Wall clock time and date at job start Tue Mar 31 2020 23:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09005 * 110.05448 * 2 1 4 4 C 1.54265 * 110.03174 * 238.58410 * 2 1 3 5 5 C 1.54896 * 104.19438 * 264.32114 * 4 2 1 6 6 C 1.54888 * 102.74663 * 322.05731 * 5 4 2 7 7 C 1.53876 * 110.03607 * 121.41434 * 2 1 3 8 8 O 1.42898 * 110.06928 * 359.97438 * 7 2 1 9 9 C 1.52998 * 110.03511 * 238.57073 * 7 2 1 10 10 N 1.46498 * 109.47472 * 186.37563 * 9 7 2 11 11 S 1.65598 * 120.00015 * 164.67417 * 10 9 7 12 12 O 1.42097 * 106.40158 * 307.67688 * 11 10 9 13 13 O 1.42103 * 106.40176 * 174.75816 * 11 10 9 14 14 C 1.76198 * 107.21841 * 61.22004 * 11 10 9 15 15 C 1.37633 * 120.12681 * 244.76312 * 14 11 10 16 16 C 1.38623 * 120.24944 * 179.97438 * 15 14 11 17 17 C 1.38654 * 120.49746 * 0.02562 * 16 15 14 18 18 C 1.37604 * 120.25074 * 359.97438 * 17 16 15 19 19 C 1.40698 * 120.12613 * 64.48683 * 14 11 10 20 20 C 1.41393 * 120.24615 * 359.97438 * 19 14 11 21 21 H 1.08002 * 120.00478 * 331.71903 * 20 19 14 22 22 C 1.39953 * 119.99863 * 151.71461 * 20 19 14 23 23 N 1.30819 * 119.99954 * 347.92156 * 22 20 19 24 24 Si 1.86801 * 119.99625 * 167.92161 * 22 20 19 25 25 H 1.48500 * 109.46698 * 90.00447 * 24 22 20 26 26 H 1.48494 * 109.46862 * 209.99868 * 24 22 20 27 27 H 1.48499 * 109.47377 * 330.00123 * 24 22 20 28 28 H 1.09008 * 109.47130 * 298.58100 * 1 2 3 29 29 H 1.09003 * 109.47764 * 58.58422 * 1 2 3 30 30 H 1.09008 * 109.47058 * 178.58597 * 1 2 3 31 31 H 1.09003 * 110.48523 * 145.64293 * 4 2 1 32 32 H 1.08996 * 110.48775 * 23.00390 * 4 2 1 33 33 H 1.09001 * 110.75340 * 203.74221 * 5 4 2 34 34 H 1.08997 * 110.75401 * 80.37300 * 5 4 2 35 35 H 1.08995 * 110.48669 * 279.26355 * 6 5 4 36 36 H 1.09005 * 110.48294 * 156.61709 * 6 5 4 37 37 H 0.96698 * 114.00123 * 179.28250 * 8 7 2 38 38 H 1.09005 * 109.47108 * 66.37697 * 9 7 2 39 39 H 1.09002 * 109.46866 * 306.38448 * 9 7 2 40 40 H 0.96997 * 119.99668 * 344.68181 * 10 9 7 41 41 H 1.07994 * 119.88075 * 359.97438 * 15 14 11 42 42 H 1.07994 * 119.74959 * 179.97438 * 16 15 14 43 43 H 1.07997 * 119.87697 * 179.97438 * 17 16 15 44 44 H 1.08004 * 120.12462 * 180.02562 * 18 17 16 45 45 H 0.97000 * 119.99697 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9037 1.0240 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 2.3281 -2.1902 -0.7191 6 6 2.8875 -1.9405 0.7035 7 6 2.0571 -0.7535 1.2337 8 8 0.9642 -1.2328 2.0197 9 6 2.9409 0.1704 2.0741 10 7 3.5574 -0.5972 3.1589 11 16 4.8429 0.0320 3.9918 12 8 5.8018 0.4190 3.0172 13 8 5.1273 -0.8825 5.0417 14 6 4.2890 1.5169 4.7619 15 6 4.8243 2.7291 4.3902 16 6 4.3900 3.8989 4.9940 17 6 3.4137 3.8625 5.9778 18 6 2.8644 2.6618 6.3653 19 6 3.2935 1.4684 5.7550 20 6 2.7318 0.2295 6.1405 21 1 2.6884 -0.5868 5.4347 22 6 2.2319 0.0609 7.4368 23 7 2.4912 0.9519 8.3589 24 14 1.1943 -1.4364 7.8502 25 1 2.0766 -2.5370 8.3146 26 1 0.2296 -1.0888 8.9243 27 1 0.4521 -1.8737 6.6407 28 1 -0.3634 0.4917 0.9025 29 1 -0.3635 0.5357 -0.8770 30 1 -0.3633 -1.0274 -0.0254 31 1 2.9810 -0.3000 -1.5967 32 1 1.3061 -0.7696 -2.0255 33 1 3.0676 -2.6931 -1.3423 34 1 1.4032 -2.7652 -0.6751 35 1 3.9440 -1.6765 0.6571 36 1 2.7402 -2.8196 1.3310 37 1 1.2323 -1.7264 2.8067 38 1 2.3325 0.9707 2.4956 39 1 3.7201 0.5997 1.4442 40 1 3.2127 -1.4742 3.3892 41 1 5.5856 2.7692 3.6252 42 1 4.8159 4.8457 4.6964 43 1 3.0831 4.7799 6.4419 44 1 2.1038 2.6358 7.1315 45 1 2.1444 0.8352 9.2572 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601421102.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:44 Heat of formation + Delta-G solvation = -126.127195 kcal Electronic energy + Delta-G solvation = -28977.056834 eV Core-core repulsion = 25085.137883 eV Total energy + Delta-G solvation = -3891.918951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.73615 -37.60935 -36.25289 -35.21854 -34.87159 -34.08296 -33.83718 -31.07768 -30.25226 -29.57849 -28.44956 -25.96195 -25.55358 -23.38488 -21.69301 -21.16250 -20.84586 -19.55197 -18.62323 -17.73660 -17.16996 -16.60519 -16.05079 -15.77097 -15.50862 -15.26850 -14.86421 -14.39291 -14.09843 -13.79039 -13.42060 -13.29734 -13.18459 -12.94870 -12.78072 -12.55323 -12.40716 -12.00777 -11.87824 -11.60802 -11.44701 -11.28755 -11.23772 -11.19169 -11.13213 -11.04396 -11.01546 -10.75453 -10.63436 -10.57884 -10.55080 -10.29409 -9.92953 -9.78439 -9.46992 -9.44871 -8.82495 -8.05508 -7.62565 -7.05341 -4.78331 1.48828 2.32065 2.71753 2.95230 2.98029 3.10277 3.74799 3.85966 4.19677 4.38650 4.46342 4.57244 4.66658 4.78209 5.11960 5.23383 5.30019 5.32832 5.41443 5.54026 5.56454 5.63064 5.65363 5.80049 5.85420 5.93306 5.96140 6.01828 6.03453 6.13043 6.21395 6.22496 6.27696 6.34056 6.39916 6.49829 6.74621 6.92890 7.06228 7.28047 7.40082 7.48221 7.64235 7.77956 7.79342 7.86823 8.26436 8.47470 8.63157 9.87514 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011023 B = 0.004953 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.551016 B = 5651.899138 C = 6501.665530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 H 0.081 0.919 4 C -0.121 4.121 5 C -0.120 4.120 6 C -0.151 4.151 7 C 0.130 3.870 8 O -0.548 6.548 9 C 0.102 3.898 10 N -1.121 6.121 11 S 2.701 3.299 12 O -0.998 6.998 13 O -0.965 6.965 14 C -0.776 4.776 15 C -0.004 4.004 16 C -0.250 4.250 17 C -0.077 4.077 18 C -0.158 4.158 19 C 0.187 3.813 20 C -0.444 4.444 21 H 0.087 0.913 22 C 0.080 3.920 23 N -0.775 5.775 24 Si 0.915 3.085 25 H -0.263 1.263 26 H -0.273 1.273 27 H -0.255 1.255 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.374 0.626 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.406 0.594 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.094 0.906 44 H 0.125 0.875 45 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.593 -3.678 -11.923 13.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.102 4.102 3 H 0.100 0.900 4 C -0.159 4.159 5 C -0.158 4.158 6 C -0.189 4.189 7 C 0.088 3.912 8 O -0.354 6.354 9 C -0.025 4.025 10 N -0.878 5.878 11 S 2.799 3.201 12 O -0.988 6.988 13 O -0.955 6.955 14 C -0.871 4.871 15 C -0.024 4.024 16 C -0.270 4.270 17 C -0.096 4.096 18 C -0.177 4.177 19 C 0.182 3.818 20 C -0.472 4.472 21 H 0.105 0.895 22 C -0.141 4.141 23 N -0.399 5.399 24 Si 0.738 3.262 25 H -0.187 1.187 26 H -0.198 1.198 27 H -0.178 1.178 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.223 0.777 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.239 0.761 41 H 0.125 0.875 42 H 0.112 0.888 43 H 0.112 0.888 44 H 0.143 0.857 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.050 -3.552 -12.167 13.306 hybrid contribution -0.646 -0.516 1.234 1.485 sum -4.695 -4.068 -10.933 12.575 Atomic orbital electron populations 1.21508 0.93777 1.02085 1.01091 1.21744 0.97326 0.99008 0.92156 0.90046 1.22467 1.00916 0.95567 0.96943 1.22432 1.00711 0.96784 0.95849 1.23081 1.00497 0.98216 0.97079 1.21983 0.85906 0.92692 0.90634 1.86567 1.32950 1.75329 1.40526 1.21919 0.97138 0.94606 0.88853 1.55654 1.54426 1.29356 1.48405 1.01061 0.72150 0.74389 0.72493 1.93446 1.58710 1.84655 1.62025 1.93547 1.82994 1.63560 1.55397 1.29806 1.18832 1.15556 1.22911 1.20248 0.94942 0.91769 0.95413 1.20488 1.05545 0.96457 1.04534 1.20907 0.95923 0.96987 0.95759 1.21519 1.02510 0.91309 1.02402 1.16992 0.85184 0.93326 0.86267 1.19820 1.32407 0.97443 0.97516 0.89541 1.25961 0.94177 0.98206 0.95780 1.69778 1.33232 1.33484 1.03359 0.86179 0.79583 0.80951 0.79515 1.18743 1.19815 1.17819 0.91994 0.93581 0.92334 0.91368 0.91341 0.91706 0.91403 0.90183 0.91055 0.77747 0.90665 0.90086 0.76094 0.87480 0.88752 0.88825 0.85722 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.41 8.08 37.15 0.30 -1.11 16 2 C -0.08 -0.93 3.16 -89.50 -0.28 -1.21 16 3 H 0.08 0.89 7.67 -51.93 -0.40 0.49 16 4 C -0.12 -1.16 6.37 -25.07 -0.16 -1.32 16 5 C -0.12 -1.17 6.91 -24.74 -0.17 -1.34 16 6 C -0.15 -1.69 5.46 -25.07 -0.14 -1.83 16 7 C 0.13 1.61 1.02 -89.50 -0.09 1.52 16 8 O -0.55 -7.10 11.13 -35.23 -0.39 -7.49 16 9 C 0.10 1.50 4.97 -4.04 -0.02 1.48 16 10 N -1.12 -18.34 4.55 -10.61 -0.05 -18.39 16 11 S 2.70 57.29 4.94 -107.50 -0.53 56.76 16 12 O -1.00 -22.14 16.57 -57.17 -0.95 -23.09 16 13 O -0.96 -23.42 16.61 -57.17 -0.95 -24.37 16 14 C -0.78 -18.22 5.86 -38.87 -0.23 -18.45 16 15 C 0.00 -0.09 9.53 -39.66 -0.38 -0.46 16 16 C -0.25 -5.42 10.05 -39.29 -0.39 -5.82 16 17 C -0.08 -1.71 10.02 -39.66 -0.40 -2.11 16 18 C -0.16 -3.86 8.67 -38.87 -0.34 -4.20 16 19 C 0.19 4.68 5.55 -106.83 -0.59 4.08 16 20 C -0.44 -10.82 7.67 -37.74 -0.29 -11.11 16 21 H 0.09 1.93 5.79 -52.49 -0.30 1.63 16 22 C 0.08 1.89 5.23 -17.34 -0.09 1.80 16 23 N -0.78 -18.85 10.87 55.55 0.60 -18.25 16 24 Si 0.91 17.59 29.58 -169.99 -5.03 12.56 16 25 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 26 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 27 H -0.25 -4.65 7.11 56.52 0.40 -4.25 16 28 H 0.06 0.77 7.87 -51.92 -0.41 0.36 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.67 7.87 -51.92 -0.41 0.26 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.59 7.84 -51.93 -0.41 0.18 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.95 7.85 -51.93 -0.41 0.54 16 36 H 0.07 0.75 8.05 -51.93 -0.42 0.33 16 37 H 0.37 4.24 7.96 45.56 0.36 4.60 16 38 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.08 1.17 7.84 -51.93 -0.41 0.76 16 40 H 0.41 5.73 7.30 -34.47 -0.25 5.48 16 41 H 0.11 2.22 7.33 -52.49 -0.38 1.84 16 42 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 43 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 44 H 0.13 3.08 6.22 -52.48 -0.33 2.76 16 45 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -30.31 368.82 -10.86 -41.17 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -5.85 Total: 15.65 kcal Atomic # 6 Polarization: -36.83 SS G_CDS: -3.27 Total: -40.10 kcal Atomic # 7 Polarization: -37.19 SS G_CDS: 0.56 Total: -36.63 kcal Atomic # 8 Polarization: -52.67 SS G_CDS: -2.29 Total: -54.95 kcal Atomic # 14 Polarization: 17.59 SS G_CDS: -5.03 Total: 12.56 kcal Atomic # 16 Polarization: 57.29 SS G_CDS: -0.53 Total: 56.76 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.31 -10.86 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601421102.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.961 kcal (2) G-P(sol) polarization free energy of solvation -30.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds