617 1.42083 0.88673 1.26767 1.03288 0.96629 0.90977 1.69827 1.36849 1.08315 1.28373 0.85401 0.76847 0.77835 0.80906 1.18565 1.18970 1.16535 0.92740 0.90539 0.92083 0.89926 0.90801 0.91066 0.90532 0.90373 0.90688 0.76854 0.90323 0.90586 0.74625 0.86116 0.85483 0.85939 0.87506 0.89449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.22 7.91 71.98 0.57 -2.65 16 2 C -0.08 -1.67 3.31 -10.07 -0.03 -1.70 16 3 H 0.08 1.80 7.95 -2.39 -0.02 1.78 16 4 C -0.12 -2.00 6.36 31.67 0.20 -1.79 16 5 C -0.12 -2.11 6.91 31.88 0.22 -1.89 16 6 C -0.16 -3.46 5.30 31.67 0.17 -3.29 16 7 C 0.13 3.16 1.05 -10.07 -0.01 3.15 16 8 O -0.56 -14.17 12.90 -148.98 -1.92 -16.10 16 9 C 0.10 2.79 4.06 86.38 0.35 3.14 16 10 N -1.11 -36.37 4.59 -187.48 -0.86 -37.23 16 11 S 2.72 116.91 4.97 -56.49 -0.28 116.63 16 12 O -1.00 -49.50 16.58 -128.00 -2.12 -51.62 16 13 O -1.01 -45.38 16.39 -128.00 -2.10 -47.48 16 14 C -0.79 -37.17 5.94 22.73 0.14 -37.04 16 15 C -0.02 -0.75 9.54 22.22 0.21 -0.54 16 16 C -0.25 -10.23 10.05 22.46 0.23 -10.00 16 17 C -0.07 -3.17 10.02 22.22 0.22 -2.95 16 18 C -0.18 -8.94 8.65 22.73 0.20 -8.74 16 19 C 0.17 8.41 5.50 -21.29 -0.12 8.29 16 20 C -0.48 -23.56 7.51 23.46 0.18 -23.38 16 21 H 0.10 4.29 5.94 -2.91 -0.02 4.27 16 22 C 0.04 1.97 5.16 85.26 0.44 2.41 16 23 N -0.81 -40.21 11.23 21.82 0.25 -39.97 16 24 Si 0.97 35.53 29.58 68.60 2.03 37.56 16 25 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 26 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 27 H -0.24 -8.12 7.11 99.48 0.71 -7.42 16 28 H 0.05 1.22 6.64 -2.38 -0.02 1.20 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.29 6.79 -2.39 -0.02 1.27 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.24 7.82 -2.39 -0.02 1.22 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.08 1.58 8.05 -2.38 -0.02 1.56 16 36 H 0.07 1.81 7.84 -2.39 -0.02 1.79 16 37 H 0.38 8.10 8.23 -74.06 -0.61 7.49 16 38 H 0.08 2.41 6.27 -2.39 -0.01 2.39 16 39 H 0.08 2.22 6.75 -2.39 -0.02 2.21 16 40 H 0.42 11.89 7.45 -96.75 -0.72 11.17 16 41 H 0.12 4.89 7.32 -2.91 -0.02 4.87 16 42 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 43 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 44 H 0.11 5.33 6.56 -2.91 -0.02 5.31 16 45 H 0.29 13.18 8.30 -92.70 -0.77 12.41 16 Total: -1.00 -65.17 365.41 -2.35 -67.52 By element: Atomic # 1 Polarization: 47.96 SS G_CDS: -0.30 Total: 47.66 kcal Atomic # 6 Polarization: -79.94 SS G_CDS: 2.96 Total: -76.98 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -0.62 Total: -77.19 kcal Atomic # 8 Polarization: -109.05 SS G_CDS: -6.14 Total: -115.19 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Atomic # 16 Polarization: 116.91 SS G_CDS: -0.28 Total: 116.63 kcal Total: -65.17 -2.35 -67.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421100.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.819 kcal (2) G-P(sol) polarization free energy of solvation -65.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds